genome.fa.s25.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  135  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41007082--41007326	84	2.9	85	84	9	347	19	35	28	17	1.94
41011132--41011532	42	9.5	42	72	9	181	19	33	28	17	1.95
41011181--41011406	84	2.7	83	79	6	238	21	34	26	16	1.95
41011265--41011532	127	2.1	126	80	6	292	19	34	27	17	1.95
41011161--41011545	211	1.8	212	84	2	524	20	33	29	17	1.95
41011395--41011563	85	2.0	85	79	4	180	18	32	31	17	1.94
41011551--41011625	24	3.1	24	78	0	87	16	36	38	9	1.80
41011837--41012071	42	5.6	42	72	12	187	19	34	26	19	1.96
41011848--41012069	84	2.6	85	83	8	299	19	35	26	18	1.95
41013241--41013304	17	3.6	17	74	15	67	46	12	12	28	1.78
41013259--41013312	17	3.1	17	70	19	56	46	14	12	25	1.81
41013244--41013312	36	1.9	36	96	0	129	46	13	13	27	1.79
41018476--41018507	14	2.3	14	100	0	64	6	15	46	31	1.71
41025441--41026087	43	15.2	43	73	8	334	18	34	30	16	1.93
41025550--41026100	128	4.3	127	74	7	420	18	32	31	16	1.94
41025441--41026100	85	7.7	85	78	4	591	19	34	30	16	1.93
41026392--41026683	42	6.9	43	74	10	235	19	34	27	18	1.95
41026401--41026683	85	3.3	84	81	7	331	20	34	27	18	1.95
41029438--41029895	43	10.7	42	69	7	271	18	34	30	16	1.93
41029438--41029895	85	5.4	84	74	7	311	18	34	30	16	1.93
41029852--41029934	33	2.5	33	88	3	114	19	34	32	13	1.90
41029772--41029992	118	1.9	117	83	4	284	19	32	30	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41030055--41030127	24	3.0	23	75	15	67	21	31	38	8	1.83
41030337--41030670	42	7.9	42	76	9	268	21	33	26	18	1.97
41038105--41038222	35	3.2	35	86	7	155	18	35	33	12	1.89
41038147--41039279	42	26.9	42	75	10	829	18	33	30	17	1.94
41038144--41039279	85	13.5	85	76	8	764	19	33	30	17	1.94
41039292--41039338	24	2.0	24	86	0	67	19	31	38	10	1.86
41045164--41045209	19	2.4	18	75	10	56	56	15	17	10	1.67
41045712--41046045	42	7.9	42	76	10	315	20	33	27	17	1.95
41051517--41052795	85	15.0	84	78	5	1005	18	33	30	16	1.94
41051520--41052795	298	4.3	297	79	5	1193	18	33	30	16	1.94
41051533--41052740	341	3.5	338	83	4	1297	18	33	30	16	1.94
41051497--41052782	43	30.2	41	74	6	625	18	33	30	16	1.94
41052811--41052873	24	2.6	24	84	0	81	25	36	31	6	1.81
41053085--41053377	42	6.9	42	74	12	233	20	33	27	19	1.96
41053094--41053377	85	3.3	84	81	8	326	20	33	27	18	1.96
41058119--41058160	21	2.0	22	90	4	68	30	4	26	38	1.77
41060414--41060455	6	6.8	6	81	13	50	21	2	0	76	0.90
41066877--41066913	19	1.9	19	88	0	56	18	2	13	64	1.39
41068155--41068192	19	2.0	19	100	0	76	42	5	5	47	1.48
41074021--41074050	14	2.1	14	93	0	51	50	3	6	40	1.45
41075626--41075706	36	2.2	36	82	0	99	33	25	22	18	1.97
41084334--41084518	101	1.8	102	91	3	311	24	17	27	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41084332--41084516	51	3.6	51	83	3	214	24	17	27	30	1.97
41084440--41084520	26	3.2	26	62	28	64	23	14	28	33	1.94
41084527--41084615	45	2.0	45	86	0	124	25	17	22	33	1.96
41086080--41086115	13	2.8	13	95	0	63	41	0	25	33	1.55
41098514--41098567	27	2.0	27	96	0	99	61	14	12	11	1.58
41102384--41102438	2	27.5	2	100	0	110	0	49	0	50	1.00
41103309--41103432	65	1.9	65	83	6	162	24	16	8	50	1.73
41103964--41104008	20	2.2	22	80	15	60	28	2	2	66	1.15
41105815--41105850	16	2.2	16	90	0	54	36	2	0	61	1.11
41114792--41115854	100	10.7	100	92	1	1742	29	19	24	26	1.98
41114814--41115864	50	21.1	50	70	5	647	29	19	24	26	1.98
41115871--41116375	132	3.8	132	90	1	780	29	21	23	26	1.99
41115898--41116479	132	4.4	129	82	7	538	29	19	24	26	1.99
41115877--41116479	264	2.3	264	85	4	745	29	20	23	26	1.99
41124831--41124866	16	2.2	16	90	0	54	36	2	0	61	1.11
