genome.fa.s334.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  157  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32307452--32307502	21	2.5	21	87	3	68	39	7	15	37	1.77
32307463--32307503	21	2.0	21	95	0	73	36	7	19	36	1.80
32307568--32307826	114	2.3	114	91	0	401	38	13	14	33	1.85
32308126--32308255	44	3.1	41	83	10	129	24	12	18	44	1.84
32308143--32308339	44	4.5	43	82	5	200	22	13	19	44	1.85
32308137--32308339	88	2.3	85	83	3	235	22	13	19	44	1.85
32308424--32308462	17	2.3	17	91	8	62	79	2	10	7	1.02
32308678--32308718	15	2.8	15	79	13	50	63	0	36	0	0.95
32308994--32309023	13	2.3	13	94	0	51	20	0	3	76	0.92
32308996--32309032	17	2.1	18	90	5	58	21	0	2	75	0.92
32309048--32309089	21	2.0	21	86	9	59	21	0	4	73	1.01
32309116--32309605	60	8.2	55	76	16	401	48	4	9	37	1.57
32309116--32309605	118	4.1	116	78	12	465	48	4	9	37	1.57
32310461--32311144	109	6.3	108	81	3	599	46	14	18	20	1.84
32310503--32311142	216	2.9	213	79	7	646	46	14	18	20	1.84
32310897--32311033	35	3.8	35	72	12	109	48	13	17	19	1.80
32310478--32311155	325	2.1	324	80	4	749	45	14	18	20	1.85
32311160--32311273	39	2.9	39	79	18	123	54	12	17	15	1.71
32311169--32311273	38	2.7	38	78	7	106	53	13	18	15	1.73
32311182--32311439	37	6.9	37	71	16	133	48	15	21	13	1.80
32312329--32312488	33	4.9	33	77	4	146	35	17	17	29	1.93
32312314--32312455	66	2.2	66	83	5	173	35	17	17	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32313446--32313512	21	3.0	21	81	14	64	8	11	1	77	1.05
32313947--32313972	10	2.6	10	100	0	52	7	0	0	92	0.39
32313938--32313973	17	2.1	18	89	5	56	11	2	0	86	0.68
32314519--32314545	6	4.5	6	100	0	54	51	18	0	29	1.46
32316354--32316411	24	2.4	24	88	0	80	46	3	24	25	1.68
32316521--32316554	15	2.2	16	89	5	52	64	11	0	23	1.26
32319837--32319886	22	2.3	21	80	10	55	26	4	22	48	1.68
32319915--32320011	30	3.3	30	69	13	76	20	3	26	49	1.64
32319935--32319959	13	1.9	13	100	0	50	12	0	32	56	1.36
32319926--32320012	30	2.9	29	73	11	86	20	2	27	49	1.61
32319883--32320012	59	2.2	60	83	4	154	19	2	27	50	1.59
32320272--32320329	19	2.8	20	82	14	73	34	1	3	60	1.24
32320269--32320341	22	3.4	22	81	12	89	32	1	4	61	1.23
32320268--32320309	3	13.7	3	85	5	57	35	0	2	61	1.09
32324547--32324589	20	2.2	20	86	0	59	37	2	4	55	1.33
32329688--32329719	3	11.0	3	93	6	57	31	0	0	68	0.90
32329972--32330005	15	2.3	15	94	0	59	23	0	23	52	1.47
32329963--32330068	22	4.9	22	73	13	60	21	0	27	50	1.55
32329994--32330032	14	2.7	15	88	4	53	17	2	25	53	1.56
32330228--32330264	3	12.3	3	100	0	74	32	0	0	67	0.91
32330441--32330472	16	2.1	16	88	11	50	31	6	0	62	1.20
32331211--32331247	13	2.9	13	85	14	51	0	2	16	81	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32338820--32338850	3	10.7	3	93	6	55	35	0	0	64	0.94
32339653--32339696	14	3.1	14	78	12	54	52	2	0	45	1.13
32341437--32341466	14	2.2	14	94	5	53	20	0	6	73	1.05
32351722--32351777	28	2.0	28	92	0	94	28	7	10	53	1.62
32353117--32353148	8	4.0	8	100	0	64	25	50	0	25	1.50
32364872--32364901	15	1.9	16	93	6	53	23	3	0	73	0.98
32388711--32388737	5	5.4	5	100	0	54	40	0	0	59	0.98
32388589--32388753	84	2.0	80	88	4	240	40	7	3	48	1.48
32408916--32408952	2	18.5	2	100	0	74	51	0	0	48	1.00
32412287--32412513	84	2.7	84	92	2	370	35	22	18	23	1.95
32419430--32419470	2	20.5	2	100	0	82	48	0	51	0	1.00
32423390--32423458	27	2.3	29	78	11	70	56	2	4	36	1.34
32435821--32435897	32	2.4	32	82	4	93	49	3	1	45	1.28
32435864--32435934	28	2.5	28	82	8	83	52	4	0	43	1.20
32436342--32436412	28	2.6	27	72	16	67	53	4	0	42	1.20
32440366--32440451	43	2.0	43	88	0	127	39	15	11	33	1.83
