genome.fa.s25.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  107  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32097899--32098000	49	2.1	49	100	0	204	39	24	3	32	1.74
32110715--32110761	22	2.2	21	88	7	69	38	14	27	19	1.91
32110721--32110764	22	2.0	22	100	0	88	36	18	22	22	1.95
32116627--32116795	43	3.9	44	77	10	179	30	26	18	25	1.98
32116631--32116789	86	1.9	85	84	6	214	30	25	18	25	1.98
32121107--32121318	40	5.3	40	85	3	259	23	19	27	28	1.98
32129388--32129599	40	5.3	40	85	6	252	24	19	27	28	1.99
32138923--32139079	43	3.7	41	81	8	147	32	24	18	24	1.97
32145057--32145139	44	1.9	43	83	11	107	14	21	0	63	1.29
32145140--32145169	13	2.3	13	100	0	60	60	0	0	40	0.97
32149607--32149726	47	2.7	45	82	8	147	25	30	20	25	1.99
32155011--32155062	27	2.0	26	84	3	68	26	21	19	32	1.97
32155660--32155711	27	2.0	26	84	3	68	17	26	21	34	1.95
32155727--32155790	33	2.0	32	84	3	83	20	25	20	34	1.96
32157532--32157658	43	3.0	42	80	3	146	33	24	17	25	1.96
32157531--32157689	43	3.7	42	75	8	124	30	26	18	24	1.98
32164505--32164551	23	2.0	23	100	0	94	29	21	12	36	1.91
32165740--32165799	30	2.0	30	96	0	111	45	13	15	26	1.83
32167751--32167841	42	2.1	43	83	4	121	36	27	14	21	1.92
32169186--32169235	22	2.1	25	85	10	70	6	34	0	60	1.21
32170679--32170778	20	5.1	20	81	1	76	24	21	21	34	1.97
32170605--32170774	40	4.2	40	77	7	175	21	22	21	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32174084--32174259	46	3.8	46	79	12	216	20	21	29	28	1.98
32174081--32174252	93	1.8	93	96	0	317	20	21	29	27	1.98
32177009--32177109	6	16.8	6	75	19	95	49	14	14	20	1.79
32177009--32177109	30	3.4	30	93	2	168	49	14	14	20	1.79
32177227--32177292	27	2.5	26	85	7	87	37	22	22	16	1.93
32177227--32177300	27	2.8	27	78	13	82	36	21	24	17	1.95
32177251--32177308	27	2.1	27	84	6	73	36	27	20	15	1.93
32177465--32177523	22	2.7	22	81	0	64	33	22	22	22	1.97
32177611--32177693	27	3.1	26	86	5	103	37	20	21	20	1.95
32177892--32178007	27	4.3	27	80	4	126	25	19	18	36	1.95
32178011--32178275	27	9.8	27	82	4	311	41	10	21	26	1.84
32178011--32178289	81	3.4	81	84	4	375	41	10	21	26	1.85
32180559--32180913	46	7.7	47	88	3	463	19	23	15	41	1.90
32180564--32180913	138	2.5	138	88	0	520	19	23	15	41	1.89
32180858--32180954	30	3.2	30	63	25	78	22	24	14	38	1.92
32180888--32180924	14	2.5	15	86	13	58	21	27	16	35	1.94
32180896--32180927	14	2.3	14	100	0	64	18	28	12	40	1.87
32180850--32180973	60	2.1	60	98	0	239	22	24	12	40	1.89
32194533--32194622	41	2.2	41	91	0	144	22	25	23	28	1.99
32195803--32195836	16	2.0	17	88	11	52	17	23	38	20	1.93
32197232--32197403	46	3.7	46	78	13	199	20	19	29	29	1.97
32197225--32197396	93	1.8	93	93	0	299	21	20	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32204796--32204967	46	3.7	46	77	13	181	20	19	29	29	1.97
32204789--32204960	93	1.8	93	91	0	281	21	20	29	28	1.98
32216801--32216972	40	4.3	40	88	2	222	25	27	21	25	1.99
32216803--32217025	40	5.6	39	83	5	216	25	27	21	25	1.99
32216801--32217025	80	2.8	79	80	7	240	25	27	21	25	1.99
32216957--32217034	40	1.9	41	82	10	97	26	28	20	24	1.99
32232436--32232616	28	6.6	27	91	3	263	30	28	12	28	1.93
32232459--32232641	56	3.3	54	85	7	233	31	28	12	27	1.93
32232436--32232641	84	2.5	84	87	4	265	31	28	12	27	1.93
32240468--32240619	27	5.6	27	92	3	232	30	28	13	27	1.94
32240468--32240644	55	3.2	55	89	0	246	31	29	12	26	1.93
32248463--32248614	27	5.6	27	92	3	232	30	28	13	27	1.94
32248463--32248639	55	3.2	55	89	0	246	31	29	12	26	1.93
32252642--32252922	126	2.2	126	91	1	456	29	20	17	32	1.96
32252954--32253382	193	2.2	191	88	3	630	38	18	2	41	1.62