41135486--41135538	23	2.4	22	76	20	56	9	18	1	69	1.25
41139070--41139198	61	2.2	58	83	6	152	44	0	4	50	1.28
41140910--41140986	19	3.7	21	80	13	77	41	16	5	36	1.71
41140910--41140967	22	2.6	22	84	7	73	43	17	3	36	1.66
41140923--41140992	19	3.5	19	88	7	86	40	15	7	37	1.75
41140946--41140996	19	2.7	19	96	0	93	37	15	9	37	1.81
41141540--41141745	44	4.8	44	73	11	174	27	21	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41141755--41142336	45	12.9	45	85	0	689	29	21	17	31	1.96
41141758--41142336	90	6.4	90	89	1	811	30	21	17	31	1.96
41147188--41147216	13	2.1	14	93	6	51	17	0	0	82	0.66
41148004--41148046	21	2.0	21	86	0	59	23	11	2	62	1.40
41148106--41148166	25	2.4	25	83	0	77	37	6	1	54	1.37
41148201--41148271	10	7.0	10	75	12	56	38	5	0	56	1.23
41151099--41151137	3	13.0	3	100	0	78	66	0	0	33	0.92
41151407--41151496	42	2.1	41	80	13	103	57	1	6	34	1.32
41152085--41152150	19	3.4	19	89	8	105	36	13	12	37	1.82
41158432--41158491	31	1.9	31	100	0	120	16	13	36	33	1.88
41176705--41176751	25	1.9	25	86	4	69	46	8	14	29	1.74
41189916--41190023	44	2.5	43	80	7	128	20	26	21	31	1.98
41190162--41190404	45	5.5	44	73	11	192	20	25	25	29	1.99
41190157--41190447	89	3.3	88	85	6	381	19	24	27	29	1.98
41190634--41190671	16	2.5	15	87	8	58	36	5	18	39	1.73
41198430--41198454	12	2.1	12	100	0	50	48	24	0	28	1.52
41199559--41199586	13	2.2	13	100	0	56	21	42	7	28	1.79
41201103--41201138	10	3.6	10	100	0	72	16	19	33	30	1.94
41208129--41208216	39	2.3	39	93	0	149	35	12	19	32	1.89
41214304--41214338	18	1.9	18	88	0	52	65	0	0	34	0.93
41216477--41216516	18	2.2	18	86	0	53	30	2	2	65	1.19
41217515--41217562	21	2.2	22	85	3	62	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41222085--41222134	19	2.7	18	81	9	55	40	2	0	58	1.10
41222085--41222136	20	2.7	18	78	18	52	40	1	0	57	1.10
41222120--41222219	25	4.0	25	73	20	84	27	3	5	65	1.28
41226273--41226678	132	3.1	132	92	0	686	25	24	18	31	1.98
41226663--41227208	46	12.1	46	86	5	749	29	27	16	26	1.97
41226768--41226838	34	2.1	34	94	0	124	33	23	18	23	1.96
41228239--41228285	21	2.2	21	88	0	67	25	38	10	25	1.88
41228368--41228419	7	7.0	7	81	16	61	13	13	0	73	1.11
41228368--41228419	23	2.3	22	90	9	79	13	13	0	73	1.11
41228377--41228420	7	5.6	8	91	8	65	11	11	0	77	1.00
41229237--41229313	17	4.5	16	82	14	75	9	1	9	80	0.96
41229248--41229292	22	2.0	23	83	12	58	13	0	8	77	0.98
41229257--41229314	16	3.6	16	78	19	66	8	0	8	82	0.84
41229238--41229313	34	2.2	34	85	2	98	9	1	9	80	0.97
41231993--41232044	19	2.7	20	82	5	63	46	11	17	25	1.81
41234372--41234409	14	2.7	14	91	0	58	71	2	0	26	1.00
41244244--41244356	58	1.9	59	82	8	142	44	17	15	23	1.86
41247296--41247335	21	1.9	21	84	0	53	75	2	7	15	1.14
41248520--41248553	15	2.3	15	89	0	50	61	2	0	35	1.11
41254379--41254436	22	2.6	22	83	0	71	6	10	15	67	1.41
41256298--41256327	2	15.0	2	100	0	60	50	50	0	0	1.00
41259400--41259433	17	2.0	17	94	0	59	35	2	20	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41267940--41267970	15	2.0	15	93	6	53	12	0	6	80	0.89
41271780--41271818	16	2.4	16	91	0	60	25	0	28	46	1.53
41273752--41273886	61	2.2	60	87	6	184	35	20	11	32	1.88
41274045--41274169	60	2.1	59	80	5	135	36	10	20	32	1.86
41274067--41274193	60	2.1	60	86	0	173	36	8	18	37	1.81
41282930--41282987	22	2.6	22	84	7	73	43	17	3	36	1.66
41282943--41283040	19	4.8	19	83	9	115	39	16	7	36	1.76
41282977--41283039	21	3.1	21	88	9	103	39	14	7	38	1.75
41284708--41284744	13	2.8	13	95	0	65	45	45	0	8	1.32
41292320--41292361	3	14.0	3	100	0	84	0	33	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214