genome.fa.s334.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  43  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9736611--9736720	34	3.5	31	77	14	100	33	3	1	60	1.24
9737581--9737663	6	14.3	6	72	19	61	16	1	3	78	0.96
9737586--9737663	23	3.6	22	78	20	85	17	1	3	76	1.00
9737741--9737782	18	2.4	17	81	14	50	83	2	9	4	0.88
9738547--9738597	3	17.0	3	100	0	102	66	0	0	33	0.92
9739764--9739793	12	2.4	13	94	5	53	50	6	6	36	1.55
9745023--9745052	10	2.8	11	95	5	53	30	10	20	40	1.85
9745680--9745792	34	3.3	34	86	0	145	39	15	5	39	1.69
9746914--9746949	6	5.8	6	87	6	54	2	16	0	80	0.83
9746869--9746927	21	2.8	20	75	10	64	3	20	1	74	1.05
9746877--9746950	34	2.1	35	82	9	89	4	20	1	74	1.06
9746871--9746967	24	3.9	24	72	11	70	5	20	1	73	1.09
9746995--9747033	10	3.8	10	93	3	60	7	7	0	84	0.77
9747006--9747045	11	3.7	11	90	9	57	5	10	0	85	0.75
9747142--9747184	22	2.0	21	86	9	59	2	13	0	83	0.74
9747142--9747183	21	2.0	22	90	4	68	2	14	0	83	0.75
9747131--9747187	8	7.2	8	80	9	64	1	15	0	82	0.75
9749748--9749805	11	5.1	11	80	14	64	77	3	5	13	1.07
9754257--9754342	24	3.8	23	76	14	90	39	9	16	34	1.80
9754250--9754338	43	2.1	43	95	4	162	40	7	16	34	1.78
9754704--9754765	24	2.6	24	80	10	65	29	1	6	62	1.29
9756402--9756696	146	2.0	146	100	0	590	43	10	8	37	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9758404--9758441	19	2.0	19	94	0	67	57	13	5	23	1.56
9763070--9763460	202	1.9	201	86	5	547	40	16	15	27	1.89
9764166--9764237	27	2.7	27	88	0	117	23	19	22	34	1.96
9776212--9776296	29	2.8	30	75	12	86	51	0	2	45	1.13
9776220--9776316	29	3.3	30	76	13	80	55	0	1	43	1.06
9776586--9776617	16	1.9	17	93	6	57	84	0	6	9	0.78
9776887--9776980	29	3.1	30	76	11	86	47	1	2	48	1.20
9776904--9777000	29	3.3	30	76	13	80	55	0	1	43	1.06
9776161--9778208	670	3.0	671	92	3	3356	48	9	7	34	1.64
9777557--9777650	29	3.1	30	76	11	86	47	1	2	48	1.20
9777574--9777670	29	3.3	30	76	13	80	55	0	1	43	1.06
9778352--9778388	17	2.2	17	90	4	58	78	0	10	10	0.97
9778350--9778389	16	2.5	15	84	11	53	75	0	10	15	1.05
9778350--9778396	16	2.9	16	75	9	51	74	0	8	17	1.05
9791024--9791076	23	2.2	24	83	10	72	73	0	3	22	0.99
9796157--9796185	2	14.5	2	100	0	58	51	0	0	48	1.00
9796173--9796411	119	2.0	119	100	0	478	45	10	14	30	1.77
9797935--9797979	22	2.0	22	86	0	63	26	11	24	37	1.89
9800562--9800616	15	3.7	15	72	16	51	20	0	30	49	1.49
9800594--9800644	8	6.5	8	78	13	52	15	0	33	50	1.44
9800594--9800651	16	3.6	16	81	6	73	17	0	32	50	1.46
9803036--9803209	32	5.3	33	70	8	115	32	13	19	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9803295--9803523	116	2.0	116	85	0	314	32	11	20	34	1.89
9804126--9804207	22	3.7	22	80	0	92	30	20	19	29	1.97
9804095--9804197	44	2.3	44	81	0	116	29	21	16	33	1.95
9804411--9804473	31	2.0	32	84	3	83	33	15	15	34	1.90
9804402--9804558	85	1.8	85	85	5	219	31	17	18	32	1.94
9804588--9804647	31	1.9	31	89	0	93	26	20	18	35	1.95
9804704--9804878	92	1.9	92	81	0	215	32	17	18	31	1.95
9804861--9804968	53	2.0	53	82	7	130	25	15	23	36	1.94
9805538--9805584	19	2.5	19	82	6	60	12	10	4	72	1.25
9805925--9805975	16	3.4	15	77	15	52	3	21	0	74	0.98
9807251--9807294	20	2.1	21	91	4	72	0	15	2	81	0.78
9810551--9810585	11	3.1	11	88	8	52	0	11	2	85	0.69
9810551--9810583	12	2.8	12	90	4	50	0	12	3	84	0.72
9812426--9812466	15	2.9	14	82	13	57	14	0	31	53	1.41
9812429--9812480	14	3.8	13	82	7	50	17	0	30	51	1.45
9812413--9812667	8	33.6	8	66	17	82	24	1	27	47	1.60
