genome.fa.s25.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  148  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44272586--44272773	18	9.9	18	65	17	87	22	61	3	12	1.47
44272586--44272638	6	8.8	6	81	8	63	20	66	1	11	1.33
44272584--44273649	12	87.6	12	67	17	182	22	59	4	13	1.53
44272338--44272903	96	6.1	94	72	13	372	24	58	4	12	1.52
44272488--44273181	36	21.0	35	65	19	150	23	58	4	13	1.54
44272488--44273274	135	5.9	135	93	3	1325	23	58	4	13	1.54
44272721--44272773	6	8.8	6	81	8	63	20	66	1	11	1.33
44272104--44273274	525	2.2	519	83	7	1399	23	58	4	12	1.55
44272856--44273035	30	5.8	30	65	13	78	22	58	5	13	1.55
44273019--44273065	18	2.6	18	75	0	58	27	55	4	12	1.56
44272479--44273323	390	2.1	387	92	4	1388	23	58	4	13	1.54
44273111--44273163	18	2.9	18	83	5	72	20	66	1	11	1.33
44273111--44273163	6	8.8	6	81	8	63	20	66	1	11	1.33
44273114--44273637	60	8.8	60	73	10	335	21	60	3	14	1.50
44273154--44273200	18	2.6	18	79	0	58	27	59	4	8	1.45
44273138--44273432	159	1.9	159	87	0	437	24	58	4	12	1.51
44272479--44273418	390	2.4	387	86	6	1189	23	58	4	13	1.54
44273150--44273499	159	2.2	156	81	7	373	22	58	4	14	1.53
44273405--44273649	120	2.0	120	100	0	490	18	62	3	16	1.46
44273408--44273638	60	3.8	60	86	0	336	18	61	3	16	1.48
44275296--44275453	77	2.1	77	95	2	282	34	12	26	27	1.92
44275462--44275491	15	1.9	16	93	6	53	66	0	3	30	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44276209--44276273	31	2.1	31	88	0	94	43	13	10	32	1.79
44277075--44277119	21	2.1	21	95	0	81	24	17	33	24	1.96
44283142--44283188	18	2.6	18	93	0	76	44	8	14	31	1.76
44286424--44286511	16	5.5	17	70	22	50	62	1	2	34	1.15
44287984--44288130	44	3.4	45	81	5	142	31	21	17	29	1.96
44288019--44288178	44	3.6	44	85	0	185	30	21	20	28	1.98
44288185--44288533	132	2.6	132	88	0	502	25	23	19	30	1.98
44300586--44300620	16	2.2	16	89	0	52	45	20	14	20	1.85
44302028--44302062	11	3.3	11	88	8	54	62	0	2	34	1.10
44301981--44302062	13	6.7	12	78	13	69	63	0	2	34	1.08
44310205--44310368	50	3.3	50	89	1	240	28	20	26	25	1.99
44310213--44310358	75	1.9	75	86	5	206	27	19	27	25	1.99
44310205--44310368	25	6.6	24	75	13	129	28	20	26	25	1.99
44310205--44310370	75	2.2	75	80	12	205	27	20	26	25	1.99
44311464--44311499	13	2.8	13	91	8	56	38	8	5	47	1.57
44313152--44313197	21	2.2	21	88	3	67	21	0	2	76	0.90
44315541--44315651	59	1.9	58	83	5	143	50	1	11	36	1.50
44316134--44316174	21	2.0	21	95	0	73	29	12	4	53	1.58
44317391--44317417	4	6.8	4	100	0	54	77	0	0	22	0.76
44324208--44324469	107	2.6	101	77	9	269	26	22	15	34	1.94
44324363--44324454	33	2.7	33	77	9	87	27	20	14	38	1.91
44331704--44331730	8	3.4	8	100	0	54	51	11	0	37	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44337553--44337680	21	6.1	21	67	8	73	41	17	21	19	1.90
44337526--44337674	42	3.6	41	79	4	138	44	16	21	17	1.87
44338951--44338978	13	2.2	13	100	0	56	46	21	7	25	1.76
44339427--44339457	14	2.3	13	94	5	53	3	22	0	74	0.96
44341546--44341784	50	4.7	50	82	5	250	28	21	27	22	1.99
44341549--44341777	100	2.2	101	84	8	277	28	21	27	21	1.99
44347438--44347489	27	1.9	27	84	7	70	36	15	1	46	1.57
44348683--44348882	42	4.8	42	85	4	255	29	23	18	29	1.97
44355424--44355480	21	2.7	21	88	0	87	24	43	15	15	1.86
44357349--44357386	16	2.4	16	86	8	51	36	0	18	44	1.50
44362993--44363033	13	3.0	13	82	10	55	34	7	17	41	1.77
44363058--44363131	31	2.3	32	84	9	89	29	5	14	50	1.66
44363533--44363600	15	4.4	15	71	18	50	41	0	5	52	1.25
44366509--44366548	19	2.0	20	86	13	57	17	5	5	72	1.21
44370133--44370168	5	7.2	5	100	0	72	38	22	0	38	1.54
