Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  16  of  214  ( 25680 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4402943--4403045
42
2.5
42
85
0
134
15
23
17
43
1.87
4422854--4422897
16
2.6
16
89
10
61
34
0
0
65
0.93
4422854--4422925
19
3.9
18
78
12
74
30
1
0
68
0.99
4422854--4422906
17
2.9
18
83
8
72
32
0
0
67
0.91
4422854--4422924
37
2.0
35
83
5
88
30
1
0
67
0.99
4422854--4422925
18
4.0
18
77
12
60
30
1
0
68
0.99
4424178--4424251
36
2.1
36
100
0
148
27
17
18
36
1.94
4425844--4426429
31
19.1
30
72
9
351
29
7
17
44
1.76
4425854--4426429
92
6.3
92
87
3
714
30
7
17
44
1.76
4425853--4426382
61
8.7
61
71
12
293
30
7
17
44
1.77
4426204--4426415
30
6.9
30
72
9
124
33
8
14
44
1.74
4430453--4430484
16
2.0
16
93
0
55
25
15
0
59
1.36
4430702--4430898
51
3.9
51
75
7
195
31
27
16
24
1.96
4430702--4430889
102
1.9
102
87
5
274
31
27
16
23
1.96
4437718--4437807
38
2.4
37
81
1
108
35
1
1
62
1.10
4444759--4444796
17
2.2
17
90
0
58
76
2
7
13
1.11
4446292--4446322
13
2.5
13
94
5
55
29
0
12
58
1.35
4447468--4447629
50
3.3
49
78
6
148
29
22
25
22
1.99
4447500--4447629
49
2.6
50
79
6
140
31
20
23
23
1.98
4460765--4460836
34
2.1
34
86
0
99
43
8
15
33
1.76
4461475--4461536
30
2.1
30
100
0
124
20
6
12
59
1.55
4469518--4469563
15
2.9
15
81
18
58
36
0
4
58
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4471358--4471391
15
2.3
15
89
0
50
41
11
29
17
1.85
4480451--4480494
22
2.0
23
86
4
63
59
6
6
27
1.49
4480698--4480760
16
4.0
15
83
6
72
42
3
23
30
1.70
4480694--4480760
32
2.1
32
88
5
100
43
2
23
29
1.69
4485910--4485944
18
2.0
17
88
5
52
54
0
0
45
0.99
4485936--4485965
15
1.9
16
93
6
53
50
6
0
43
1.28
4486056--4486085
15
1.9
16
93
6
53
50
6
0
43
1.28
4485890--4486759
120
7.2
120
96
0
1573
50
4
1
43
1.32
4486131--4486184
15
3.4
16
80
19
53
53
0
0
46
1.00
4486150--4486184
18
2.0
17
88
5
52
54
0
0
45
0.99
4486176--4486205
15
1.9
16
93
6
53
50
6
0
43
1.28
4486296--4486325
15
1.9
16
93
6
53
50
6
0
43
1.28
4486416--4486445
15
1.9
16
93
6
53
50
6
0
43
1.28
4486510--4486544
18
2.0
17
88
5
52
54
0
0
45
0.99
4486536--4486565
15
1.9
16
93
6
53
50
6
0
43
1.28
4486612--4486664
16
3.4
17
73
21
53
56
0
0
43
0.99
4486656--4486685
15
1.9
16
93
6
53
50
6
0
43
1.28
4487382--4487431
26
1.9
26
88
8
75
44
0
0
56
0.99
4494662--4494702
22
1.9
21
90
5
64
21
0
24
53
1.46
4496316--4496371
28
2.0
28
96
0
103
21
23
28
26
1.99
4500117--4500156
8
5.0
8
93
0
62
30
12
32
25
1.92
4508882--4508920
21
1.9
19
85
10
51
48
5
0
46
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4509573--4509641
17
4.1
16
76
14
59
44
1
0
53
1.09
4514130--4514174
23
1.9
23
86
4
63
64
8
4
22
1.40
4516219--4516246
7
4.0
7
100
0
56
0
42
0
57
0.99
4524198--4524311
51
2.2
53
85
3
151
17
21
32
28
1.96
4528210--4528256
23
2.1
21
81
14
51
48
25
2
23
1.62
4530567--4530743
45
4.0
45
85
4
234
23
16
25
34
1.95
4533417--4533490
30
2.5
30
84
4
96
24
25
10
39
1.88
4533476--4533668
30
6.5
30
74
6
99
20
24
12
41
1.87
4533476--4533668
60
3.2
59
74
7
185
20
24
12
41
1.87
4542800--4542830
16
1.9
16
93
0
53
32
25
16
25
1.96
4549156--4549188
3
11.3
3
93
6
59
66
0
0
33
0.92
4558410--4558448
20
2.0
20
84
0
51
46
7
0
46
1.31
4563646--4563688
17
2.5
17
79
20
54
25
13
20
39
1.90
4563753--4563794
16
2.6
16
81
7
50
33
11
14
40
1.82
4565737--4565792
21
2.7
21
94
0
94
28
8
33
28
1.87
4566973--4567144
58
2.9
59
