genome.fa.s25.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  142  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42757947--42758071	44	2.8	44	83	4	119	28	16	25	29	1.97
42758563--42758905	45	7.8	44	70	16	146	30	18	24	27	1.98
42758420--42758810	217	1.8	217	90	0	629	30	17	23	28	1.97
42758446--42758953	217	2.3	217	82	3	549	31	18	22	27	1.97
42759450--42759503	19	2.8	19	100	0	108	37	11	16	35	1.84
42759450--42759526	19	3.7	22	89	6	85	36	9	16	37	1.81
42759705--42759749	23	2.0	23	81	0	54	22	0	17	60	1.37
42759979--42760016	13	3.0	13	92	3	60	23	0	0	76	0.79
42762157--42762202	19	2.4	19	96	0	83	34	2	17	45	1.61
42763220--42763266	25	1.9	24	82	4	58	40	2	10	46	1.50
42763664--42763838	42	4.2	42	88	0	253	31	19	21	27	1.97
42771856--42772000	42	3.5	42	89	0	218	33	19	18	28	1.96
42787389--42787441	25	2.2	25	82	3	72	60	1	0	37	1.08
42787525--42787597	28	2.5	30	82	10	89	52	9	1	36	1.43
42788403--42788458	24	2.3	26	81	12	73	58	3	1	35	1.26
42791206--42791246	21	1.9	22	90	5	66	58	0	0	41	0.98
42799992--42800085	26	3.8	24	82	13	102	30	17	26	25	1.97
42799992--42800085	49	1.9	49	82	8	120	30	17	26	25	1.97
42807894--42807950	21	2.7	21	79	20	73	64	5	1	28	1.25
42808873--42808932	19	3.2	18	72	21	52	63	1	5	30	1.25
42816944--42816987	15	2.9	15	79	0	52	25	18	15	40	1.90
42816927--42817003	30	2.6	30	85	0	109	24	16	15	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42817575--42817619	18	2.6	17	83	10	65	28	2	0	68	1.01
42821675--42821710	15	2.5	14	86	8	54	44	8	0	47	1.33
42824501--42824553	18	3.1	18	81	15	67	35	0	0	64	0.94
42827903--42828019	45	2.6	44	79	4	126	24	22	24	28	1.99
42828186--42828409	89	2.5	89	76	2	218	28	24	19	27	1.98
42828269--42828403	45	3.0	46	72	6	132	27	24	20	27	1.99
42828247--42828412	89	1.9	89	85	0	233	25	25	22	27	2.00
42829997--42830062	1	66.0	1	72	0	51	1	1	10	86	0.71
42829999--42830060	7	8.9	7	83	13	83	1	1	11	85	0.74
42830000--42830059	6	9.8	6	82	13	61	1	1	11	85	0.76
42829999--42830061	23	3.0	21	80	20	69	1	1	11	85	0.73
42832754--42832807	24	2.2	25	80	3	65	42	5	22	29	1.76
42837519--42837595	24	3.2	25	70	10	70	50	1	0	48	1.09
42847916--42847945	15	2.0	15	100	0	60	20	6	26	46	1.75
42852677--42852723	19	2.5	19	100	0	94	14	44	19	21	1.86
42854588--42854649	30	2.0	31	96	3	117	30	6	9	53	1.59
42873798--42873853	26	2.2	26	80	6	60	64	1	0	33	1.04
42878008--42878049	15	2.8	15	79	13	50	59	0	11	28	1.33
42878526--42878592	34	1.9	35	84	3	91	34	8	10	46	1.70
42882003--42882158	44	3.5	44	81	1	161	27	23	20	28	1.99
42882212--42882930	44	16.0	45	71	7	284	30	19	14	34	1.92
42882266--42882440	94	1.9	93	83	3	226	28	18	16	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42882044--42882923	44	19.7	44	70	9	253	30	19	15	33	1.94
42882240--42882655	135	3.1	135	82	5	493	30	18	15	36	1.91
42882792--42883047	140	1.8	140	81	1	316	32	20	13	33	1.91
42896169--42896327	79	2.0	78	81	7	185	63	3	5	28	1.31
42899638--42899687	21	2.5	20	84	12	68	0	32	2	66	1.03
42899661--42899715	21	2.5	22	79	8	58	0	36	1	61	1.06
42925034--42925060	10	2.7	10	100	0	54	92	0	7	0	0.38
42926035--42926144	44	2.5	44	89	0	157	33	18	18	30	1.94
42926039--42926156	44	2.7	44	87	0	146	32	16	22	29	1.95
42927161--42927224	19	3.6	18	77	10	69	75	3	0	21	0.95
42927314--42927345	11	2.8	12	90	9	50	0	50	0	50	1.00
42927811--42927878	3	22.3	3	73	8	57	30	0	7	61	1.23
42927818--42927889	23	3.1	23	82	11	67	31	1	11	55	1.43
42928216--42928257	13	3.2	14	83	12	54	42	4	0	52	1.22
42928228--42928287	17	3.5	17	76	15	52	40	6	1	51	1.38
42928281--42928340	20	3.0	18	76	21	57	35	5	1	58	1.30
