genome.fa.s25.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  156  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46330065--46330124	25	2.4	25	85	2	84	25	26	1	46	1.62
46332628--46332753	64	2.0	64	93	0	216	28	4	25	41	1.75
46333069--46333109	18	2.3	19	87	8	59	12	24	43	19	1.85
46336894--46336950	30	1.9	30	100	0	114	35	10	19	35	1.86
46339184--46339215	7	4.6	7	100	0	64	28	28	0	43	1.55
46343086--46343181	43	2.2	44	81	1	104	31	26	16	26	1.97
46345500--46345574	26	2.9	26	80	2	80	21	25	18	34	1.96
46364070--46364115	21	2.1	21	88	8	65	34	4	2	58	1.30
46373315--46373355	21	2.0	21	100	0	82	34	0	9	56	1.32
46373467--46373624	38	4.5	37	66	25	108	44	1	5	48	1.32
46373404--46373623	102	2.2	102	93	1	370	42	1	5	50	1.34
46373506--46373797	120	2.4	120	91	1	480	44	1	3	51	1.25
46373333--46373743	222	1.9	222	95	1	752	43	1	4	50	1.32
46373727--46373761	18	2.0	17	88	5	52	45	0	0	54	0.99
46373916--46374010	44	2.1	45	86	5	131	32	28	6	32	1.82
46377145--46377175	12	2.7	11	95	5	53	35	0	0	64	0.94
46388773--46388808	18	2.0	18	100	0	72	44	11	16	27	1.82
46391214--46391291	37	2.1	38	85	2	104	26	16	25	30	1.97
46391035--46392025	126	7.7	126	89	3	1505	28	15	25	30	1.96
46391038--46392025	259	3.8	258	92	1	1637	28	15	25	30	1.96
46391035--46392040	385	2.6	386	90	3	1560	28	15	25	30	1.96
46391858--46391935	37	2.1	38	83	7	97	26	15	24	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46391037--46392156	385	2.9	386	86	4	1492	29	15	25	30	1.95
46391901--46392212	89	3.5	89	86	1	421	31	13	23	32	1.93
46392142--46392308	90	1.9	90	81	3	203	33	16	21	28	1.95
46392142--46392330	89	2.1	90	80	2	202	32	16	22	28	1.96
46391037--46392332	44	29.9	44	71	10	414	29	15	24	30	1.96
46400475--46400502	14	2.0	14	100	0	56	14	21	0	64	1.29
46401610--46401699	3	30.3	3	82	2	92	0	36	0	63	0.95
46403208--46403256	13	3.7	13	77	2	53	57	2	2	38	1.22
46406326--46406465	40	3.4	40	80	10	131	16	25	22	35	1.95
46407498--46407557	27	2.2	28	82	8	72	46	5	6	41	1.52
46407985--46408248	116	2.3	116	80	5	282	28	16	19	35	1.94
46409693--46409731	21	1.9	20	94	5	69	28	23	15	33	1.95
46410219--46410274	29	2.0	28	96	3	103	42	3	17	35	1.67
46410227--46410274	14	3.4	14	72	16	53	39	2	20	37	1.65
46412645--46412709	21	3.1	21	84	8	87	38	18	40	3	1.66
46413131--46413400	43	6.3	42	84	6	323	25	24	20	29	1.99
46413131--46413400	85	3.2	85	86	4	341	25	24	20	29	1.99
46413131--46413400	128	2.1	128	81	8	327	25	24	20	29	1.99
46414081--46414135	25	2.2	26	83	3	67	34	3	1	60	1.25
46419102--46419130	13	2.2	13	100	0	58	24	24	13	37	1.91
46427804--46427850	14	3.1	15	81	6	51	61	0	6	31	1.21
46428023--46428074	3	16.7	3	80	7	59	61	1	5	30	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46428023--46428084	28	2.3	27	83	10	74	59	3	8	29	1.42
46428023--46428083	19	3.2	18	84	9	68	60	3	6	29	1.38
46428039--46428086	19	2.5	19	90	6	71	60	4	8	27	1.44
46445417--46445456	20	2.0	20	100	0	80	30	15	25	30	1.95
46449311--46449366	28	2.0	28	82	6	69	58	3	5	32	1.37
46449407--46449484	3	24.7	3	77	14	77	62	5	5	26	1.37
46449407--46449484	22	3.5	21	77	11	77	62	5	5	26	1.37
46455778--46455807	16	1.9	15	93	6	51	70	13	3	13	1.30
46455839--46455868	15	2.0	15	93	0	51	66	10	0	23	1.21
46457529--46458016	44	11.2	43	67	13	194	28	25	17	28	1.98
46457419--46458016	131	4.6	131	88	0	883	27	25	18	28	1.98
46470121--46470167	4	12.0	4	86	4	69	72	4	0	23	1.02
46471004--46471041	12	3.3	12	85	14	62	81	5	7	5	0.98
46471004--46471049	22	2.2	20	92	7	74	82	4	8	4	0.93
46471004--46471049	21	2.1	21	96	4	83	82	4	8	4	0.93
46473827--46473862	18	1.9	18	88	5	54	58	2	0	38	1.13