44372209--44372324	57	2.0	57	100	0	232	44	5	21	28	1.73
44375761--44375802	11	3.7	11	87	6	57	7	7	2	83	0.89
44375771--44375808	12	3.2	12	85	14	53	13	2	5	78	1.02
44375885--44375915	13	2.5	13	94	5	55	6	0	9	83	0.79
44377595--44377645	13	3.9	13	92	0	84	25	9	25	39	1.86
44377595--44377645	26	2.0	26	96	0	93	25	9	25	39	1.86
44378092--44378143	14	3.9	14	85	14	83	30	13	11	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44378087--44378149	25	2.5	25	94	2	108	31	12	11	44	1.78
44380190--44380274	41	2.1	41	95	0	152	47	14	29	9	1.75
44380349--44380395	23	2.0	23	91	0	76	53	19	27	0	1.45
44380822--44380937	59	1.9	59	82	8	144	41	2	1	54	1.24
44384455--44384496	20	2.0	20	86	4	57	64	0	4	30	1.14
44385925--44385994	15	4.5	15	67	10	50	40	1	7	51	1.38
44390899--44390947	21	2.3	21	82	10	55	63	4	6	26	1.36
44391117--44391185	25	2.7	26	79	6	68	63	4	4	27	1.32
44391144--44391207	21	2.8	23	88	11	89	64	1	4	29	1.23
44392804--44393108	129	2.4	127	88	1	457	23	19	20	35	1.96
44393134--44393507	50	7.6	49	72	6	270	23	23	22	29	1.99
44393116--44393507	100	4.0	100	85	3	515	23	23	23	29	1.99
44393147--44393507	198	1.8	197	88	0	551	23	23	22	29	1.99
44393562--44394023	45	10.3	45	85	6	580	30	24	16	29	1.96
44393562--44394023	90	5.1	90	92	2	730	30	24	16	29	1.96
44394185--44394225	16	2.7	15	85	7	64	31	2	21	43	1.66
44394946--44394980	5	7.0	5	93	0	61	2	20	0	77	0.90
44398887--44398935	21	2.3	21	82	10	55	63	4	6	26	1.36
44399098--44399166	25	2.7	26	79	6	68	63	4	4	27	1.32
44399132--44399182	21	2.4	21	87	6	68	62	1	5	29	1.29
44399125--44399182	25	2.5	25	89	10	88	62	1	5	31	1.27
44401023--44401072	24	2.2	23	85	7	66	44	0	6	50	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44402158--44402220	32	1.9	34	83	6	85	52	4	3	39	1.38
44402419--44402471	26	2.0	26	85	7	72	39	16	5	37	1.73
44402791--44403106	137	2.3	137	93	1	524	28	10	9	52	1.65
44403104--44403130	13	2.1	13	100	0	54	40	0	0	59	0.98
44404722--44405479	381	2.0	377	92	1	1275	21	20	28	28	1.98
44406436--44406473	19	2.1	18	90	9	60	23	0	2	73	0.95
44406437--44406509	18	3.9	19	75	19	64	24	2	5	67	1.26
44407473--44407544	27	2.6	28	89	6	112	43	9	0	47	1.36
44407617--44407684	27	2.5	27	90	0	109	27	29	26	16	1.97
44407727--44407856	4	32.0	4	75	18	94	70	0	28	0	0.92
44407727--44407863	14	10.1	14	74	18	96	70	0	29	0	0.93
44407727--44407863	18	7.6	17	74	19	93	70	0	29	0	0.93
44407772--44407863	43	2.0	49	78	16	99	70	0	29	0	0.87
44407750--44407883	44	3.1	43	85	7	166	71	0	28	0	0.86
44407731--44407889	18	8.7	18	70	21	84	69	0	29	0	0.93
44407774--44407919	44	3.6	40	75	12	129	70	0	29	0	0.87
44407840--44407912	25	2.9	26	77	16	75	67	0	32	0	0.91
44407750--44407917	82	2.0	83	86	10	238	70	0	29	0	0.87
44407972--44408026	28	2.0	26	83	13	67	29	3	5	61	1.35
44408706--44409490	320	2.5	320	93	0	1313	50	7	11	30	1.67
44414994--44415293	106	2.8	105	81	4	370	28	19	21	30	1.97
44417419--44417457	20	2.0	21	85	10	55	66	10	0	23	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44417596--44417696	27	3.7	25	85	5	94	18	29	26	24	1.98
44417752--44417822	27	2.6	28	91	4	119	49	0	8	42	1.33
44418429--44418454	3	8.7	3	100	0	52	34	0	0	65	0.93
44419365--44419431	29	2.3	29	86	0	98	31	20	19	28	1.97
44423220--44423273	11	5.0	10	76	14	54	22	29	0	48	1.51
44423223--44423281	11	5.4	11	75	13	50	22	32	0	45	1.52
44424458--44424489	7	4.6	7	96	0	55	28	9	15	46	1.77
44424982--44425039	30	1.9	30	85	0	80	32	41	12	13	1.82
44425907--44427020	372	3.0	373	92	1	1849	27	24	20	27	1.99
44429444--44429736	125	2.3	126	87	3	414	26	18	19	35	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214