genome.fa.s25.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  147  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44018786--44018837	24	2.2	24	89	6	79	51	5	1	40	1.37
44023131--44023182	24	2.2	24	86	6	70	50	5	3	40	1.45
44025327--44025383	25	2.2	26	81	6	71	43	5	10	40	1.62
44027247--44027402	43	3.7	43	77	13	171	28	28	19	24	1.98
44027242--44027402	84	1.9	84	82	9	204	29	27	18	24	1.98
44028555--44028583	14	2.0	15	93	6	51	51	20	0	27	1.47
44036863--44036901	18	2.2	17	86	13	53	33	0	20	46	1.51
44037020--44037048	8	3.6	8	100	0	58	24	13	27	34	1.93
44037135--44037207	23	3.2	23	88	7	121	23	20	24	31	1.98
44038778--44038818	19	2.0	20	86	9	57	53	0	4	41	1.22
44038863--44038916	26	2.0	27	82	3	65	53	1	9	35	1.44
44039059--44039090	3	10.7	3	100	0	64	68	0	0	31	0.90
44042019--44042075	14	3.9	14	75	15	53	31	8	1	57	1.39
44044934--44044973	20	2.0	20	85	9	55	57	2	12	27	1.48
44045276--44045304	5	5.8	5	100	0	58	82	0	17	0	0.66
44046459--44047022	167	3.4	164	81	10	631	22	12	20	44	1.84
44049291--44049345	18	2.9	18	81	13	58	40	0	0	60	0.97
44049306--44049361	22	2.7	20	86	10	69	48	0	0	51	1.00
44049336--44049369	14	2.3	15	90	5	52	52	0	0	47	1.00
44054411--44054453	21	2.0	21	91	8	70	53	11	11	23	1.69
44055916--44055965	26	1.9	26	84	8	66	4	14	10	72	1.26
44067459--44067507	24	2.0	25	84	11	66	16	12	2	69	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44084798--44084823	6	4.3	6	100	0	52	15	0	46	38	1.46
44084947--44085263	95	3.4	93	81	6	376	41	2	17	38	1.64
44085300--44085723	126	3.4	126	90	1	663	33	20	20	25	1.97
44089279--44089321	18	2.4	18	88	0	59	44	11	25	18	1.84
44095863--44095906	23	1.9	23	95	0	79	18	25	47	9	1.77
44097737--44097800	20	3.2	20	67	20	62	23	31	7	37	1.83
44097736--44097831	39	2.5	39	100	0	192	23	32	7	36	1.83
44101189--44101279	40	2.2	41	90	1	139	27	20	23	28	1.99
44103703--44103736	12	2.8	12	86	0	50	29	5	5	58	1.45
44106280--44106618	72	4.7	72	82	4	371	24	15	23	35	1.94
44106280--44106618	142	2.4	144	82	4	407	24	15	23	35	1.94
44114991--44115027	9	4.1	9	92	0	65	29	10	13	45	1.77
44119600--44119627	12	2.3	12	100	0	56	57	21	0	21	1.41
44119612--44119726	51	2.3	51	95	3	205	46	19	7	26	1.77
44119672--44119782	33	3.4	34	81	10	106	42	17	9	31	1.80
44122807--44123189	120	3.2	120	98	0	730	43	2	5	48	1.38
44123018--44123052	18	2.0	17	88	5	52	45	0	0	54	0.99
44123138--44123172	18	2.0	17	88	5	52	45	0	0	54	0.99
44123337--44123427	45	2.0	45	85	2	121	37	28	6	27	1.82
44123408--44123476	16	4.2	16	92	3	120	36	37	1	24	1.65
44123408--44123476	33	2.1	32	94	2	120	36	37	1	24	1.65
44124424--44124456	17	2.0	16	94	5	57	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44131473--44131535	30	2.1	30	93	0	108	28	3	11	57	1.49
44132657--44132730	30	2.5	28	74	8	76	41	6	6	44	1.57
44133901--44133943	15	2.8	16	77	22	56	62	0	0	37	0.95
44136802--44136872	24	3.0	24	85	0	88	46	0	33	19	1.50
44151834--44151858	3	8.3	3	100	0	50	36	0	32	32	1.58
44155298--44155361	31	2.1	31	82	5	76	45	14	7	32	1.73
44162180--44162246	34	1.9	35	87	3	100	44	14	8	31	1.76
44165681--44165734	27	2.0	27	96	0	99	42	25	16	14	1.87
44166912--44166936	13	1.9	13	100	0	50	32	12	8	48	1.69
44167036--44167284	50	4.8	50	86	5	302	25	22	30	21	1.99
44167036--44167285	100	2.4	104	86	5	337	25	22	30	21	1.99
44179820--44179855	13	2.8	13	91	0	63	36	38	8	16	1.79
44180703--44180727	10	2.5	10	100	0	50	20	0	8	72	1.10
44184910--44185062	35	4.3	35	90	7	238	18	12	28	40	1.87
44186786--44186851	28	2.4	28	81	0	78	36	19	16	27	1.93
44188958--44188986	3	9.7	3	100	0	58	34	0	0	65	0.93
