genome.fa.s25.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  121  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36733339--36733403	17	3.7	17	74	13	60	10	4	4	80	1.01
36733419--36733478	27	2.2	27	90	3	93	43	0	5	51	1.23
36733761--36733830	19	3.8	18	75	16	56	61	0	1	37	1.05
36734331--36734376	19	2.6	18	78	18	51	76	4	6	13	1.14
36734334--36734406	18	4.2	17	78	13	62	76	4	6	12	1.12
36734433--36734490	26	2.3	25	91	5	98	79	1	8	10	1.01
36734455--36734500	17	2.9	16	78	9	58	80	4	8	6	1.01
36736565--36736611	23	2.0	23	84	8	60	42	6	17	34	1.74
36741638--36741662	12	2.1	12	100	0	50	0	8	0	92	0.40
36743243--36743479	118	2.0	118	93	0	402	27	12	27	32	1.93
36745672--36746132	166	2.7	168	86	4	631	39	12	16	32	1.85
36749816--36749894	10	8.7	9	73	14	56	30	5	0	64	1.15
36751975--36752019	17	2.6	18	82	10	58	53	4	0	42	1.21
36755217--36755278	24	2.6	24	89	0	88	38	6	24	30	1.80
36756401--36756432	12	2.7	12	100	0	64	6	18	6	68	1.32
36757318--36757365	19	2.6	18	80	9	60	27	2	6	64	1.28
36757967--36758008	15	3.1	14	83	16	61	80	0	19	0	0.70
36761098--36761266	45	3.7	45	77	11	164	23	28	20	27	1.99
36764009--36764256	40	6.2	40	92	0	415	24	28	23	23	2.00
36765533--36765682	37	4.1	37	93	0	246	27	30	18	23	1.98
36765887--36766071	47	3.9	47	89	0	280	27	28	11	33	1.91
36765980--36766055	22	3.3	22	69	16	64	26	27	11	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36769173--36769230	30	1.9	30	92	0	98	25	25	13	34	1.93
36772537--36772976	222	2.0	222	93	0	756	35	15	10	38	1.81
36775416--36775494	37	2.1	37	88	4	115	25	18	30	25	1.98
36777362--36777460	43	2.3	43	94	0	180	21	15	34	29	1.94
36777419--36777512	28	3.4	28	70	16	97	24	13	32	28	1.94
36777405--36777514	54	2.0	54	98	0	211	22	15	33	28	1.95
36777500--36777573	29	2.6	29	89	4	105	25	16	32	25	1.96
36777889--36778120	40	5.8	40	81	3	211	24	22	28	24	1.99
36781291--36781403	47	2.4	47	95	0	208	31	7	29	31	1.84
36781522--36781600	37	2.1	37	86	4	106	25	18	29	26	1.98
36783295--36783324	15	2.0	15	100	0	60	13	13	26	46	1.80
36783637--36783681	15	2.9	16	81	15	51	46	0	0	53	1.00
36796634--36796778	40	3.6	40	85	4	184	23	25	24	26	2.00
36799781--36799835	27	2.0	27	96	0	101	18	36	18	27	1.94
36803469--36803511	16	2.7	16	85	0	59	51	18	20	9	1.74
36803730--36803815	29	3.0	29	92	0	145	30	16	29	24	1.96
36803730--36803840	29	3.9	28	88	5	118	28	15	30	25	1.96
36808332--36808576	40	6.2	40	83	4	307	22	21	27	28	1.99
36808320--36808576	80	3.2	80	91	2	394	22	21	27	27	1.99
36811052--36811711	143	4.6	138	92	2	840	32	8	29	29	1.86
36811053--36811711	47	13.8	47	90	3	1014	32	8	29	29	1.86
36811053--36811711	96	6.9	95	92	2	1013	32	8	29	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36811830--36811930	37	2.7	37	98	0	193	24	18	31	24	1.98
36819350--36819413	29	2.2	29	91	2	103	31	12	28	28	1.93
36819350--36819439	29	3.2	29	85	6	96	31	13	28	26	1.94
36822534--36822620	45	1.9	45	88	0	129	27	12	22	36	1.91
36834340--36834405	26	2.3	29	85	12	84	18	9	1	71	1.20
36842384--36843035	96	6.8	96	97	0	1191	28	29	8	33	1.86
36846629--36846706	29	2.7	28	84	11	104	25	14	30	29	1.94
36846659--36846984	173	1.9	173	92	1	546	29	13	24	31	1.94
36849842--36849990	47	3.3	47	70	14	166	28	26	15	29	1.96
36849845--36850034	90	2.1	90	100	0	380	29	27	14	28	1.95
36849892--36850033	43	3.2	43	70	14	144	30	28	14	26	1.95
36850068--36850176	57	1.9	58	86	1	157	28	29	19	22	1.98
36850388--36850726	40	8.5	40	88	0	507	24	27	22	25	2.00
36852191--36852842	96	6.8	96	96	0	1155	28	29	8	33	1.86
36854124--36854307	40	4.6	40	85	5	221	25	26	23	25	2.00
36864317--36864463	67	2.3	63	79	11	154	21	29	17	30	1.96
