genome.fa.s334.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  11  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3383003--3383057	26	2.1	27	93	3	94	61	5	0	32	1.19
3383425--3383487	30	2.1	30	96	0	117	30	25	7	36	1.84
3385828--3385853	12	2.2	12	100	0	52	69	7	15	7	1.35
3394828--3394869	21	2.0	21	86	4	59	7	16	0	76	1.00
3394899--3394926	2	14.0	2	100	0	56	50	0	0	50	1.00
3399579--3399621	3	13.7	3	80	9	50	30	0	39	30	1.57
3402244--3402274	16	1.9	16	93	0	53	41	6	3	48	1.45
3403116--3403165	13	3.9	13	77	12	50	54	0	4	42	1.19
3403206--3403251	19	2.3	20	81	11	58	34	0	0	65	0.93
3404255--3404330	34	2.2	34	80	0	89	48	11	3	35	1.58
3405160--3405204	21	2.1	22	83	4	56	35	0	0	64	0.94
3408160--3408750	110	5.4	107	77	11	440	51	1	6	40	1.37
3408257--3408327	35	2.0	35	100	0	142	53	2	2	40	1.30
3408292--3408750	110	4.2	110	83	11	527	51	1	6	40	1.36
3408559--3408634	18	4.0	18	72	11	62	51	1	5	42	1.33
3408626--3408699	24	3.2	24	76	14	66	55	1	4	39	1.27
3408676--3408742	18	3.5	19	67	18	57	49	2	8	38	1.50
3408656--3408739	39	2.2	38	82	8	98	48	2	9	39	1.49
3410340--3410370	2	15.5	2	100	0	62	48	0	0	51	1.00
3411135--3411175	16	2.5	17	76	11	50	63	2	2	31	1.20
3411826--3411851	6	4.3	6	100	0	52	69	0	0	30	0.89
3413325--3413355	2	15.5	2	100	0	62	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3413897--3413947	15	3.5	14	77	17	50	45	0	0	54	0.99
3413888--3413946	16	3.9	16	78	14	54	40	1	0	57	1.09
3414152--3414204	20	2.7	20	84	0	70	43	0	7	49	1.31
3414157--3414219	20	3.2	20	79	4	65	38	0	9	52	1.34
3415098--3415158	30	2.0	30	100	0	122	57	6	13	22	1.59
3416603--3416969	184	2.0	184	83	7	467	36	9	11	42	1.73
3420582--3420631	26	2.0	25	88	7	75	24	18	4	54	1.61
3421217--3421371	75	2.1	75	88	2	231	37	13	10	38	1.80
3427541--3427606	34	1.9	34	84	6	89	43	4	3	48	1.38
3428354--3428380	6	4.5	6	100	0	54	51	0	0	48	1.00
3430158--3430264	30	3.6	30	76	0	97	48	3	5	42	1.44
3430750--3430796	22	2.2	21	85	7	60	51	6	0	42	1.27
3437039--3437152	60	1.9	60	83	3	149	48	12	8	30	1.71
3442932--3443026	22	4.4	21	70	21	63	49	6	3	41	1.44
3447099--3447127	3	9.7	3	100	0	58	34	34	31	0	1.58
3451433--3451458	2	13.0	2	100	0	52	50	0	0	50	1.00
3452742--3452778	2	18.5	2	100	0	74	48	0	51	0	1.00
3455569--3455619	23	2.2	24	92	3	86	35	19	7	37	1.81
3461117--3461158	18	2.3	19	87	4	59	35	0	0	64	0.94
3462079--3462110	2	16.0	2	100	0	64	50	0	0	50	1.00
3466024--3466098	26	2.9	27	75	13	75	17	22	25	34	1.96
3466128--3466169	16	2.8	15	85	7	50	21	2	0	76	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3466132--3466193	3	20.7	3	75	6	54	29	1	0	69	0.98
3466128--3466196	9	7.4	9	74	16	61	26	1	0	72	0.93
3467185--3467231	21	2.2	21	84	0	58	74	2	6	17	1.12
3467764--3467828	18	3.6	18	77	6	60	23	9	4	63	1.43
3470457--3470486	4	7.2	4	96	3	51	26	23	0	50	1.50
3480615--3480761	52	2.8	52	84	2	188	28	22	6	42	1.79
3481051--3481156	25	4.2	25	75	11	83	18	37	8	34	1.82
3484687--3484733	24	2.0	24	95	0	85	31	29	8	29	1.87
3487553--3487601	20	2.3	20	79	6	53	40	2	8	48	1.44
3491532--3491562	2	16.0	2	93	6	55	51	0	48	0	1.00
3493581--3493662	22	3.7	21	70	20	60	60	1	1	36	1.12
3494917--3494962	21	2.2	21	84	7	58	32	2	2	63	1.19
3506720--3506852	52	2.6	51	77	13	146	27	21	9	42	1.83
3507142--3507247	25	4.2	25	75	11	83	18	37	8	34	1.82
3510777--3510823	24	2.0	24	95	0	85	31	29	8	29	1.87
3519662--3519711	20	2.6	19	84	9	75	48	0	0	52	1.00