46474841--46474892	17	3.0	17	91	5	86	46	11	13	28	1.78
46475646--46475715	7	10.0	7	78	15	65	0	18	0	81	0.69
46475637--46475715	28	3.1	27	78	17	105	0	18	0	81	0.70
46475638--46475722	23	3.7	23	79	16	97	0	21	0	78	0.74
46475645--46475740	31	3.3	29	80	12	92	0	22	1	76	0.86
46476230--46476304	29	2.6	29	82	2	87	41	5	21	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46476664--46477475	75	10.7	75	84	6	951	33	20	17	28	1.96
46476664--46477478	228	3.6	229	87	2	1119	33	20	17	28	1.95
46489592--46489636	20	2.4	19	88	7	65	0	24	0	75	0.80
46490101--46490148	21	2.2	21	82	10	53	6	10	12	70	1.32
46490518--46490592	29	2.6	29	82	6	89	38	8	20	33	1.81
46507855--46507948	21	4.5	21	70	15	61	22	18	15	43	1.87
46507889--46507994	42	2.5	43	84	4	135	16	20	17	44	1.87
46507889--46508007	42	2.8	43	80	8	129	16	19	19	44	1.87
46515671--46515764	44	2.2	43	90	5	145	31	21	8	38	1.83
46517996--46518043	24	2.0	24	84	8	62	68	12	2	16	1.29
46519627--46519683	26	2.2	26	100	0	114	14	19	7	59	1.57
46523598--46523641	19	2.3	20	84	7	56	27	20	11	40	1.86
46527757--46527886	42	3.0	43	65	20	117	26	23	23	27	2.00
46527750--46527930	86	2.1	87	92	1	301	27	22	23	27	1.99
46527763--46527899	44	3.2	42	67	15	109	24	22	23	29	1.99
46527889--46529493	134	12.0	134	98	0	3048	27	20	22	29	1.98
46527955--46529721	46	39.4	46	64	13	364	27	19	22	29	1.98
46529395--46529588	95	2.0	95	97	0	370	30	19	21	28	1.97
46529261--46529722	229	2.0	229	97	0	879	28	19	22	29	1.98
46529490--46529732	134	1.8	134	98	0	468	28	19	21	29	1.98
46529836--46530003	40	4.1	40	78	8	124	31	20	20	27	1.97
46529858--46530007	40	3.8	40	82	7	187	30	22	20	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46529857--46530008	80	1.9	80	90	0	241	30	22	20	26	1.98
46530697--46530753	26	2.2	26	100	0	114	14	19	7	59	1.57
46540830--46540898	24	2.7	26	77	11	79	50	7	0	42	1.30
46542550--46542593	6	7.2	6	81	2	52	0	56	0	43	0.99
46542550--46542593	18	2.4	18	92	3	70	0	56	0	43	0.99
46542653--46542702	25	2.0	25	92	0	82	4	32	4	60	1.34
46542889--46542914	11	2.4	11	100	0	52	23	0	15	61	1.33
46546279--46546317	20	2.0	20	94	0	69	48	0	2	48	1.15
46546406--46546445	20	2.0	20	90	0	62	50	12	10	27	1.72
46546394--46546460	34	1.9	35	90	3	109	46	13	8	31	1.74
46546429--46546468	14	2.9	14	84	0	53	42	17	7	32	1.77
46546486--46546609	28	4.4	28	90	0	185	30	12	25	31	1.92
46546784--46546808	2	12.5	2	100	0	50	52	0	0	48	1.00
46547354--46547977	23	26.6	23	70	11	390	26	14	16	42	1.87
46547339--46547979	70	9.1	69	86	5	838	26	14	16	42	1.86
46549142--46549200	18	3.3	18	80	4	57	44	8	1	45	1.44
46549160--46549200	18	2.3	19	83	12	59	43	9	0	46	1.36
46550469--46550568	35	2.8	35	82	8	105	7	9	8	76	1.17
46550494--46550552	26	2.4	25	86	8	84	3	11	6	77	1.07
46551466--46551522	25	2.3	25	81	0	60	40	14	5	40	1.68
46551761--46551852	23	3.9	22	84	12	112	30	21	26	21	1.99
46552836--46552902	30	2.2	30	97	0	125	32	19	10	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46558829--46558885	25	2.3	25	81	0	60	40	14	5	40	1.68
46559123--46559213	23	3.9	22	77	15	85	31	20	24	23	1.98
46559152--46559213	22	2.7	23	82	9	74	33	22	22	20	1.97
46566405--46566788	210	1.8	210	95	0	705	33	18	13	34	1.90
46569815--46569870	22	2.5	23	82	2	69	51	1	1	44	1.22
46569846--46569885	16	2.5	16	91	0	62	47	2	7	42	1.45
46569896--46570065	59	2.9	59	96	0	304	40	6	8	44	1.61
46570575--46570625	24	2.1	24	100	0	102	35	3	29	31	1.76
46589094--46589144	24	2.2	22	83	16	59	52	11	13	21	1.72
46595289--46595343	28	2.0	28	85	0	74	29	0	0	70	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214