9812457--9812567	23	4.8	22	71	21	75	21	0	31	45	1.58
9812456--9812584	39	3.3	38	80	13	122	22	0	30	46	1.57
9812668--9812710	22	2.0	22	85	0	59	20	4	23	51	1.66
9812708--9812762	23	2.5	23	85	5	69	21	1	27	49	1.60
9813205--9813247	22	1.9	23	85	4	61	18	6	0	74	1.04
9814784--9814824	21	2.0	21	85	9	57	26	0	19	53	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9814888--9814941	7	7.7	7	80	14	58	16	0	37	46	1.48
9814877--9814946	27	2.6	27	90	2	113	15	0	35	48	1.46
9814877--9814954	27	2.9	27	84	5	104	15	0	35	48	1.45
9816207--9816274	12	5.6	11	75	14	55	79	1	13	5	0.98
9816677--9816725	19	2.6	18	80	6	53	69	6	0	24	1.11
9816648--9816845	99	2.0	104	82	8	248	59	7	5	27	1.48
9816909--9816950	14	2.9	14	89	3	57	76	0	7	16	1.00
9819512--9819796	118	2.4	116	90	4	437	34	12	7	46	1.68
9819512--9819796	58	4.8	58	87	6	412	34	12	7	46	1.68
9819823--9819948	18	6.8	18	68	20	71	75	3	3	17	1.09
9819826--9819948	22	5.5	22	66	16	65	75	4	3	17	1.09
9819813--9819992	17	10.2	17	70	11	80	76	3	4	15	1.10
9819917--9819994	26	3.0	26	75	14	79	80	5	3	10	0.99
9819933--9819991	18	3.4	18	77	11	52	81	5	5	8	0.98
9821020--9821050	4	7.8	4	92	0	53	74	0	3	22	0.96
9821299--9821336	16	2.4	16	87	12	60	2	0	7	89	0.57
9821345--9821597	41	6.1	41	87	5	341	37	23	15	23	1.93
9821345--9821597	123	2.0	125	88	6	381	37	23	15	23	1.93
9826589--9826927	59	5.7	59	82	8	429	34	13	6	45	1.70
9826591--9826938	118	2.9	118	90	3	529	35	12	6	45	1.68
9826965--9827112	10	13.7	11	68	17	55	75	4	4	16	1.10
9826955--9827036	6	13.7	6	72	13	62	79	1	4	14	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9827059--9827107	26	1.9	25	87	4	71	77	4	4	14	1.06
9827300--9827575	139	2.0	138	92	3	466	22	25	15	36	1.94
9828075--9828160	34	2.6	33	77	12	86	66	8	6	18	1.41
9828189--9828241	3	18.0	3	75	24	51	66	1	0	32	1.03
9828197--9828237	14	2.9	14	80	20	50	63	2	0	34	1.08
9828188--9828241	17	3.0	18	82	15	67	64	1	0	33	1.04
9831914--9831947	17	2.0	17	88	0	50	35	0	2	61	1.11
9833231--9833312	20	4.1	20	75	6	76	32	2	2	62	1.22
9833231--9833312	40	2.0	40	86	4	112	32	2	2	62	1.22
9833703--9833731	14	2.0	15	93	6	51	82	0	0	17	0.66
9833808--9833863	10	5.7	10	75	12	53	60	7	0	32	1.24
9833955--9834013	31	1.9	31	96	0	109	50	3	3	42	1.35
9834063--9834117	20	2.8	19	78	5	65	52	14	1	30	1.52
9855490--9855520	2	16.0	2	93	6	55	48	0	0	51	1.00
9858920--9858960	19	2.2	19	86	8	57	80	2	4	12	0.97
9859226--9859270	19	2.4	19	92	0	72	31	15	22	31	1.95
9859886--9859939	26	2.1	26	82	0	63	42	25	16	14	1.87
9859959--9860012	17	3.5	16	71	14	51	68	5	0	25	1.11
9860424--9860465	19	2.2	19	86	0	57	66	7	2	23	1.28
9860954--9861102	4	35.2	4	70	20	74	69	2	5	23	1.20
9860964--9861046	25	3.4	23	77	11	76	69	2	3	24	1.16
9861061--9861128	12	5.3	13	82	3	59	63	2	5	27	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9861402--9861511	39	2.8	40	88	1	159	44	19	12	23	1.85
9874384--9874456	26	2.6	29	72	21	66	64	12	5	17	1.45
9874480--9874536	4	14.2	4	82	10	55	75	0	7	17	1.02
9875794--9875832	16	2.4	16	91	0	60	46	5	12	35	1.65
9880701--9880811	31	3.5	31	81	3	134	36	1	7	54	1.39
9880794--9880835	22	1.9	22	85	9	59	47	0	2	50	1.14
9883107--9883146	14	2.6	16	88	11	57	25	2	0	72	0.97
9883807--9883854	4	11.8	4	78	12	53	22	6	2	68	1.23
9883807--9883854	19	2.6	18	87	9	62	22	6	2	68	1.23
9889166--9889211	20	2.4	19	88	3	65	50	8	6	34	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160