genome.fa.s25.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  167  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49312880--49313054	84	2.1	84	92	2	289	17	14	30	37	1.90
49314085--49314221	28	4.9	28	72	15	113	13	1	43	40	1.53
49314157--49314207	21	2.4	21	86	0	75	5	0	45	49	1.26
49314126--49314204	7	11.1	7	80	1	68	10	0	49	40	1.37
49315072--49315128	23	2.4	24	85	2	71	29	45	1	22	1.63
49315601--49315640	12	3.3	12	83	13	55	22	7	12	57	1.60
49315601--49315646	24	1.9	24	86	0	65	28	8	10	52	1.66
49315906--49315943	18	2.1	18	100	0	76	18	10	15	55	1.68
49316808--49316905	24	4.2	23	63	27	55	40	3	7	48	1.46
49316739--49317526	69	11.3	69	95	0	1326	41	5	5	47	1.50
49316783--49317507	21	31.4	21	62	26	97	41	4	5	47	1.49
49317017--49317114	24	4.2	23	63	27	55	40	3	7	48	1.46
49316739--49317526	209	3.8	209	96	0	1393	41	5	5	47	1.50
49317636--49317672	19	1.9	19	100	0	74	48	16	2	32	1.60
49317619--49317709	47	1.9	47	97	0	173	49	14	1	35	1.51
49317801--49317854	16	3.3	16	89	2	81	50	16	0	33	1.46
49317922--49317998	9	9.3	9	72	18	69	42	19	2	35	1.65
49317922--49317977	25	2.2	25	90	0	85	42	19	1	35	1.62
49317950--49317996	15	3.0	16	87	6	78	46	19	2	31	1.61
49323591--49323636	19	2.5	18	86	6	65	26	13	0	60	1.32
49323819--49324196	43	8.8	42	73	9	226	25	17	27	29	1.98
49323819--49324177	86	4.2	86	74	11	270	24	17	28	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49324714--49324743	15	1.9	16	93	6	53	36	0	0	63	0.95
49328253--49328328	9	8.4	9	84	5	91	27	7	19	44	1.78
49330198--49330278	39	2.1	39	95	0	144	19	8	19	51	1.72
49336342--49336461	25	4.9	25	73	7	84	21	23	20	34	1.97
49338393--49338557	83	2.0	82	92	1	276	38	15	20	26	1.92
49340196--49340261	34	1.9	34	87	6	98	33	9	10	46	1.70
49340349--49340392	18	2.4	18	81	7	54	38	0	0	61	0.96
49340496--49340560	34	1.9	34	93	6	114	41	4	10	43	1.60
49341199--49341251	21	2.7	19	69	11	52	41	22	9	26	1.84
49342813--49342859	24	1.9	25	83	12	62	14	4	4	76	1.09
49347393--49347432	20	2.0	20	95	0	71	30	22	15	32	1.94
49355446--49355681	45	5.3	45	76	7	185	30	19	22	27	1.98
49355529--49355704	44	4.0	45	78	5	153	31	18	23	27	1.97
49355473--49355706	89	2.6	88	79	4	220	31	19	23	26	1.98
49355438--49355791	133	2.7	133	78	2	397	30	17	23	28	1.97
49355934--49356018	44	1.9	45	85	2	118	29	14	25	30	1.95
49356914--49356972	24	2.5	23	72	22	59	13	5	3	77	1.05
49359943--49359971	7	4.1	7	100	0	58	58	13	13	13	1.63
49364497--49364528	15	2.0	17	88	11	50	40	6	0	53	1.26
49377278--49377307	7	4.1	7	95	4	51	53	0	0	46	1.00
49386907--49386951	19	2.4	19	96	0	81	28	17	17	35	1.93
49388453--49388506	22	2.5	22	81	0	72	57	0	3	38	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49388465--49388503	2	19.5	2	83	0	51	48	0	5	46	1.24
49388545--49388603	25	2.3	25	85	5	73	38	3	18	38	1.68
49388563--49388616	25	2.1	26	93	6	92	46	0	11	42	1.39
49388568--49388623	27	2.2	25	87	6	76	51	1	10	35	1.47
49388652--49388681	11	2.6	11	94	5	51	73	0	0	26	0.84
49390213--49390435	44	5.0	43	68	17	125	28	20	19	31	1.97
49390590--49390745	81	1.9	81	86	2	224	28	17	20	33	1.96
49390566--49390848	41	6.8	41	68	18	138	27	20	21	30	1.98
49390471--49390868	210	1.9	210	87	3	586	26	19	20	32	1.97
49390478--49390889	44	9.7	44	69	14	236	27	20	20	31	1.97
49390671--49390917	129	1.9	129	90	3	390	25	21	22	31	1.98
49390924--49391516	50	11.9	50	73	4	457	24	20	22	32	1.98
49390976--49391516	99	5.5	99	89	0	803	24	20	22	32	1.98
49392843--49392880	17	2.3	16	91	8	67	5	0	7	86	0.69
49397120--49397177	25	2.3	26	88	8	84	48	1	8	41	1.44
49401743--49401823	35	2.3	34	83	8	101	49	2	9	38	1.49
