Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  182  of  214  ( 25680 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53437117--53437164
20
2.4
20
92
0
78
43
0
20
35
1.52
53437397--53437453
23
2.5
23
80
8
64
38
1
3
56
1.27
53437397--53437453
22
2.6
23
81
13
66
38
1
3
56
1.27
53439678--53439714
9
4.1
9
92
0
65
29
10
13
45
1.77
53439768--53439798
9
3.4
9
90
0
53
38
22
12
25
1.90
53449028--53449084
29
2.0
29
82
6
71
61
0
5
33
1.18
53454142--53454182
21
2.0
21
90
0
64
56
7
21
14
1.63
53456826--53456872
12
3.9
12
78
8
51
53
0
0
46
1.00
53466963--53467044
26
3.2
25
70
14
60
43
1
6
48
1.35
53469443--53469468
13
2.0
13
100
0
52
61
30
0
7
1.24
53473548--53473577
7
4.3
7
95
0
51
46
30
0
23
1.52
53479820--53479844
6
4.2
6
100
0
50
0
16
0
84
0.63
53482761--53482804
19
2.1
21
88
12
65
52
0
0
47
1.00
53482772--53482879
57
1.9
57
83
11
141
52
0
0
46
1.06
53482759--53482884
19
6.8
19
63
27
56
49
0
0
50
1.06
53484691--53484745
21
2.6
21
73
0
56
12
23
40
23
1.89
53484870--53484914
22
2.0
22
82
0
54
13
35
22
28
1.92
53488064--53488103
20
2.0
20
90
0
62
27
10
12
50
1.72
53488049--53488115
34
1.9
35
90
3
109
31
8
13
46
1.74
53488043--53488119
14
5.0
15
71
20
52
33
9
14
42
1.77
53488819--53488953
48
2.8
47
79
3
137
37
15
21
25
1.93
53496592--53496625
7
4.7
7
85
7
50
17
0
2
79
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53496592--53496625
15
2.3
15
90
5
52
17
0
2
79
0.86
53498223--53498269
19
2.6
18
83
6
58
29
2
2
65
1.15
53498237--53498275
18
2.1
19
85
4
53
25
2
2
69
1.14
53498237--53498276
19
2.1
19
86
9
55
25
2
2
70
1.13
53500381--53500411
5
6.2
5
100
0
62
58
41
0
0
0.98
53506239--53506296
28
2.1
28
100
0
116
62
10
10
17
1.54
53506607--53506661
26
2.2
25
83
9
67
50
1
1
45
1.22
53514121--53514204
27
3.0
28
80
13
91
22
3
1
72
1.07
53514112--53514190
5
15.6
5
76
17
58
20
2
1
75
0.98
53514116--53514200
32
2.7
32
83
10
102
21
3
1
74
1.04
53515327--53515519
101
1.9
100
87
7
280
26
13
26
32
1.94
53516092--53516126
15
2.4
15
90
4
54
48
0
8
42
1.33
53518291--53518351
26
2.4
26
88
2
88
31
11
13
44
1.79
53518624--53518652
9
3.0
10
90
10
51
20
20
0
58
1.39
53520653--53520704
19
2.7
20
85
8
63
32
3
0
63
1.12
53522184--53522232
23
2.2
22
82
7
55
30
2
2
65
1.15
53522883--53522925
23
1.9
23
85
4
61
65
2
2
30
1.18
53530521--53530696
90
1.9
92
84
4
239
37
18
7
36
1.80
53530632--53530764
69
2.0
68
83
3
169
33
21
8
36
1.84
53530632--53530775
68
2.1
68
82
5
166
34
22
7
36
1.83
53530381--53531079
257
2.8
254
87
4
979
35
18
7
38
1.79
53530697--53530951
93
2.7
94
84
4
329
35
19
7
38
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53531490--53531529
20
2.0
20
85
4
55
32
2
2
62
1.22
53531662--53531742
35
2.3
35
91
0
135
41
14
9
33
1.79
53531828--53531857
11
2.7
11
100
0
60
0
16
0
83
0.65
53532202--53532265
29
2.1
29
83
11
76
51
6
12
29
1.64
53541731--53541771
21
1.9
22
85
5
57
41
0
7
51
1.30
53544352--53544396
16
2.8
16
89
0
63
40
4
24
31
1.75
53561317--53561353
16
2.3
17
81
13
51
54
0
5
40
1.24
53561385--53561441
15
3.5
15
71
17
51
49
1
1
47
1.22
53564840--53564871
5
6.4
5
100
0
64
18
0
0
81
0.70
53564843--53564878
15
2.4
15
90
0
54
19
2
0
77
0.88
53570454--53570534
25
3.2
25
65
22
69
48
11
14
25
1.77
53570440--53570543
51
2.0
51
98
0
199
50
9
13
26
1.72
53581445--53581503
31
1.9
31
92
0
100
54
5
22
18
1.63
53582879--53582938
28
2.1
29
81
9
70
48
8
5
38
1.55
53585295--53585358
22
2.9
22
75
11
67
40
6
1
51
1.36
53586621--53586795
41
4.3
41
91
0
287
24
27
20
28
1.99
