genome.fa.s334.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  62  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12926104--12926177	9	8.3	9	80	16	59	81	0	2	16	0.81
12926103--12926184	24	3.4	24	81	6	94	80	0	3	15	0.85
12926098--12926195	38	2.6	38	76	14	103	77	0	5	17	0.94
12926103--12926190	33	2.6	33	81	15	99	79	0	4	15	0.89
12926110--12926173	9	7.9	8	78	15	69	82	0	1	15	0.74
12927059--12927084	3	8.7	3	100	0	52	69	0	0	30	0.89
12927201--12927232	16	2.1	16	88	11	50	59	3	0	37	1.13
12927341--12927376	16	2.2	17	90	9	58	86	0	13	0	0.58
12927346--12927383	17	2.2	17	86	9	51	81	5	13	0	0.85
12927410--12927448	21	1.9	21	89	5	62	15	23	35	25	1.94
12930999--12931027	14	2.1	14	100	0	58	55	6	0	37	1.27
12931504--12931544	19	2.2	19	86	8	57	48	7	21	21	1.74
12931734--12931813	43	1.9	41	82	10	99	26	1	21	51	1.55
12931881--12931919	19	2.1	19	85	9	53	46	0	2	51	1.14
12932669--12932714	15	2.9	17	75	18	55	52	0	2	45	1.13
12934184--12934477	148	2.0	150	82	2	367	43	6	12	37	1.68
12935198--12935250	11	4.8	11	76	0	52	54	5	3	35	1.42
12935320--12935460	22	6.5	22	65	15	78	50	5	7	36	1.55
12935285--12935367	22	3.4	24	74	11	62	50	3	8	37	1.50
12935314--12935474	65	2.4	65	77	10	157	49	6	8	36	1.58
12935634--12935689	22	2.5	22	78	16	62	46	8	7	37	1.63
12936319--12936432	22	5.2	23	71	16	82	48	2	9	39	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12936338--12936469	22	6.3	22	69	16	84	46	2	9	40	1.49
12936588--12936678	43	2.1	45	83	8	116	51	4	5	38	1.45
12936753--12936821	22	3.1	22	81	6	68	44	7	7	40	1.60
12936805--12936861	30	1.9	30	96	0	105	33	7	19	40	1.78
12937716--12937813	21	4.6	22	72	11	78	47	9	5	37	1.57
12939203--12939236	3	11.3	3	100	0	68	32	0	0	67	0.91
12944911--12944943	2	17.0	2	87	6	50	48	0	3	48	1.17
12947339--12947430	31	3.0	30	84	6	96	36	5	6	51	1.51
12947530--12947613	14	6.2	14	71	23	65	48	2	0	48	1.14
12947524--12947613	26	3.4	25	79	14	85	47	2	0	50	1.13
12948491--12948566	39	1.9	39	94	0	134	22	2	30	44	1.66
12948543--12948721	7	28.0	6	67	18	69	21	1	31	45	1.62
12948615--12948838	13	17.5	13	69	15	87	23	1	28	46	1.62
12948694--12948771	32	2.5	31	80	16	88	21	1	29	47	1.59
12950081--12950111	9	3.6	9	95	4	55	93	0	6	0	0.35
12956928--12957045	19	6.4	19	66	26	56	55	0	1	41	1.15
12956934--12957012	42	1.9	41	82	12	99	53	0	2	44	1.14
12957293--12957368	31	2.5	31	82	4	91	43	13	5	38	1.66
12962669--12962702	17	2.0	17	94	0	59	38	0	14	47	1.45
12969819--12969903	21	4.4	18	69	25	59	22	9	0	68	1.18
12971370--12971410	21	1.9	22	85	5	57	31	14	9	43	1.78
12974571--12974605	18	1.9	17	88	11	52	51	37	5	5	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12979848--12979893	15	2.9	16	79	20	53	26	0	23	50	1.50
12980159--12980197	13	3.0	13	80	0	51	56	0	0	43	0.99
12980397--12980478	39	2.1	38	84	2	101	19	2	28	50	1.61
12980438--12980481	23	1.9	23	95	0	79	25	4	20	50	1.67
12980422--12980487	23	2.9	23	81	0	78	21	4	21	53	1.64
12980467--12980519	16	3.4	16	84	5	72	26	7	18	47	1.75
12980467--12980537	31	2.2	32	82	7	83	26	7	22	43	1.78
12980857--12980898	22	1.9	22	90	0	66	28	0	0	71	0.86
12983692--12983747	25	2.3	24	82	14	62	73	8	10	7	1.26
12987057--12987212	77	2.0	77	97	0	294	33	13	9	43	1.76
12987504--12987995	227	2.1	228	83	6	611	32	11	5	50	1.62
12987234--12991134	232	16.7	231	72	11	1750	31	10	6	51	1.60
12988078--12991094	234	12.9	231	73	10	1670	31	10	6	52	1.59
12988078--12990112	469	4.3	467	74	10	1164	31	10	6	51	1.61
12988319--12990079	701	2.5	695	77	8	1707	31	10	5	51	1.60
12998500--12998661	81	2.0	81	98	0	315	16	22	11	49	1.78
