genome.fa.s334.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  69  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14436690--14436739	18	2.7	18	84	3	55	6	2	8	84	0.86
14436663--14436770	24	4.4	24	83	10	112	4	3	9	82	0.93
14436661--14436770	12	8.8	13	71	15	72	4	3	9	82	0.92
14436682--14436770	29	3.1	28	78	16	85	3	3	10	83	0.89
14436662--14436770	23	4.7	21	71	26	71	4	3	9	82	0.92
14436828--14437130	105	2.9	104	84	2	367	33	15	14	36	1.88
14437137--14437255	32	3.7	32	82	0	112	18	15	30	36	1.91
14438475--14439111	145	4.4	143	79	6	566	21	16	9	51	1.73
14441939--14441972	16	2.2	15	94	5	59	0	8	5	85	0.75
14462901--14462955	27	2.0	27	92	0	92	49	7	23	20	1.74
14483316--14483400	18	4.8	18	72	21	72	72	0	2	24	0.96
14483314--14483401	34	2.5	35	83	9	108	73	0	2	23	0.94
14485837--14485865	7	4.1	7	100	0	58	13	0	41	44	1.44
14485875--14485911	19	1.9	19	94	0	65	29	18	10	40	1.85
14485871--14485924	19	2.8	19	85	0	63	29	12	16	40	1.86
14486178--14486229	3	17.3	3	100	0	104	32	0	0	67	0.91
14487833--14487889	7	8.0	7	82	9	53	35	1	5	57	1.31
14487822--14487889	14	4.9	13	77	12	55	32	4	4	58	1.37
14488166--14488256	25	3.6	24	81	12	96	2	6	9	81	0.95
14488166--14488257	13	7.2	12	78	10	94	2	6	9	81	0.95
14488535--14488603	35	2.0	35	82	0	84	53	14	14	17	1.73
14488690--14488805	35	3.4	34	69	8	92	32	14	18	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14488691--14489143	68	6.8	67	75	9	239	32	14	15	36	1.88
14488943--14489051	34	3.2	34	75	7	114	33	16	10	39	1.82
14488670--14489148	135	3.6	133	77	7	402	32	14	15	37	1.88
14488894--14489076	35	5.4	34	71	13	137	33	15	14	36	1.88
14488828--14489148	134	2.4	133	81	7	362	32	14	14	38	1.87
14489154--14489240	31	2.8	31	87	0	120	29	12	19	37	1.89
14489309--14489433	67	1.9	66	89	1	196	29	18	18	33	1.95
14489314--14489465	67	2.3	67	85	4	191	31	17	17	33	1.93
14489391--14489664	99	2.8	98	77	12	283	31	15	16	36	1.90
14489345--14489758	32	12.7	32	68	15	116	31	15	17	35	1.92
14490610--14490692	14	5.8	14	70	13	53	3	21	2	72	1.12
14490610--14490651	15	2.8	15	82	7	50	0	19	2	78	0.86
14490964--14491041	41	1.9	41	97	0	147	42	11	11	34	1.77
14491198--14491236	12	3.2	12	85	0	51	0	15	0	84	0.62
14492743--14492812	3	23.3	3	91	0	104	32	1	2	62	1.18
14495653--14495704	26	2.0	27	84	3	70	65	3	5	25	1.32
14495653--14495712	26	2.3	27	82	2	68	63	6	5	25	1.39
14498293--14498338	17	2.6	17	83	16	58	21	0	0	78	0.76
14498382--14498460	7	11.8	6	80	12	59	36	2	1	59	1.19
14498382--14498468	14	6.4	13	75	13	77	36	2	1	59	1.17
14498382--14498468	20	4.2	20	77	13	88	36	2	1	59	1.17
14498422--14498460	6	6.2	6	91	5	60	33	0	2	64	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14500991--14501016	10	2.6	10	100	0	52	42	0	7	50	1.31
14504039--14504079	21	1.9	22	85	5	57	63	17	2	17	1.42
14509441--14509494	9	5.8	9	78	4	54	3	14	0	81	0.82
14510355--14510404	22	2.3	22	82	0	64	64	12	8	16	1.49
14513421--14513502	41	2.0	41	85	4	112	36	14	9	39	1.79
14514325--14514388	32	2.0	32	84	6	85	9	20	10	59	1.58
14514619--14514704	43	2.0	43	100	0	172	34	18	11	34	1.87
14517459--14517627	89	1.9	89	83	2	223	24	13	14	47	1.80
14523734--14523762	12	2.5	12	94	5	51	72	6	6	13	1.26
14526082--14526113	16	2.0	16	100	0	64	25	6	12	56	1.59
14526857--14527007	68	2.2	69	85	4	200	31	11	19	38	1.87
14527661--14527708	21	2.3	20	72	6	51	16	22	12	47	1.80
14534745--14535100	186	1.9	185	87	5	522	33	10	13	41	1.80
14536002--14536063	28	2.1	29	88	5	90	22	1	25	50	1.59
14536013--14536079	28	2.4	28	82	0	80	23	4	26	44	1.72
14539408--14539637	126	1.8	126	82	7	297	35	17	11	35	1.86