42928699--42928793	38	2.5	37	78	13	97	36	12	1	49	1.48
42930300--42930359	27	2.2	27	84	0	75	50	3	8	38	1.49
42931492--42931585	21	4.7	20	75	16	79	54	1	2	42	1.19
42931512--42931536	12	2.1	12	100	0	50	52	0	0	48	1.00
42931491--42931635	40	3.6	39	76	11	132	55	1	2	40	1.23
42931502--42931653	10	15.0	10	70	19	93	55	1	1	40	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42931491--42931614	59	2.1	59	82	10	146	54	1	2	41	1.23
42931478--42931646	19	8.4	19	73	14	108	56	1	2	39	1.22
42931674--42931811	20	6.7	19	72	17	98	36	4	2	56	1.34
42931668--42931841	10	17.0	10	68	9	84	37	4	2	56	1.31
42931725--42931860	20	6.7	20	75	16	84	36	5	0	57	1.28
42931784--42931860	30	2.6	29	81	4	82	36	7	0	55	1.29
42931789--42931841	18	2.8	18	85	8	61	35	5	0	58	1.22
42938280--42938347	26	2.5	26	80	4	64	66	10	10	13	1.46
42939699--42939734	16	2.2	16	100	0	72	50	5	5	38	1.49
42939890--42939921	3	10.7	3	93	0	55	68	3	0	28	1.04
42940625--42940650	13	2.0	13	100	0	52	84	0	15	0	0.62
42946922--42946975	26	2.1	26	89	6	83	46	0	5	48	1.25
42949499--42949638	46	3.0	46	89	2	201	30	25	7	37	1.84
42950864--42950911	17	2.9	17	87	3	71	50	20	2	27	1.60
42951067--42951373	44	6.7	44	71	19	200	22	18	27	30	1.98
42951057--42951221	87	1.9	87	96	2	305	21	18	27	32	1.97
42951032--42951373	190	1.8	190	100	0	684	23	18	26	31	1.97
42957822--42958092	43	6.3	43	84	1	276	31	26	16	25	1.97
42959083--42959151	34	2.0	34	100	0	138	50	20	11	17	1.76
42959298--42959382	40	2.1	40	84	4	109	49	14	5	30	1.66
42959448--42959727	86	3.2	86	87	3	384	42	17	8	31	1.79
42963352--42963478	14	8.9	14	69	17	57	43	30	0	25	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42963425--42963483	21	2.8	21	78	0	64	47	28	0	23	1.52
42963529--42963577	7	6.9	7	82	13	55	51	30	0	18	1.47
42963615--42963661	7	6.6	7	80	4	58	53	27	0	19	1.45
42963679--42963712	14	2.4	14	90	0	50	44	29	0	26	1.55
42964031--42964261	41	5.8	41	80	4	222	31	24	18	25	1.98
42969689--42969745	6	9.5	6	76	0	51	24	22	24	28	2.00
42969701--42969735	18	1.9	18	94	0	61	20	25	31	22	1.98
42969686--42969751	30	2.2	30	86	0	87	24	24	25	25	2.00
42969737--42969771	6	5.8	6	96	0	61	34	28	17	20	1.95
42976065--42976105	21	2.0	21	81	18	50	31	19	26	21	1.97
42982775--42982810	18	2.0	18	88	0	54	25	8	19	47	1.77
42984800--42984862	21	3.0	21	97	2	117	34	28	26	9	1.88
42985079--42985112	16	2.1	16	94	0	59	38	11	11	38	1.79
42986721--42986754	4	8.0	4	90	9	50	23	0	2	73	0.97
42986704--42986763	22	2.7	22	73	19	61	26	0	6	66	1.16
42990548--42990581	4	8.0	4	90	9	50	23	0	2	73	0.97
42990531--42990590	22	2.7	22	73	19	61	26	0	6	66	1.16
42996095--42996167	34	2.1	34	97	0	137	43	24	10	20	1.84
43001330--43001371	9	4.4	10	82	8	52	28	0	4	66	1.12
43009594--43009707	58	1.9	59	87	5	169	42	16	14	26	1.87
43010760--43010806	6	7.8	6	100	0	94	51	17	14	17	1.77
43014105--43014133	13	2.2	13	100	0	58	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43016665--43016770	41	2.6	41	90	1	169	25	18	23	32	1.97
43019810--43019876	34	1.9	35	87	3	100	44	14	8	31	1.76
43020247--43020284	15	2.5	15	83	12	51	47	0	0	52	1.00
43026814--43026862	15	3.0	15	80	16	53	81	0	2	16	0.78
43026814--43026862	8	6.0	8	79	11	55	81	0	2	16	0.78
43040126--43040299	69	2.5	69	84	5	201	32	14	21	32	1.93
43040317--43041362	74	13.8	74	82	8	1095	29	17	21	32	1.96
43040759--43041453	83	8.8	80	75	14	545	27	17	21	33	1.96
43040684--43041133	158	2.9	158	95	1	778	29	17	21	32	1.96
43040684--43041802	158	6.8	159	76	15	746	27	17	20	33	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214