44189499--44189807	109	2.9	109	92	2	491	30	16	19	34	1.93
44193845--44193888	21	2.1	21	86	0	61	79	2	4	13	0.98
44194794--44194852	6	9.7	6	72	17	50	71	0	16	11	1.15
44194809--44194855	7	7.0	7	85	9	71	70	0	17	12	1.17
44194793--44194849	13	4.6	13	82	12	75	70	0	17	12	1.17
44194793--44194855	20	3.0	20	86	11	74	69	0	17	12	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44196094--44196730	44	14.6	45	70	12	286	29	21	22	26	1.99
44196139--44196517	175	2.2	175	89	1	600	29	20	23	26	1.99
44196189--44196735	87	6.3	84	71	11	252	29	21	22	25	1.99
44196225--44196730	213	2.3	217	83	5	614	30	21	22	26	1.99
44196444--44196695	126	2.0	126	81	7	298	29	22	23	25	1.99
44196487--44196814	170	1.9	170	90	3	518	29	20	23	26	1.99
44197517--44197541	9	2.8	9	100	0	50	0	8	0	92	0.40
44198119--44198167	15	3.1	17	80	16	61	44	0	0	55	0.99
44198675--44198983	109	2.9	109	91	2	491	30	16	18	33	1.93
44206432--44206464	14	2.4	14	94	0	57	39	6	27	27	1.80
44207482--44207525	20	2.2	20	88	4	63	56	0	0	43	0.99
44214568--44214605	19	2.0	19	100	0	76	31	15	26	26	1.96
44224384--44224434	3	16.7	3	76	11	50	39	0	1	58	1.09
44224377--44224411	15	2.3	15	90	9	54	34	0	5	60	1.21
44236458--44236996	44	12.8	42	69	15	294	27	22	23	27	1.99
44236505--44236996	83	5.8	83	69	15	305	27	21	23	27	1.99
44236455--44236997	127	4.3	127	96	0	1014	27	22	23	26	1.99
44238302--44238352	3	16.7	3	76	11	50	39	0	1	58	1.09
44238295--44238329	15	2.3	15	90	9	54	34	0	5	60	1.21
44238500--44238543	9	5.4	8	84	13	54	31	0	2	65	1.05
44244324--44244354	5	6.2	5	100	0	62	22	0	19	58	1.40
44246263--44246290	7	4.0	7	100	0	56	42	0	28	28	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44250465--44250575	57	2.0	56	89	1	168	27	20	17	35	1.95
44251467--44251590	39	3.1	39	78	8	151	33	2	0	64	1.07
44252498--44252539	20	2.1	20	82	8	50	69	2	2	26	1.13
44253968--44254013	20	2.2	21	84	7	58	19	2	10	67	1.31
44254664--44254707	20	2.1	21	91	4	72	18	2	43	36	1.63
44255242--44255339	23	4.5	23	81	10	116	43	3	1	52	1.23
44255267--44255341	21	3.7	19	84	10	62	45	2	1	50	1.24
44255971--44256012	6	7.0	6	97	0	75	80	16	2	0	0.81
44256925--44257048	35	3.5	35	86	2	169	19	10	29	41	1.84
44259369--44259424	22	2.6	22	88	2	78	16	30	39	14	1.88
44261065--44261116	10	5.2	10	78	13	54	63	0	1	34	1.06
44261220--44261282	20	3.2	20	77	4	65	42	0	1	55	1.09
44261938--44262061	37	3.3	39	80	6	139	40	30	12	16	1.85
44268161--44268213	27	2.0	27	82	14	65	28	3	3	64	1.28
44271882--44271964	30	2.8	29	80	7	85	28	50	14	6	1.66
44271911--44272008	6	16.3	6	78	0	88	27	54	13	5	1.60
44271996--44272046	24	2.1	24	81	0	57	23	60	3	11	1.47
44272048--44272116	24	2.9	23	80	4	66	20	49	13	17	1.79
44272169--44272212	12	3.7	12	78	0	52	18	59	9	13	1.60
44272182--44272263	15	5.5	15	70	11	60	23	58	4	13	1.54
44272182--44272275	30	3.1	29	73	8	91	23	58	4	13	1.53
44272104--44272359	36	7.1	36	68	5	113	24	57	4	14	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44272212--44272277	18	3.7	18	70	0	51	24	57	3	15	1.52
44272172--44272404	60	3.8	60	71	11	166	24	57	3	14	1.54
44272254--44272310	24	2.2	25	84	9	71	24	59	0	15	1.36
44272206--44272347	30	4.7	30	72	5	81	24	57	2	15	1.49
44272319--44272557	42	5.1	42	64	23	95	27	58	4	10	1.49
44272350--44272497	24	6.2	25	72	11	69	26	58	5	9	1.51
44272326--44272599	54	5.5	53	65	21	171	27	58	4	9	1.49
44272176--44272620	96	4.7	96	81	4	454	25	57	4	12	1.53
44272380--44272500	18	6.4	18	71	17	84	26	59	4	9	1.48
44272362--44272449	24	3.9	24	70	19	73	27	60	4	7	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214