14542637--14542680	2	22.0	2	100	0	88	50	0	0	50	1.00
14550196--14550448	126	2.0	126	93	0	434	35	14	12	37	1.84
14551349--14551757	142	2.8	141	81	4	453	39	12	14	33	1.84
14552343--14552450	57	1.9	57	92	0	180	41	18	13	25	1.88
14552396--14552910	50	10.3	50	80	7	535	37	17	13	31	1.89
14552396--14552910	201	2.6	199	83	6	612	37	17	13	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14561432--14561594	88	1.9	88	96	0	299	29	11	12	47	1.75
14567994--14568036	15	2.9	15	79	10	52	76	4	9	9	1.14
14571690--14571897	106	2.0	106	84	3	276	30	17	15	37	1.91
14573198--14573224	14	1.9	14	100	0	54	81	0	7	11	0.87
14576031--14576078	25	1.9	25	95	0	87	33	12	6	47	1.66
14577350--14577415	33	2.0	33	85	5	89	36	12	12	39	1.80
14577559--14577599	20	2.0	20	85	0	55	0	12	4	82	0.81
14586706--14586749	23	2.0	22	86	4	61	13	9	9	68	1.40
14594389--14594448	29	2.1	28	90	9	95	48	18	0	33	1.48
14594838--14594890	20	2.5	22	82	17	67	62	7	7	22	1.47
14596960--14596997	19	2.0	20	89	5	60	31	5	7	55	1.51
14597085--14597145	29	2.1	29	100	0	122	34	21	9	34	1.86
14597092--14597153	29	2.1	29	93	0	106	35	20	9	33	1.86
14603540--14603743	102	2.0	102	93	0	345	60	1	9	27	1.39
14604001--14604074	38	1.9	38	86	5	105	44	24	10	20	1.83
14616016--14616077	3	20.7	3	89	0	97	66	29	1	3	1.17
14616076--14616117	3	14.0	3	100	0	84	66	0	0	33	0.92
14616849--14616892	12	3.1	14	87	12	56	79	0	13	6	0.92
14616849--14616883	16	2.3	15	90	9	54	77	0	17	5	0.96
14617720--14617750	16	1.9	16	93	0	53	87	3	9	0	0.66
14625218--14625324	30	3.6	30	78	2	126	37	13	13	36	1.83
14625202--14625339	59	2.3	59	93	0	240	37	13	13	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14625202--14625339	30	4.7	29	73	3	123	37	13	13	36	1.83
14625320--14625434	34	3.4	34	86	1	140	40	14	15	29	1.88
14625658--14625738	32	2.4	34	77	8	85	37	18	17	27	1.93
14625707--14625914	34	6.1	36	70	17	115	34	20	15	29	1.93
14625732--14625917	101	1.9	101	86	3	268	34	20	14	29	1.93
14625660--14626146	33	14.6	35	70	13	156	37	20	14	27	1.92
14625697--14626112	169	2.5	166	81	6	414	36	20	14	27	1.92
14626181--14626289	36	3.0	36	82	0	128	10	15	21	53	1.71
14626199--14626382	94	2.0	94	85	2	253	10	16	20	51	1.74
14626306--14626397	36	2.6	36	85	1	114	9	16	25	48	1.76
14626306--14626419	36	3.2	36	81	5	97	10	17	21	50	1.76
14627996--14628217	115	1.9	116	86	0	320	26	14	20	37	1.92
14628591--14628682	26	3.6	25	78	7	112	57	3	5	33	1.38
14628591--14628689	52	1.9	53	91	4	166	54	4	8	33	1.49
14628866--14628909	19	2.3	19	84	0	52	43	31	6	18	1.76
14628880--14628948	19	3.6	19	76	9	68	37	31	11	18	1.87
14629936--14630008	35	2.1	35	89	0	110	17	13	19	49	1.80
14629944--14630037	35	2.7	35	89	0	134	13	10	19	56	1.66
14630127--14630251	35	3.6	34	78	4	124	20	16	14	48	1.80
14630520--14630596	35	2.2	35	88	0	109	15	15	19	49	1.80
14630541--14630616	35	2.2	35	90	4	118	19	13	15	51	1.76
14630734--14630801	7	8.9	8	82	10	65	79	10	0	10	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14630736--14630774	9	4.6	9	84	9	55	82	10	0	7	0.86
14630717--14630806	7	12.4	7	71	17	51	80	12	0	7	0.91
14631167--14631199	6	5.5	6	96	0	57	66	0	3	30	1.06
14639295--14639337	19	2.3	19	84	8	52	20	16	16	46	1.84
14639552--14639644	13	6.9	13	73	9	62	20	1	31	47	1.57
14642256--14642293	20	1.9	20	88	0	58	34	23	23	18	1.96
14642328--14642428	31	3.2	31	83	5	139	35	7	17	38	1.79
14642422--14642490	30	2.3	30	90	5	113	39	20	14	26	1.91
14642706--14642976	51	5.3	50	72	6	152	38	16	15	29	1.90
14642706--14642975	102	2.6	101	77	6	258	38	16	15	30	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160