Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  17  of  214  ( 25680 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4676330--4676365
19
2.0
17
89
10
54
0
11
5
83
0.80
4680683--4680747
26
2.6
24
80
4
67
41
9
18
30
1.82
4680952--4680997
23
2.0
23
86
0
65
41
0
0
58
0.98
4680975--4681047
20
3.9
19
83
16
91
34
0
5
60
1.20
4681214--4681243
14
2.1
14
93
0
51
43
13
6
36
1.70
4687923--4687991
34
2.0
34
85
0
93
23
15
8
52
1.71
4692758--4692816
25
2.4
25
94
2
102
8
44
23
23
1.81
4693899--4693955
17
3.4
17
76
16
57
28
5
0
66
1.13
4694013--4694048
16
2.1
19
85
15
51
8
2
8
80
0.99
4696900--4696929
3
10.0
3
100
0
60
33
0
0
66
0.92
4718814--4718849
19
1.9
18
88
5
54
11
33
5
50
1.61
4736010--4736112
2
51.5
2
100
0
206
0
49
0
50
1.00
4744559--4744634
21
3.7
21
87
7
120
36
11
10
40
1.76
4744572--4744635
19
3.3
19
93
4
101
37
14
9
39
1.78
4746583--4746617
6
5.8
6
100
0
70
0
17
0
82
0.66
4750835--4751410
287
2.0
287
91
1
922
25
14
28
32
1.94
4755033--4755081
25
2.0
24
84
8
62
20
2
2
75
1.00
4755654--4755717
29
2.1
29
85
5
83
42
14
10
32
1.80
4756191--4756346
83
1.9
82
85
5
208
48
8
7
35
1.62
4756752--4756790
18
2.2
18
85
0
51
38
0
5
56
1.22
4756770--4756824
27
2.1
26
86
3
74
40
0
5
54
1.23
4762054--4762096
21
2.0
21
86
8
61
44
0
34
20
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4762132--4762168
9
4.1
9
92
0
65
29
10
13
45
1.77
4768896--4768941
21
2.2
21
84
7
58
17
28
17
36
1.92
4790864--4790906
21
2.0
23
86
9
63
30
18
11
39
1.86
4792242--4792326
28
3.2
26
75
17
84
20
8
3
68
1.31
4792274--4792322
22
2.2
23
78
7
57
22
6
2
69
1.21
4792881--4792914
18
1.9
18
88
5
52
8
8
2
79
1.03
4799975--4800004
2
15.0
2
92
0
51
46
0
0
53
1.00
4800451--4800492
15
2.6
17
77
14
52
38
0
2
59
1.10
4800614--4800674
32
1.9
32
83
12
81
49
1
4
44
1.33
4800633--4800674
20
2.1
20
86
0
57
47
0
7
45
1.30
4802244--4802276
15
2.2
15
100
0
66
45
0
21
33
1.52
4802754--4802787
15
2.2
16
89
5
52
41
2
11
44
1.56
4806533--4806603
26
2.8
26
76
2
81
36
21
22
19
1.95
4808787--4808828
20
2.1
20
86
0
57
47
0
7
45
1.30
4811728--4811789
21
3.0
21
70
13
56
46
19
20
12
1.83
4811732--4811886
42
3.7
41
80
6
168
43
17
20
18
1.88
4811812--4811883
21
3.4
21
69
7
65
41
18
20
19
1.90
4811854--4811923
21
3.4
21
78
7
63
42
15
17
24
1.88
4822005--4822055
26
1.9
26
88
4
75
62
3
0
33
1.13
4827404--4827438
3
11.7
3
93
0
61
62
0
2
34
1.10
4827404--4827443
12
3.4
12
93
3
64
62
0
5
32
1.17
4828984--4829033
22
2.3
22
86
6
66
34
28
0
38
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4829849--4829890
20
2.1
20
90
0
66
50
23
21
4
1.68
4831179--4831232
21
2.4
23
79
17
60
51
7
1
38
1.41
4832227--4832327
43
2.4
42
76
1
103
18
18
20
41
1.90
4837866--4837908
18
2.5
17
82
10
52
13
6
6
72
1.27
4838016--4838545
110
4.9
109
90
2
807
30
15
19
35
1.92
4838023--4838545
219
2.4
217
90
4
822
30
15
19
35
1.92
4841918--4841989
7
9.9
7
81
14
67
84
8
0
6
0.77
4841918--4841990
16
4.9
16
73
20
68
84
8
0
6
0.76
4841910--4841992
1
83.0
1
75
0
58
85
7
0
7
0.74
4842010--4842048
21
1.9
20
84
5
51
71
0
28
0
0.86
4844214--4844514
46
6.3
48
86
8
393
35
14
21
28
1.93
4844148--4844503
98
3.6
98
96
0
631
34
15
21
28
1.94
4844478--4844623
37
4.0
37
93
1
242
36
16
21
24
1.94
4846247--4846352
43
2.5
43
78
9
117
33
15
26
25
1.95
4847486--4848826
100
13.4
100
86
1
1570
32
24
20
22
1.98
4847486--4848826
50
26.9
50
69
6
770
32