49402224--49402267	23	1.9	23	85	0	61	70	9	2	18	1.24
49407276--49407407	66	2.0	66	94	1	230	48	15	6	28	1.71
49409263--49409298	8	4.8	8	86	13	58	52	0	0	47	1.00
49409351--49409398	18	2.7	19	75	12	57	47	4	6	41	1.48
49420111--49420214	29	3.5	29	65	14	77	38	18	12	30	1.88
49420100--49420232	60	2.2	58	78	12	153	31	16	11	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49424846--49424880	18	1.9	18	88	0	52	48	11	0	40	1.39
49426960--49427015	25	2.2	25	75	6	60	19	26	21	32	1.97
49427090--49427172	25	3.3	24	77	15	80	25	27	19	27	1.99
49427079--49427182	50	2.1	51	82	8	124	25	25	20	29	1.99
49428477--49428706	105	2.2	101	81	7	241	26	23	16	33	1.96
49434378--49434415	17	2.2	17	90	0	58	18	7	10	63	1.50
49440762--49440811	17	2.7	20	78	18	70	10	0	44	46	1.37
49445402--49445451	17	2.7	20	78	18	70	10	0	44	46	1.37
49449707--49449768	30	2.1	29	82	11	72	50	3	0	46	1.17
49449938--49449988	13	3.9	13	77	10	59	37	27	3	31	1.75
49451954--49451979	7	3.7	7	100	0	52	46	11	0	42	1.40
49455500--49455527	14	2.0	14	100	0	56	21	14	7	57	1.61
49457448--49457489	20	2.0	21	86	4	59	54	7	4	33	1.49
49465014--49465048	3	11.7	3	100	0	70	34	0	0	65	0.93
49465212--49465269	3	19.3	3	100	0	116	0	32	0	67	0.91
49470326--49470459	25	5.4	25	73	10	105	39	19	23	17	1.92
49473631--49473786	30	5.2	29	77	7	136	33	22	5	38	1.76
49473649--49473820	30	5.9	28	75	13	116	33	22	6	37	1.80
49474330--49474388	11	5.3	11	85	4	82	76	0	22	1	0.88
49474330--49474399	11	6.3	11	75	14	63	77	0	21	1	0.85
49474330--49474399	23	3.2	22	82	6	88	77	0	21	1	0.85
49474503--49474556	11	4.7	11	84	8	56	81	9	9	0	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49474521--49474559	14	2.9	14	88	11	64	76	10	12	0	1.01
49474501--49474557	12	4.7	12	81	10	62	82	8	8	0	0.85
49475242--49475604	17	20.2	17	68	19	170	32	13	11	42	1.79
49475242--49475640	35	11.1	35	73	13	262	33	13	10	42	1.79
49475456--49475643	53	3.6	53	72	18	151	34	12	10	43	1.76
49475242--49475639	18	22.3	16	68	22	149	32	13	10	42	1.79
49482972--49483000	10	3.0	10	95	5	51	31	27	0	41	1.56
49486486--49486533	11	4.5	11	87	12	73	85	14	0	0	0.60
49486497--49486540	8	5.1	8	82	15	52	86	11	2	0	0.66
49486488--49486533	19	2.4	19	96	3	83	84	15	0	0	0.62
49487421--49489117	76	21.6	76	88	6	2030	27	15	19	36	1.93
49489315--49489451	30	4.6	31	83	7	142	32	24	4	38	1.75
49489333--49489468	30	4.6	28	79	12	98	33	22	5	38	1.76
49489813--49489852	19	2.0	20	90	9	64	60	25	10	5	1.49
49489843--49489882	21	2.0	21	90	5	64	70	12	15	2	1.28
49490016--49490111	11	8.5	11	79	15	99	76	0	22	1	0.86
49490016--49490113	21	4.6	22	78	14	84	76	0	22	1	0.85
49490016--49490113	41	2.3	45	82	10	116	76	0	22	1	0.85
49490016--49490107	34	2.7	34	93	5	150	76	0	22	1	0.86
49490209--49490263	13	4.4	13	76	13	53	83	5	9	1	0.86
49490900--49490946	21	2.3	21	85	10	62	57	6	8	27	1.53
49490952--49491313	17	20.2	17	67	19	143	32	13	11	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49490951--49491313	36	10.1	35	71	19	191	32	13	11	42	1.79
49491927--49492006	25	3.2	25	74	0	61	30	18	26	25	1.98
49492047--49492163	25	4.7	25	74	18	93	36	19	23	19	1.95
49492046--49492127	23	3.4	22	72	22	67	35	19	25	19	1.95
49492119--49492179	26	2.3	26	85	0	86	42	21	19	16	1.89
49494807--49494831	13	1.9	13	100	0	50	16	12	32	40	1.84
49502920--49503028	23	4.7	23	84	4	148	31	23	20	24	1.98
49502920--49503028	46	2.4	46	95	0	191	31	23	20	24	1.98
49506788--49506860	36	1.9	38	81	10	87	36	2	1	58	1.21
49506837--49506878	12	3.5	12	84	12	59	35	9	0	54	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214