genome.fa.s25.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  159  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47170582--47171229	251	2.6	251	85	1	897	38	16	16	29	1.90
47177006--47177036	16	1.9	16	93	0	53	25	9	0	64	1.24
47178953--47178999	24	1.9	24	83	12	60	44	0	4	51	1.21
47179279--47179357	13	6.2	13	75	11	56	40	18	3	36	1.69
47179248--47179344	50	1.9	50	87	0	140	38	17	4	40	1.69
47184909--47184961	16	3.4	16	71	10	56	66	3	5	24	1.31
47188006--47188143	38	3.4	39	77	15	154	31	18	15	34	1.92
47187963--47188143	84	2.2	83	90	2	283	29	20	16	33	1.94
47187961--47188158	46	4.5	46	85	11	274	29	20	16	33	1.94
47190295--47190324	13	2.3	13	94	0	51	66	0	3	30	1.07
47190762--47190792	16	1.9	16	93	0	53	61	0	3	35	1.12
47203208--47203243	2	18.0	2	100	0	72	50	0	50	0	1.00
47203733--47203761	13	2.2	13	100	0	58	58	0	13	27	1.36
47208999--47209102	45	2.3	45	91	0	163	32	16	12	38	1.86
47230955--47231125	88	1.9	88	85	2	236	28	19	25	25	1.99
47231442--47231691	44	5.8	44	74	12	151	28	19	23	28	1.98
47231570--47231712	45	3.2	44	84	5	164	29	20	25	24	1.99
47231638--47231730	45	2.1	45	85	0	123	32	22	24	20	1.98
47235021--47235155	58	2.3	57	81	6	146	16	2	25	55	1.52
47235051--47235155	29	3.6	29	85	0	138	16	1	21	60	1.46
47237373--47237466	29	3.3	30	75	21	87	31	0	6	61	1.21
47237419--47237559	54	2.5	57	80	11	146	36	1	2	58	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47237373--47237596	10	24.0	9	69	20	115	34	1	3	60	1.25
47246442--47246486	20	2.2	21	81	18	60	35	0	8	55	1.31
47246442--47246491	19	2.5	20	84	15	61	32	0	8	60	1.26
47251666--47251710	17	2.6	17	89	0	63	24	8	33	33	1.86
47266749--47266895	73	2.0	73	85	0	195	37	6	14	41	1.71
47269829--47269920	25	3.7	25	69	11	62	17	29	18	34	1.94
47272040--47272184	42	3.4	42	83	3	184	31	13	25	29	1.93
47285950--47286041	40	2.3	40	82	0	121	32	20	3	43	1.68
47286011--47286058	13	3.7	13	80	5	53	43	20	2	33	1.64
47286004--47286065	26	2.3	27	83	10	83	37	19	1	41	1.61
47287403--47287455	18	2.9	18	80	2	61	41	45	1	11	1.51
47287559--47287625	18	3.7	18	89	0	107	23	8	25	41	1.83
47287559--47287625	9	7.4	9	81	0	80	23	8	25	41	1.83
47300979--47301081	44	2.3	45	84	3	127	30	21	13	34	1.92
47301001--47301086	46	1.9	44	90	4	136	29	24	13	32	1.94
47303448--47303526	32	2.5	32	84	10	108	31	20	17	30	1.96
47312658--47312698	21	2.0	21	90	0	64	29	21	29	19	1.98
47316536--47316613	38	2.1	38	100	0	156	61	2	5	30	1.31
47318742--47318873	44	3.0	43	70	17	119	25	25	21	27	2.00
47318757--47318891	44	3.1	43	66	16	105	24	22	24	28	1.99
47318931--47319065	42	3.2	42	69	10	139	26	22	22	27	2.00
47318681--47319070	88	4.5	86	85	5	439	25	23	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47321172--47321235	20	3.4	18	73	16	58	12	6	6	75	1.19
47321189--47321233	21	2.2	20	88	4	63	11	4	4	80	1.01
47325640--47325702	21	3.2	21	67	28	66	57	3	4	34	1.36
47325635--47325711	37	2.1	38	97	2	147	61	2	5	31	1.32
47331660--47331695	17	2.1	18	89	5	56	11	41	33	13	1.80
47331918--47331966	24	2.0	24	100	0	98	12	30	4	53	1.57
47363867--47363909	18	2.4	18	100	0	86	37	18	4	39	1.72
47372530--47372596	34	1.9	34	84	6	89	56	4	1	37	1.29
47375891--47375925	2	17.5	2	100	0	70	0	51	0	48	1.00
47378965--47378990	3	8.7	3	100	0	52	30	0	0	69	0.89
47382417--47382554	41	3.4	40	87	4	195	24	26	18	30	1.98
47386026--47386134	57	1.9	58	84	5	150	30	12	22	33	1.92
47386026--47386157	57	2.3	57	81	10	144	29	12	21	35	1.91
47386364--47386864	69	7.3	69	79	1	439	18	20	26	34	1.96
47386364--47386857	138	3.6	138	79	1	506	18	20	26	34	1.95
