genome.fa.s25.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  106  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31673391--31673637	40	6.2	40	89	1	327	29	28	19	22	1.98
31682932--31682965	16	2.2	15	89	5	50	55	0	0	44	0.99
31701368--31701504	42	3.5	41	71	21	141	24	16	27	31	1.96
31701414--31701536	33	3.5	33	70	23	106	21	19	27	31	1.97
31701266--31701544	74	3.8	73	83	9	345	22	20	26	30	1.98
31707963--31708182	33	6.5	33	76	16	191	19	20	27	32	1.96
31716055--31716115	22	2.7	22	73	16	63	63	4	6	24	1.38
31716492--31716520	15	1.9	15	100	0	58	41	20	13	24	1.89
31716537--31716589	21	2.5	21	76	11	54	35	0	0	64	0.94
31716551--31716591	21	2.0	21	85	9	57	31	0	0	68	0.90
31736808--31736947	61	2.3	61	78	2	147	42	14	5	37	1.69
31740479--31740571	45	2.1	45	89	0	141	32	24	17	25	1.97
31740568--31740763	51	3.9	50	77	4	205	29	27	18	25	1.98
31740575--31740759	101	1.8	101	88	3	282	30	26	18	24	1.98
31749700--31749737	9	4.4	9	83	12	53	78	7	2	10	1.04
31749702--31749737	16	2.2	16	95	0	63	77	8	2	11	1.08
31750608--31750697	47	1.9	46	81	2	108	43	18	20	17	1.88
31752015--31753035	45	22.7	45	89	0	1459	29	15	23	30	1.96
31761993--31762274	138	2.0	138	97	0	537	43	13	11	31	1.80
31764286--31764323	20	1.9	20	89	10	60	60	5	0	34	1.19
31768827--31768866	20	2.0	20	100	0	80	35	15	25	25	1.94
31770659--31770707	19	2.6	19	83	6	55	36	0	46	16	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31772509--31772543	16	2.2	16	89	0	52	37	2	25	34	1.71
31774610--31774696	37	2.3	38	82	11	99	54	3	2	40	1.30
31774556--31774683	68	1.9	69	90	1	204	52	3	2	42	1.30
31784263--31784318	21	2.6	22	78	13	71	46	25	14	14	1.82
31784263--31784327	23	3.0	22	78	10	71	43	23	16	16	1.88
31784650--31784699	25	2.0	25	84	11	66	36	22	0	42	1.54
31784945--31784989	22	2.0	22	100	0	90	4	37	4	53	1.41
31800571--31800607	16	2.3	16	90	0	56	13	24	2	59	1.47
31802644--31802672	11	2.7	11	94	5	51	13	6	27	51	1.66
31802946--31802988	21	2.0	21	83	16	54	41	23	18	16	1.89
31811153--31811330	27	6.6	27	77	6	137	30	28	15	25	1.96
31811153--31811330	54	3.3	54	78	7	164	30	28	15	25	1.96
31819159--31819336	27	6.6	27	77	6	137	30	28	15	25	1.96
31819159--31819336	54	3.3	54	78	7	164	30	28	15	25	1.96
31821430--31821581	27	5.6	27	93	3	241	30	28	13	26	1.94
31821430--31821581	55	2.8	55	94	0	259	30	28	13	26	1.94
31822057--31822082	12	2.2	12	100	0	52	42	0	7	50	1.31
31822328--31822363	17	2.1	17	100	0	72	38	38	0	22	1.54
31823820--31823852	17	1.9	17	93	0	57	45	18	6	30	1.73
31825328--31825382	25	2.2	24	87	3	74	47	3	27	21	1.68
31827289--31827335	24	1.9	25	83	12	62	40	17	8	34	1.79
31838242--31838284	18	2.3	19	84	8	61	44	2	0	53	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31838411--31838519	41	2.6	43	77	12	111	25	15	24	33	1.95
31846532--31846673	70	2.0	70	94	2	250	41	9	19	29	1.83
31847040--31847129	23	4.1	23	71	11	98	45	6	26	21	1.76
31851581--31851670	23	4.1	23	71	11	98	45	6	26	21	1.76
31851600--31851683	42	2.0	42	95	0	150	45	8	22	23	1.79
31852156--31852195	6	6.7	6	100	0	80	0	0	17	82	0.67
31854373--31854399	13	2.1	13	100	0	54	14	14	0	70	1.17
31854427--31854473	6	7.5	6	90	9	76	14	17	0	68	1.22
31854373--31854517	75	2.0	76	82	10	185	28	16	2	51	1.58
31855363--31855425	30	2.1	30	93	0	108	55	15	3	25	1.55
31855455--31855497	22	2.0	22	85	0	59	58	11	11	18	1.63
31855462--31855502	11	3.7	11	80	0	55	56	9	14	19	1.66
31861089--31861272	37	5.2	36	71	13	141	30	22	19	26	1.98
31861109--31861296	104	1.8	104	95	0	340	29	21	19	28	1.98
31861973--31862013	6	7.3	6	83	10	52	80	0	19	0	0.71
31862480--31862522	9	4.7	9	97	2	77	32	0	2	65	1.06