32440547--32440581	16	2.1	17	89	5	54	34	5	5	54	1.48
32444602--32444626	2	12.5	2	100	0	50	52	0	0	48	1.00
32444623--32444650	6	4.7	6	100	0	56	35	0	14	50	1.43
32451074--32451099	2	13.0	2	100	0	52	50	0	0	50	1.00
32454671--32454735	33	2.0	33	90	0	103	47	1	10	40	1.48
32463337--32463378	3	14.0	3	100	0	84	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32492409--32492471	32	1.9	32	84	9	83	44	1	1	52	1.20
32493070--32493109	19	2.1	19	90	0	62	65	0	0	35	0.93
32493546--32493572	2	13.5	2	100	0	54	51	0	0	48	1.00
32494208--32494256	2	24.5	2	100	0	98	51	0	48	0	1.00
32502092--32502143	27	1.9	27	88	0	77	40	13	21	25	1.89
32505687--32505728	22	1.9	22	90	0	66	45	9	11	33	1.73
32509645--32509687	22	2.0	22	90	0	68	44	6	11	37	1.68
32509646--32509698	22	2.4	22	81	6	54	49	5	11	33	1.62
32518469--32518504	3	12.0	3	100	0	72	33	0	0	66	0.92
32519038--32519078	8	5.1	8	93	0	55	39	31	19	9	1.84
32520589--32520895	152	2.0	153	88	3	458	41	7	6	44	1.57
32521344--32521390	23	2.0	24	84	12	62	61	4	0	34	1.15
32523245--32523284	20	2.0	21	90	5	64	27	2	0	70	1.01
32524098--32524216	22	5.5	21	78	11	98	52	2	10	34	1.50
32524127--32524216	44	2.0	45	86	2	128	50	3	11	35	1.55
32524156--32524211	11	5.1	11	70	8	51	51	1	8	37	1.44
32524524--32524584	22	2.9	22	74	13	56	49	3	8	39	1.49
32524484--32524584	43	2.3	44	78	13	109	49	2	9	37	1.51
32524677--32525033	22	16.2	22	71	10	156	50	7	7	34	1.58
32524677--32525032	66	5.4	66	71	8	197	50	7	7	34	1.57
32524601--32525033	44	9.8	44	69	9	188	49	6	7	35	1.58
32524831--32524998	67	2.5	66	75	5	151	48	5	7	38	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32525059--32525175	22	5.4	22	72	14	82	41	6	11	41	1.67
32525077--32525177	44	2.3	43	80	9	107	42	5	10	40	1.64
32525203--32525274	22	3.3	22	83	9	67	45	6	4	43	1.50
32525223--32525334	11	10.3	10	70	14	71	49	4	4	41	1.43
32525239--32525306	32	2.1	32	97	0	127	48	1	5	44	1.36
32525238--32525347	22	5.0	22	73	16	59	47	2	6	43	1.43
32525220--32525328	54	2.0	54	84	7	141	47	4	5	42	1.47
32525273--32525368	44	2.2	43	87	5	131	46	5	6	41	1.51
32525171--32525347	76	2.4	74	81	7	205	46	4	6	42	1.49
32525273--32525381	22	5.0	21	81	6	101	45	7	5	41	1.55
32525288--32525410	65	1.9	65	83	3	158	46	6	7	39	1.58
32525688--32525764	22	3.5	22	77	10	61	49	6	7	36	1.58
32525929--32525971	22	2.0	22	90	0	68	44	6	4	44	1.52
32525965--32526059	22	4.3	22	82	5	86	50	6	4	38	1.47
32525944--32526129	22	8.7	20	72	16	78	45	6	6	40	1.57
32526205--32526268	22	2.8	22	78	4	56	45	3	9	42	1.52
32532905--32533041	68	2.0	68	98	0	265	45	22	14	17	1.85
32533741--32533776	2	18.5	2	94	5	65	50	0	0	50	1.00
32536046--32536091	23	1.9	25	86	8	69	41	0	4	54	1.20
32539705--32539743	19	2.1	19	100	0	78	25	25	23	25	2.00
32539707--32539851	50	2.6	58	83	9	189	28	27	19	24	1.99
32539814--32540354	19	30.0	19	67	14	252	28	25	19	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32539814--32539924	37	3.0	37	94	1	186	27	23	19	28	1.98
32539907--32540002	31	3.3	31	68	19	87	28	23	20	27	1.99
32539705--32540386	182	3.7	182	88	7	1000	28	25	19	26	1.99
32540103--32540198	31	3.3	31	66	19	96	29	25	18	27	1.98
32539815--32540386	196	3.1	193	87	8	779	28	25	19	26	1.99
32540191--32540303	37	3.0	37	88	1	154	28	21	19	30	1.97
32540210--32540386	51	3.4	51	79	5	194	28	24	19	27	1.98
32540586--32540639	25	2.2	25	93	0	90	38	16	9	35	1.81
32544403--32544459	24	2.3	26	82	11	66	26	10	14	49	1.75
32557956--32558020	32	2.0	32	93	0	112	43	3	18	35	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160