53588742--53588840
23
4.3
23
88
5
155
32
27
20
20
1.97
53588748--53588837
46
2.0
46
97
0
171
32
27
20
20
1.97
53589454--53589490
18
2.1
18
90
5
58
27
27
2
43
1.68
53589155--53590175
510
2.0
510
99
0
2006
36
19
5
38
1.75
53593605--53593632
13
2.2
13
100
0
56
46
25
7
21
1.76
53595804--53595846
21
2.0
22
86
4
61
44
20
0
34
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53603602--53603695
45
2.1
45
93
0
161
30
24
19
25
1.98
53603697--53603882
50
3.7
49
79
9
162
31
24
17
25
1.97
53604931--53604975
23
2.0
23
86
0
63
35
8
6
48
1.61
53614159--53614227
36
1.9
36
85
5
95
28
0
4
66
1.10
53614185--53614245
26
2.3
26
81
10
70
29
0
8
62
1.24
53615934--53616210
46
6.0
46
94
0
464
28
26
9
35
1.88
53618297--53618338
21
2.0
21
85
0
57
45
11
4
38
1.62
53623377--53623633
71
3.6
71
85
2
284
30
24
12
33
1.92
53626897--53626952
26
2.1
27
83
6
71
35
0
0
64
0.94
53627051--53627085
18
1.9
18
94
0
61
62
5
0
31
1.18
53631096--53631126
15
2.1
15
100
0
62
48
6
0
45
1.28
53631621--53631656
17
2.2
17
95
5
65
25
2
22
50
1.63
53632328--53632456
46
2.8
45
89
4
195
34
8
27
29
1.86
53638928--53638955
10
2.8
10
100
0
56
64
7
17
10
1.47
53639701--53639746
22
2.1
21
84
4
56
17
4
19
58
1.55
53639732--53639815
23
3.7
23
88
0
132
20
7
28
44
1.78
53644288--53644335
26
1.9
25
84
16
64
45
0
2
52
1.12
53644363--53644435
28
2.7
27
68
19
62
41
2
1
54
1.23
53644376--53644668
120
2.4
119
92
5
468
41
2
5
49
1.41
53644501--53644552
15
3.6
15
80
12
56
44
0
1
53
1.11
53644630--53644671
15
2.7
16
82
14
52
45
0
2
52
1.13
53644621--53644662
15
2.9
15
82
10
52
47
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53644806--53644845
16
2.5
16
87
0
62
52
10
0
37
1.35
53644877--53644911
18
2.0
17
88
5
52
45
0
0
54
0.99
53648332--53648410
21
3.8
21
74
0
77
18
18
20
41
1.90
53648334--53648427
42
2.2
42
88
0
134
18
19
21
41
1.90
53648359--53648504
77
1.9
78
81
4
179
19
21
18
41
1.91
53659254--53659286
16
2.1
16
100
0
66
39
6
6
48
1.53
53666104--53666203
42
2.4
42
89
0
146
38
15
26
21
1.92
53668311--53668383
33
2.2
33
88
9
105
39
1
6
52
1.37
53668693--53668744
25
2.1
25
85
7
70
67
3
28
0
1.08
53669617--53669747
38
3.4
39
76
7
115
22
18
27
31
1.97
53677324--53677387
20
3.2
20
80
4
76
21
4
29
43
1.73
53683742--53683801
30
2.0
29
84
9
77
41
6
25
26
1.80
53684137--53684329
50
3.8
50
87
0
278
26
21
30
21
1.98
53693919--53693956
16
2.4
16
90
0
58
36
23
7
31
1.84
53698463--53698500
16
2.4
16
90
0
58
36
23
7
31
1.84
53699543--53699584
22
1.9
22
85
9
59
38
0
4
57
1.20
53699714--53699771
26
2.2
28
84
9
77
51
0
3
44
1.18
53701031--53701061
13
2.4
13
100
0
62
61
32
0
6
1.21
53701575--53701751
46
3.8
46
90
3
257
28
25
9
36
1.86
53702511--53702554
17
2.6
17
82
3
54
50
22
2
25
1.61
53703751--53703823
31
2.4
30
84
9
85
45
12
12
30
1.78
53712854--53712908
11
5.0
11
79
0
65
29
32
0
38
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53712843--53712907
22
2.9
22
74
2
67
29
29
0
41
1.56
53714088--53714112
7
3.6
7
100
0
50
28
0
16
56
1.41
53714754--53714796
18
2.4
18
88
0
59
20
25
6
46
1.76
53716100--53716184
44
1.9
44
88
4
127
24
22
25
27
2.00
53716134--53716431
125
2.4
126
88
0
427
26
21
19
32
1.97
53716467--53716696
95
2.4
95
83
2
273
39
18
3
38
1.68
53716467--53716740
95
2.9
95
77
4
221
41
17
3
37
1.66
53723728--53723764
18
2.1
17
90
10
56
32
0
5
62
1.18
53733107--53733343
124
1.9
121
89
2
366
27
14
16
41
1.87
53734770--53734892
60
2.0
60
95
0
219
21
26
17
34
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214