31864669--31864700	6	5.3	6	100	0	64	0	0	15	84	0.63
31866828--31866902	26	2.9	25	84	4	87	37	24	21	17	1.94
31868532--31868570	20	2.0	20	90	10	62	56	5	23	15	1.59
31868566--31868699	66	2.0	66	100	0	268	46	2	15	35	1.61
31870273--31870312	21	1.9	21	89	0	62	45	17	0	37	1.49
31876747--31876780	16	2.1	17	88	5	52	26	8	17	47	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31879125--31879174	26	1.9	26	84	8	66	64	12	6	18	1.47
31894879--31894917	19	2.2	18	86	9	53	74	2	12	10	1.17
31895924--31895998	16	5.2	15	68	23	54	38	0	24	37	1.55
31915419--31915560	40	3.6	40	93	2	225	21	28	23	26	1.99
31918574--31918739	27	6.2	26	87	6	197	36	23	24	16	1.94
31918574--31918739	54	3.1	54	91	1	244	36	23	24	16	1.94
31918574--31918739	81	2.0	81	85	4	219	36	23	24	16	1.94
31920322--31920427	26	4.1	26	92	0	185	34	23	7	33	1.83
31920939--31920966	5	5.6	5	100	0	56	17	0	0	82	0.68
31938101--31938277	91	1.9	91	94	0	309	23	25	32	18	1.97
31938866--31938930	34	1.9	34	87	6	96	30	18	24	26	1.98
31945960--31946005	17	2.7	17	89	0	65	17	32	30	19	1.95
31961789--31961998	40	5.3	40	90	0	296	24	20	28	26	1.99
31963886--31964148	40	6.6	40	88	3	307	26	28	20	24	1.99
31964080--31964157	40	1.9	41	82	10	97	26	28	21	23	1.99
31979502--31979609	26	4.2	26	96	0	198	32	7	25	35	1.84
31981191--31981337	27	5.4	27	82	0	177	17	25	22	34	1.96
31981210--31981356	27	5.4	27	81	10	113	16	25	21	36	1.94
31981191--31981356	54	3.1	54	86	5	219	17	25	22	34	1.95
31981191--31981365	81	2.2	81	81	4	201	17	26	22	33	1.96
31984660--31984842	45	4.1	45	76	6	140	39	16	20	23	1.91
31986037--31986106	27	2.6	27	91	6	108	32	18	14	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31986101--31986206	53	2.0	54	88	1	160	18	17	22	40	1.91
31986069--31986206	27	5.1	27	80	1	152	21	18	21	39	1.93
31991691--31991812	46	2.6	46	83	7	131	27	19	28	23	1.98
31998694--31998820	55	2.3	55	83	6	159	29	25	29	15	1.96
32001933--32001976	16	2.8	16	100	0	88	36	6	31	25	1.82
32005345--32005466	46	2.6	46	83	7	131	27	19	28	23	1.98
32006692--32006730	21	1.9	21	89	5	62	12	33	28	25	1.93
32012337--32012463	55	2.3	55	83	6	159	29	25	29	15	1.96
32015777--32015811	15	2.3	15	100	0	70	25	5	14	54	1.62
32021004--32021121	46	2.5	46	84	9	134	24	28	16	29	1.97
32021044--32021168	46	2.7	45	81	7	117	24	30	17	27	1.97
32023285--32023360	27	2.9	27	86	2	73	30	19	17	32	1.95
32023295--32023371	27	2.9	27	88	0	109	25	19	20	33	1.96
32023323--32023433	27	4.1	27	77	4	109	18	18	23	38	1.93
32023377--32023619	81	3.0	80	89	2	378	22	25	18	34	1.96
32023457--32023512	26	2.1	27	93	3	96	23	19	17	39	1.92
32023295--32023512	27	8.1	27	72	12	99	22	21	20	36	1.95
32026077--32026119	13	3.3	13	86	0	59	32	34	18	13	1.90
32026084--32026125	13	3.2	13	86	0	57	30	40	16	11	1.85
32028186--32028437	68	3.8	65	78	9	203	24	28	17	29	1.97
32042110--32042301	40	4.8	40	77	0	204	27	26	20	25	1.99
32042081--32042302	80	2.8	80	89	2	331	27	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32056313--32056628	48	6.7	48	86	2	410	27	27	19	25	1.99
32061470--32061516	16	2.9	17	75	12	53	46	17	6	29	1.72
32061469--32061523	16	3.4	16	71	16	51	43	20	7	29	1.78
32068147--32068194	4	12.0	4	100	0	96	25	0	25	50	1.50
32080725--32080809	41	2.1	41	97	0	161	35	12	10	41	1.78
32087615--32087680	32	2.1	32	97	0	123	42	16	4	36	1.69
32089568--32089661	49	2.0	48	83	8	120	35	23	13	27	1.93
32091738--32091837	51	2.0	51	84	11	134	23	16	29	32	1.95
32095527--32095587	30	2.0	30	83	0	77	31	22	8	37	1.84
32097872--32097924	26	2.0	26	96	0	97	39	15	1	43	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214