47386380--47386864	207	2.3	207	80	2	535	18	20	26	34	1.95
47387776--47387832	21	2.7	20	76	10	51	61	5	3	29	1.35
47388737--47388766	5	6.0	5	96	0	51	23	0	20	56	1.42
47404510--47404635	42	3.0	42	83	2	164	24	10	20	44	1.83
47407123--47407166	24	1.9	24	81	9	56	29	2	9	59	1.41
47407651--47407699	25	1.9	26	84	12	66	30	4	20	44	1.70
47410464--47410509	24	2.0	22	84	12	58	36	10	28	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47410469--47410516	24	2.0	24	87	0	69	45	10	22	20	1.81
47410612--47410735	42	2.9	43	86	2	162	16	20	18	44	1.87
47410607--47410714	21	5.1	21	67	4	65	15	23	17	43	1.87
47417134--47417259	66	1.9	66	100	0	252	26	37	18	18	1.93
47417381--47417528	57	2.5	60	83	9	196	22	25	21	30	1.99
47425533--47425738	101	2.0	101	96	0	376	33	18	16	31	1.93
47432601--47432633	3	11.0	3	100	0	66	66	0	0	33	0.92
47432766--47432806	21	2.0	21	85	0	55	43	0	2	53	1.13
47432763--47432812	21	2.4	21	75	15	50	44	0	2	54	1.11
47432838--47432877	17	2.2	19	86	13	57	60	0	0	40	0.97
47432899--47432950	26	2.0	27	84	3	70	53	1	1	42	1.23
47432893--47432933	22	1.9	21	85	5	55	51	2	0	46	1.14
47432951--47432993	22	2.0	22	86	9	61	44	0	2	53	1.13
47440042--47440069	14	2.0	14	100	0	56	50	0	21	28	1.49
47442733--47442780	20	2.3	21	85	7	62	56	0	6	37	1.25
47444775--47444813	20	2.0	20	89	0	60	30	25	35	7	1.84
47453015--47453048	14	2.5	14	95	4	61	14	0	35	50	1.44
47453178--47453224	22	2.1	23	84	4	60	70	6	6	17	1.30
47455156--47455220	27	2.4	27	73	17	62	12	12	3	72	1.24
47459937--47459966	15	1.9	16	93	6	53	26	0	0	73	0.84
47473894--47473955	26	2.4	26	86	0	88	33	12	16	37	1.87
47474018--47474081	31	2.0	33	82	11	80	39	12	28	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47474164--47474196	17	1.9	17	93	0	57	42	6	0	51	1.26
47482699--47482728	13	2.3	13	94	0	51	23	10	13	53	1.69
47486403--47486444	9	4.7	9	87	0	66	45	19	9	26	1.80
47486521--47486574	18	2.9	18	80	2	63	12	1	44	40	1.54
47487260--47487323	30	2.1	30	100	0	128	51	15	3	29	1.59
47489073--47489165	42	2.2	42	80	0	105	16	23	20	39	1.91
47497099--47497142	20	2.1	21	87	4	63	68	0	2	29	1.02
47499138--47499177	21	1.9	21	90	10	64	67	5	0	27	1.11
47499307--47499339	12	2.8	12	86	13	50	30	0	3	66	1.06
47501767--47501791	2	12.5	2	100	0	50	52	0	0	48	1.00
47513749--47513880	41	3.2	41	78	15	137	33	24	15	27	1.95
47515807--47515856	25	1.9	27	84	8	68	40	12	10	38	1.76
47517820--47517935	43	2.7	43	84	7	155	22	18	30	28	1.98
47519245--47519280	15	2.5	14	86	8	54	44	8	0	47	1.33
47528757--47528793	18	2.1	18	89	0	56	56	13	0	29	1.37
47528951--47529019	27	2.5	28	81	9	72	28	31	1	37	1.66
47529337--47529373	19	1.9	19	94	0	65	29	8	27	35	1.85
47534996--47535040	23	2.0	23	83	8	58	44	13	2	40	1.56
47536254--47536291	17	2.2	17	90	0	58	60	0	26	13	1.33
47550654--47550691	19	2.0	19	94	0	67	31	7	26	34	1.85
47552808--47552833	9	2.9	9	100	0	52	46	46	7	0	1.31
47561192--47561236	23	2.0	23	83	8	58	44	13	2	40	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47571756--47571789	16	2.1	16	89	10	52	50	11	2	35	1.54
47572662--47572705	17	2.7	16	78	3	52	84	2	2	11	0.81
47573908--47573933	9	2.9	9	100	0	52	46	46	7	0	1.31
47582304--47582348	23	2.0	23	83	8	58	44	13	2	40	1.56
47583561--47583598	17	2.2	17	90	0	58	60	0	26	13	1.33
47592895--47592940	24	2.0	23	86	4	65	39	15	8	36	1.78
47593486--47593523	19	2.0	19	94	0	67	31	7	26	34	1.85
47596971--47597023	23	2.3	23	77	6	54	60	0	5	33	1.20
47599471--47599507	18	2.1	18	90	5	58	16	27	40	16	1.89
47601510--47601555	21	2.1	21	88	4	65	21	23	21	32	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214