3519657--3519718	20	2.8	24	72	18	62	53	0	0	46	1.00
3520220--3520271	15	3.5	15	76	10	54	59	5	1	32	1.32
3520221--3520280	25	2.4	24	78	10	59	60	6	1	31	1.33
3520418--3520511	41	2.2	42	81	9	111	48	3	3	44	1.34
3521153--3521208	25	2.3	23	74	17	58	35	1	1	60	1.17
3521264--3521323	31	1.9	31	82	0	75	33	6	5	55	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3522192--3522230	3	13.0	3	100	0	78	33	0	0	66	0.92
3537416--3537495	37	2.2	37	78	15	85	48	2	1	47	1.23
3542258--3542295	12	3.2	12	96	0	67	28	0	2	68	1.03
3545495--3545556	18	3.5	17	74	12	54	24	1	3	70	1.10
3545782--3545830	24	2.1	23	85	11	64	30	2	12	55	1.48
3545795--3545830	12	3.0	12	84	15	56	33	2	13	50	1.57
3546322--3546399	23	3.4	23	74	10	70	17	3	5	73	1.18
3546420--3546791	200	1.9	199	82	7	477	50	5	9	34	1.58
3547975--3548009	15	2.3	15	90	9	54	28	22	2	45	1.67
3551729--3551772	23	1.9	23	86	9	63	43	4	25	27	1.74
3552499--3553038	42	13.0	41	85	4	636	25	10	14	49	1.75
3552492--3553038	165	3.3	165	85	5	683	25	9	15	49	1.75
3553480--3553536	22	2.7	21	78	5	53	66	21	12	0	1.23
3557345--3557595	136	1.9	136	88	4	384	28	12	13	45	1.79
3561699--3561731	16	2.0	17	88	5	50	33	21	3	42	1.68
3561858--3561910	17	3.2	17	81	2	63	30	9	5	54	1.55
3561883--3561921	17	2.3	17	86	0	51	28	17	7	46	1.76
3561907--3561948	18	2.3	18	91	0	66	38	11	11	38	1.79
3561959--3562041	17	4.8	18	75	8	75	30	13	7	49	1.68
3561959--3562033	34	2.2	34	87	0	105	29	13	5	52	1.62
3566820--3566848	9	3.3	9	95	4	51	24	6	0	68	1.13
3567593--3567639	21	2.2	21	82	17	53	12	2	6	78	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3567630--3567672	20	2.1	21	84	16	56	20	9	0	69	1.15
3584420--3584454	14	2.5	14	90	0	52	28	2	8	60	1.41
3584429--3584456	14	2.0	14	100	0	56	35	0	7	57	1.26
3585416--3585528	52	2.2	52	82	6	131	55	11	7	24	1.62
3587546--3587644	51	1.9	51	86	8	139	50	18	6	25	1.69
3588262--3588319	26	2.2	26	84	0	71	34	24	24	17	1.96
3588469--3589263	119	6.7	118	82	2	792	45	14	20	19	1.84
3588469--3589263	237	3.4	237	83	2	943	45	14	20	19	1.84
3589747--3589817	33	2.2	33	84	0	88	53	4	22	19	1.62
3589755--3589820	33	2.0	33	90	0	105	53	3	19	24	1.60
3590089--3590133	20	2.2	20	88	7	65	11	8	11	68	1.39
3590125--3590154	13	2.3	13	94	0	51	6	0	3	90	0.56
3600323--3600367	5	9.4	5	77	18	51	75	4	0	20	0.97
3600562--3600662	51	2.0	52	90	2	159	45	20	8	24	1.80
3616713--3616757	19	2.3	20	81	14	58	24	2	0	73	0.95
3622530--3622554	5	5.0	5	100	0	50	0	0	20	80	0.72
3626147--3626171	3	8.3	3	100	0	50	68	0	0	32	0.90
3628445--3628488	23	1.9	23	85	0	61	52	4	0	43	1.22
3628556--3628612	12	4.9	12	79	10	57	47	3	0	49	1.18
3631556--3631590	18	1.9	18	88	0	52	74	11	0	14	1.08
3632218--3632243	1	26.0	1	100	0	52	100	0	0	0	0.00
3646139--3646182	22	2.0	22	95	0	79	43	13	11	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3649618--3649652	18	1.9	18	88	0	52	37	25	14	22	1.92
3649824--3649908	23	3.6	23	91	3	125	40	18	27	14	1.89
3650056--3650099	22	2.0	22	95	0	79	43	13	11	31	1.80
3655711--3655887	86	2.1	86	98	1	347	28	19	29	21	1.98
3670944--3670987	18	2.3	20	84	7	56	34	6	6	52	1.55
3673452--3673507	20	2.9	19	75	12	51	66	3	0	30	1.09
3673489--3673527	20	2.0	20	89	0	60	76	2	2	17	1.01
3673534--3673579	23	2.0	23	86	0	65	32	13	36	17	1.88
3674313--3674359	18	2.6	17	83	10	58	61	0	0	38	0.96
3675104--3675159	25	2.3	24	87	3	76	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160