13002414--13002454	10	4.1	10	87	0	64	58	0	0	41	0.98
13005008--13005037	13	2.3	13	94	0	51	60	0	3	36	1.14
13007161--13007204	23	1.9	23	86	9	63	59	2	34	4	1.30
13007681--13007718	18	2.2	18	85	4	51	52	0	10	36	1.36
13009034--13009117	28	3.0	28	77	8	82	46	0	2	51	1.14
13013234--13013346	56	2.0	56	89	0	172	34	24	12	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13016501--13016580	24	3.4	24	77	16	78	61	0	0	38	0.96
13016540--13016580	12	3.5	12	81	15	50	65	0	0	34	0.93
13022183--13022245	10	6.3	10	81	0	63	41	7	9	41	1.67
13022212--13022280	20	3.5	20	81	0	84	40	13	7	39	1.72
13022193--13022284	38	2.4	38	81	3	103	40	10	8	40	1.71
13022215--13022283	10	7.1	10	78	6	70	42	11	7	39	1.69
13022184--13022290	20	5.2	20	69	14	58	40	10	8	41	1.69
13022173--13022300	44	2.9	40	72	22	103	39	11	8	39	1.72
13029647--13029693	17	2.6	19	74	12	55	65	17	2	14	1.36
13034870--13035029	34	4.6	35	71	13	116	54	7	15	23	1.66
13034987--13035130	66	2.2	66	94	0	252	54	15	13	16	1.72
13035015--13035124	36	3.2	35	67	27	101	55	16	12	15	1.69
13035242--13035386	36	4.1	36	76	7	134	52	14	17	15	1.75
13035465--13035839	36	10.6	36	70	11	164	55	13	13	18	1.69
13035494--13035839	72	4.9	71	73	7	231	55	12	13	17	1.68
13035494--13035768	108	2.6	109	76	10	273	55	13	14	17	1.70
13036704--13036916	77	2.7	79	81	6	227	31	11	15	41	1.83
13046571--13046601	14	2.2	14	100	0	62	29	0	0	70	0.87
13050632--13050915	44	6.5	43	79	8	144	44	15	11	27	1.81
13050704--13050912	44	4.7	43	79	7	206	45	14	11	28	1.79
13051565--13051634	28	2.5	28	81	9	90	37	5	21	35	1.77
13062522--13062551	4	7.5	4	100	0	60	26	0	23	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13062657--13062745	43	2.1	43	82	4	108	43	21	7	26	1.80
13066203--13066243	15	2.8	15	89	10	59	65	9	4	19	1.40
13066937--13066975	21	1.9	20	84	5	51	15	17	0	66	1.25
13081926--13081974	21	2.2	23	82	13	59	28	4	8	59	1.45
13084800--13084867	28	2.5	26	78	19	68	72	2	14	10	1.23
13084819--13084867	26	1.9	25	91	4	80	77	0	12	10	0.99
13085898--13086032	50	2.7	50	81	0	153	31	10	14	44	1.78
13086013--13086185	70	2.5	71	88	0	258	26	13	16	43	1.85
13086737--13086815	22	3.6	22	81	3	70	37	8	13	39	1.77
13087087--13087161	20	3.6	20	74	10	69	34	9	14	41	1.78
13087139--13087279	76	1.9	76	88	5	214	35	14	14	36	1.86
13087229--13087303	35	2.2	35	92	2	125	34	12	16	37	1.85
13087285--13087317	12	2.8	12	90	0	57	30	18	18	33	1.94
13087590--13087629	19	2.0	20	85	4	55	35	12	10	42	1.76
13089132--13089183	27	1.9	27	84	7	70	51	1	7	38	1.42
13089917--13090128	104	2.0	104	97	0	399	51	14	6	27	1.67
13090095--13090177	42	2.0	42	95	0	148	38	28	8	24	1.84
13093642--13093675	2	17.0	2	88	11	52	47	2	0	50	1.16
13096141--13096185	21	2.2	20	88	4	63	55	0	6	37	1.26
13096785--13096838	28	1.9	28	85	7	74	57	1	5	35	1.33
13097673--13097712	2	20.0	2	100	0	80	0	50	0	50	1.00
13100533--13100583	16	3.3	16	74	20	63	52	1	7	37	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13100523--13100584	30	2.0	31	96	3	117	54	3	6	35	1.42
13107048--13107080	16	2.1	16	88	11	50	60	3	12	24	1.46
13110440--13110478	20	1.9	21	89	5	62	74	0	25	0	0.82
13110441--13110497	24	2.5	23	80	11	64	73	0	22	3	0.98
13117235--13117322	27	3.1	27	75	15	88	5	11	44	38	1.64
13117332--13117420	30	3.0	30	84	0	106	12	19	35	32	1.89
13120885--13120921	19	1.9	19	89	10	58	37	10	0	51	1.37
13123109--13123171	30	2.1	30	81	0	72	49	14	3	33	1.59
13125448--13125486	20	2.1	19	85	9	53	48	5	12	33	1.63
13133693--13133725	10	3.4	10	87	8	50	6	0	3	90	0.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160