24
20
22
1.98
4850511--4850580
27
2.6
27
78
19
74
22
5
5
65
1.36
4850569--4850611
18
2.5
17
85
10
61
13
4
6
74
1.19
4850719--4851248
110
4.9
109
90
3
798
30
15
19
34
1.93
4850719--4851248
219
2.4
219
89
3
802
30
15
19
34
1.93
4852551--4852826
137
2.0
138
90
0
437
45
6
7
40
1.57
4852802--4852954
75
2.0
77
88
3
229
30
13
7
48
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4863547--4863686
26
5.5
25
68
20
85
42
0
1
55
1.14
4863560--4863615
15
4.0
15
73
17
57
44
0
0
55
0.99
4863608--4863666
18
3.4
17
88
9
84
40
1
1
55
1.20
4863824--4863920
45
2.2
45
85
5
126
32
28
4
34
1.76
4863900--4863964
16
4.1
16
93
0
103
21
33
4
40
1.74
4865193--4865305
10
11.7
9
71
17
68
61
4
2
30
1.29
4865262--4865304
18
2.4
18
84
7
52
62
4
0
32
1.15
4865194--4865305
19
5.7
19
72
17
63
62
4
2
30
1.29
4875582--4875624
16
2.8
16
92
3
70
41
0
16
41
1.48
4875623--4875657
18
2.0
17
88
5
52
45
0
0
54
0.99
4875602--4875880
38
7.0
40
67
14
139
43
0
6
49
1.32
4875743--4875776
17
2.0
17
88
11
52
44
0
0
55
0.99
4875598--4875917
119
2.7
120
97
1
608
43
0
5
50
1.30
4876660--4876701
12
3.6
12
77
6
50
23
14
21
40
1.90
4876643--4876722
23
3.4
23
84
5
99
31
11
17
40
1.85
4883833--4883870
18
2.1
18
85
9
51
36
2
2
57
1.26
4889637--4889716
42
1.9
42
87
10
119
40
5
10
45
1.60
4894826--4894866
21
2.0
21
90
0
64
29
21
29
19
1.98
4902294--4902350
26
2.3
25
85
11
73
36
5
5
52
1.47
4903559--4903589
16
1.9
16
93
0
53
58
0
0
41
0.98
4903566--4903605
20
2.0
20
85
0
53
52
0
0
47
1.00
4904686--4904732
6
7.8
6
97
0
85
65
34
0
0
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4909725--4909756
7
4.9
7
85
14
50
0
9
0
90
0.45
4909726--4909756
12
2.5
12
94
5
53
0
9
0
90
0.46
4924545--4924569
10
2.5
10
100
0
50
32
0
0
68
0.90
4924673--4924702
14
2.1
15
93
6
53
16
0
6
76
0.99
4926493--4926540
24
2.0
25
83
4
62
68
6
6
18
1.32
4929206--4929249
20
2.2
20
88
12
63
31
0
2
65
1.05
4929206--4929248
18
2.3
19
88
8
61
30
0
2
67
1.03
4930427--4930473
19
2.4
19
82
3
58
40
4
14
40
1.66
4930520--4930557
20
1.9
20
88
0
58
34
5
13
47
1.65
4936723--4936812
18
5.0
18
87
0
135
36
15
20
27
1.93
4939072--4939131
26
2.3
26
81
18
72
28
0
3
68
1.05
4941507--4941556
25
2.0
25
92
7
84
48
16
18
18
1.82
4949034--4949092
29
2.0
30
83
3
75
30
5
11
52
1.59
4959557--4959652
40
2.4
39
79
6
104
26
27
25
21
2.00
4962036--4962250
100
2.2
100
94
1
378
37
2
8
51
1.47
4964639--4964926
126
2.3
126
86
2
400
29
20
15
34
1.94
4964965--4965392
98
4.4
97
89
5
609
40
17
1
40
1.60
4996203--4996245
16
2.8
16
92
3
70
41
0
16
41
1.48
4996244--4996278
18
2.0
17
88
5
52
45
0
0
54
0.99
4996364--4996398
18
2.0
17
88
5
52
45
0
0
54
0.99
4996223--4996658
120
3.6
120
99
0
845
44
0
5
49
1.32
4996484--4996518
18
2.0
17
88
5
52
45
0
0
54
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4996871--4996919
16
3.1
16
93
0
89
20
38
6
34
1.77
4997911--4997977
21
3.3
21
65
23
61
61
7
13
17
1.55
4997912--4997991
40
2.0
40
100
0
160
57
7
12
22
1.60
4997968--4998044
33
2.5
31
79
10
84
38
10
11
38
1.76
5000857--5001100
120
2.1
118
83
7
298
31
20
7
40
1.80
5004856--5004901
24
1.9
24
86
0
65
45
0
34
19
1.51
5005469--5005511
16
2.6
17
78
10
54
53
0
2
44
1.13
5005582--5005657
11
6.8
11
68
24
52
53
1
1
43
1.17
5005550--5005599
20
2.7
19
80
20
61
54
2
2
42
1.23
5005991--5006028
3
13.0
3
94
5
69
31
0
0
68
0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214