76
7
170
36
14
16
31
1.89
4567047--4567165
61
2.0
60
80
8
134
36
16
17
29
1.92
4567694--4567883
97
2.0
97
94
0
335
40
8
17
34
1.80
4569528--4569581
25
2.2
25
86
6
74
12
9
9
68
1.39
4592629--4592653
10
2.5
10
100
0
50
44
0
0
56
0.99
4600901--4600958
19
3.1
18
75
9
53
15
6
3
74
1.17
4600894--4600979
38
2.2
38
78
14
95
16
4
4
74
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4600957--4600989
13
2.4
14
90
5
50
18
0
6
75
1.00
4600957--4600999
19
2.3
19
84
4
52
20
0
4
74
1.00
4601120--4601195
14
5.5
14
73
14
59
43
1
1
53
1.17
4601041--4601162
36
3.6
34
83
8
124
40
1
1
56
1.19
4601156--4601318
34
4.8
34
73
16
119
49
1
1
47
1.23
4601295--4601324
13
2.3
13
100
0
60
46
0
0
53
1.00
4601291--4601328
20
1.9
20
88
0
58
44
0
0
55
0.99
4601400--4601467
26
2.7
24
79
18
84
57
4
1
36
1.28
4601600--4601663
20
3.2
20
66
16
51
54
3
6
35
1.41
4602099--4602153
20
2.7
20
82
2
74
34
1
0
63
1.05
4602155--4602212
18
3.0
20
75
12
57
39
5
1
53
1.33
4602498--4602541
20
2.2
20
88
8
63
63
0
0
36
0.95
4602492--4602538
10
5.1
9
78
12
51
61
0
0
38
0.96
4602494--4602538
19
2.4
18
80
16
56
62
0
0
37
0.96
4602491--4602552
29
2.2
28
83
11
81
61
0
0
38
0.96
4602561--4602647
22
3.7
23
79
11
79
51
2
0
45
1.13
4602593--4602656
22
3.0
22
84
6
69
56
1
0
42
1.09
4602619--4602659
11
3.8
11
78
15
50
63
2
0
34
1.08
4602610--4602676
32
2.1
33
88
8
102
59
1
1
37
1.16
4602720--4602764
9
5.0
9
84
10
56
73
4
0
22
1.01
4602787--4602838
19
2.7
19
80
11
61
75
1
9
13
1.14
4602822--4602851
16
1.9
15
93
6
51
83
0
3
13
0.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4603864--4603918
7
7.4
7
78
11
56
67
10
18
3
1.35
4604533--4604566
17
1.9
17
88
5
50
32
32
29
5
1.81
4604971--4605026
27
2.2
26
87
6
78
28
37
10
23
1.88
4608182--4608300
41
2.9
41
82
2
141
29
26
17
26
1.98
4609940--4609965
13
2.0
13
100
0
52
46
23
0
30
1.53
4617334--4617387
26
2.1
26
85
0
72
35
12
25
25
1.92
4617589--4617649
20
3.2
20
93
4
99
26
1
0
72
0.94
4617589--4617650
10
6.5
10
76
9
67
27
1
0
70
0.96
4617669--4617734
20
3.3
20
81
6
73
37
0
3
59
1.13
4624435--4624556
54
2.3
54
76
11
124
24
27
28
19
1.99
4630824--4631028
100
2.0
100
98
0
392
28
20
17
34
1.95
4650684--4650737
24
2.2
24
83
6
65
29
3
29
37
1.75
4661371--4661404
16
2.1
17
88
5
52
67
0
2
29
1.05
4661380--4661430
18
2.9
18
75
11
52
66
0
7
25
1.18
4661984--4662025
9
4.7
9
87
0
57
35
28
14
21
1.92
4662925--4662969
14
3.1
14
78
12
54
51
8
4
35
1.54
4663059--4663112
25
2.1
25
86
6
72
50
0
9
40
1.35
4663185--4663239
24
2.4
22
82
11
58
54
7
5
32
1.51
4663281--4663310
3
10.0
3
100
0
60
66
0
0
33
0.92
4664647--4664700
18
2.9
18
83
2
63
14
1
42
40
1.57
4665030--4665136
28
4.0
25
67
20
58
35
1
1
60
1.18
4665040--4665167
51
2.6
49
79
12
127
36
3
0
59
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4665094--4665157
32
2.1
30
82
11
76
35
3
0
60
1.12
4665120--4665166
20
2.3
21
79
17
55
34
4
0
61
1.15
4666473--4666503
6
5.2
6
96
0
53
54
0
12
32
1.38
4667180--4667242
20
3.3
18
76
10
54
47
9
1
41
1.45
4667180--4667228
20
2.5
19
77
9
55
51
10
0
38
1.36
4667248--4667295
22
2.2
22
81
7
53
47
10
6
35
1.63
4667166--4667645
145
3.3
144
86
6
621
44
9
4
41
1.57
4668912--4668939
13
2.2
13
100
0
56
71
0
14
14
1.15
4669476--4669515
20
2.0
20
85
5
53
42
0
10
47
1.37
4670063--4670125
24
2.6
25
75
10
67
25
22
14
38
1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214