36865167--36865227	30	2.0	30	83	0	77	31	22	8	37	1.84
36870043--36870396	40	8.8	40	92	2	573	23	28	21	26	1.99
36870043--36870396	122	2.9	122	94	2	606	23	28	21	26	1.99
36870043--36870396	82	4.4	80	95	1	573	23	28	21	26	1.99
36874638--36874690	25	2.1	25	86	6	72	37	32	3	26	1.74
36877461--36877621	47	3.3	47	87	6	216	29	12	30	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36879209--36879286	29	2.7	28	84	11	104	25	15	30	28	1.96
36879239--36879565	173	1.9	174	93	0	566	30	14	24	31	1.94
36880984--36881263	47	5.8	47	87	5	380	31	12	30	25	1.93
36881237--36881327	46	2.0	46	84	0	119	32	9	31	25	1.89
36880984--36881312	141	2.3	140	84	7	387	31	12	30	24	1.93
36881471--36881579	37	2.9	37	91	0	164	23	19	29	27	1.98
36889697--36889727	16	1.9	16	93	0	53	35	22	0	41	1.54
36889694--36889733	20	2.0	20	85	0	53	37	22	0	40	1.54
36889919--36890173	55	4.8	53	80	6	225	21	24	17	36	1.95
36889966--36890166	108	1.8	110	87	4	300	22	24	18	34	1.96
36891395--36891444	21	2.4	21	93	0	91	14	28	38	20	1.91
36900538--36900583	16	2.9	15	81	9	56	45	26	2	26	1.65
36903955--36904125	46	3.7	46	79	7	168	28	19	29	22	1.98
36904807--36904918	27	4.2	26	80	7	116	16	23	24	35	1.95
36909793--36909977	79	2.3	81	83	7	227	24	22	27	25	2.00
36909794--36909977	40	4.6	40	82	9	207	24	22	27	25	2.00
36909846--36910010	79	2.1	79	83	6	201	26	20	27	26	1.99
36917465--36917649	40	4.7	40	88	5	243	24	21	27	26	1.99
36917465--36917649	79	2.3	82	84	7	247	24	21	27	26	1.99
36917518--36917682	79	2.1	79	85	6	219	26	20	27	26	1.99
36917465--36917682	119	1.8	119	81	7	273	25	21	27	26	1.99
36924390--36924615	40	5.7	40	91	4	323	24	21	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36924390--36924648	120	2.2	120	83	6	312	25	20	27	26	1.99
36930832--36930904	27	2.7	28	80	6	87	31	19	21	27	1.97
36933331--36933369	20	2.0	20	90	10	62	15	23	5	56	1.59
36933625--36933810	50	3.6	51	79	8	164	26	29	18	25	1.98
36936698--36936735	18	2.2	18	85	4	51	50	0	13	36	1.42
36942990--36943138	48	3.1	48	84	3	167	28	22	25	23	1.99
36943444--36943492	20	2.5	20	83	6	55	63	2	18	16	1.41
36946885--36946947	27	2.3	27	86	0	90	23	39	17	19	1.92
36946900--36947020	54	2.2	54	80	0	143	25	34	15	23	1.95
36946930--36947018	27	3.3	27	68	6	72	25	35	13	24	1.92
36949184--36949316	13	9.9	13	66	15	65	41	3	22	32	1.72
36949183--36949316	40	3.3	40	88	1	178	41	3	22	32	1.71
36954923--36955065	39	3.7	39	88	0	207	31	4	19	44	1.70
36961918--36961966	9	6.0	9	86	11	54	51	0	0	48	1.00
36962150--36962216	22	3.0	21	79	14	73	50	4	0	44	1.22
36962150--36962214	23	2.9	23	80	13	73	50	4	0	44	1.22
36967244--36967434	41	4.7	41	84	0	265	19	27	17	35	1.94
36967244--36967434	82	2.3	82	92	0	310	19	27	17	35	1.94
36974856--36975029	51	3.4	49	74	10	172	31	27	17	24	1.97
36979355--36979388	14	2.3	15	85	5	52	14	17	0	67	1.23
36987225--36987360	67	2.0	67	92	0	227	32	16	25	26	1.96
36989285--36989324	21	1.9	21	85	10	55	40	12	25	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36991070--36991164	45	2.1	45	84	3	120	34	22	14	28	1.93
36993471--36993527	25	2.2	26	90	3	89	29	14	8	47	1.74
36993471--36993527	26	2.2	25	87	9	80	29	14	8	47	1.74
37003184--37003253	25	2.8	24	74	8	68	37	12	15	34	1.86
37004314--37004407	41	2.3	41	87	5	129	42	22	3	31	1.69
37004375--37004485	35	3.1	35	78	10	123	43	21	2	32	1.67
37004380--37004476	17	5.4	17	71	18	70	43	21	2	32	1.64
37004333--37004499	39	4.3	39	79	10	148	43	20	3	31	1.69
37006637--37006674	17	2.3	17	86	4	51	50	7	18	23	1.73
37016838--37016969	28	4.8	28	83	1	167	33	25	13	28	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214