32252954--32253382	96	4.5	97	88	5	606	38	18	2	41	1.62
32257561--32257594	4	8.5	4	93	0	59	50	20	0	29	1.49
32267463--32267575	50	2.2	50	85	1	154	38	6	30	25	1.80
32270093--32270125	14	2.4	14	100	0	66	36	33	18	12	1.88
32278944--32278987	21	2.1	21	87	4	63	9	25	13	52	1.70
32280329--32280406	20	4.1	18	76	14	84	61	1	5	32	1.26
32280329--32280517	9	19.7	9	68	16	62	59	1	6	32	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32282009--32282068	31	1.9	31	86	0	84	30	1	0	68	0.99
32282077--32282119	19	2.5	16	85	14	59	39	0	0	60	0.97
32282762--32282802	19	2.1	20	86	13	59	41	0	4	53	1.22
32282867--32282911	22	2.0	23	83	12	58	51	2	4	42	1.34
32284420--32284457	19	2.0	19	100	0	76	52	15	5	26	1.64
32285372--32285423	26	2.0	26	92	0	86	42	17	9	30	1.81
32288565--32288601	17	2.1	17	95	5	65	67	5	0	27	1.12
32288639--32288689	3	16.7	3	87	4	75	62	0	3	33	1.13
32289993--32290071	39	2.0	39	100	0	158	32	5	20	41	1.74
32290708--32291298	44	13.7	44	79	8	561	28	24	17	29	1.97
32290754--32291263	170	3.0	170	78	11	653	28	24	16	30	1.97
32290708--32291298	126	4.6	128	83	6	651	28	24	17	29	1.97
32291312--32291707	88	4.5	88	89	1	589	20	24	26	28	1.99
32291312--32291707	175	2.3	176	88	1	589	20	24	26	28	1.99
32292792--32292890	42	2.4	42	79	3	101	25	24	14	36	1.93
32297439--32297475	17	2.1	17	95	5	65	67	5	0	27	1.12
32297565--32297596	3	10.7	3	100	0	64	68	0	31	0	0.90
32303075--32303294	27	8.2	27	77	6	169	40	18	15	24	1.90
32303075--32303280	81	2.6	81	81	2	245	42	17	16	23	1.89
32303458--32303523	26	2.5	26	87	0	87	16	22	22	37	1.93
32304183--32304223	20	2.0	20	95	0	73	41	14	19	24	1.89
32309874--32309923	18	2.6	19	81	15	59	6	26	2	66	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32310798--32310997	27	7.4	27	84	1	251	44	16	16	23	1.86
32310798--32311020	27	8.3	27	82	6	109	43	16	16	23	1.87
32316197--32316228	7	4.6	7	96	0	55	71	3	0	25	1.00
32320369--32320561	51	3.8	50	81	2	224	29	25	17	27	1.98
32323045--32323097	16	3.1	16	79	15	52	56	0	1	41	1.10
32323058--32323096	20	2.0	20	94	0	69	48	0	2	48	1.15
32323194--32323232	19	2.1	19	95	0	69	43	12	10	33	1.77
32323216--32323253	14	2.7	14	91	0	58	36	18	7	36	1.80
32327294--32327405	6	18.3	6	98	1	206	83	0	0	16	0.64
32327298--32327405	1	108.0	1	68	0	63	84	0	0	15	0.63
32329757--32330019	39	6.7	40	87	6	326	25	22	26	24	2.00
32337185--32337408	40	5.7	40	85	8	266	25	22	27	25	2.00
32337185--32337408	79	2.8	80	84	9	287	25	22	27	25	2.00
32337185--32337441	79	3.3	79	81	10	217	26	22	27	24	2.00
32346468--32346536	29	2.4	29	87	4	95	34	27	10	27	1.89
32357419--32357488	27	2.7	26	84	4	88	32	25	21	20	1.97
32366719--32366814	50	1.9	50	84	0	129	47	12	10	29	1.74
32370025--32370082	26	2.2	26	87	0	80	29	27	24	18	1.98
32383119--32383311	51	3.8	50	85	4	235	31	27	15	25	1.96
32390454--32390511	25	2.3	25	85	5	73	25	22	22	29	1.99
32395247--32395305	29	2.0	29	93	0	100	10	27	6	55	1.58
32414249--32414418	39	4.4	39	84	0	232	32	15	34	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32414329--32414418	19	4.6	20	68	10	69	30	15	36	17	1.91
32421249--32421310	20	3.1	20	80	0	70	35	14	35	14	1.87
32421324--32421364	20	2.0	20	90	0	64	36	24	31	7	1.83
32425664--32426666	250	4.0	251	87	1	1422	39	13	15	32	1.86
32442255--32442317	25	2.6	25	77	7	67	23	26	20	28	1.99
32445061--32445246	40	4.7	40	86	5	234	24	22	27	25	2.00
32445114--32445279	80	2.1	79	84	5	210	26	20	27	25	1.99
32452994--32453179	40	4.7	40	88	5	243	24	22	27	25	1.99
32452994--32453212	80	2.7	79	81	7	221	25	21	27	25	1.99
32456970--32457021	20	2.5	22	84	6	72	42	21	9	26	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214