genome.fa.s25.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  150  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44774407--44774492	44	2.0	44	88	4	129	30	19	24	25	1.98
44779616--44779705	21	4.2	21	71	10	67	35	38	0	25	1.56
44779653--44779699	15	3.3	15	82	8	62	40	31	0	27	1.57
44779896--44779941	7	6.4	7	85	5	65	36	47	0	15	1.45
44779897--44779944	22	2.2	22	100	0	96	37	50	0	12	1.41
44779911--44779973	21	3.0	20	80	13	56	38	44	0	17	1.49
44779964--44779990	14	1.9	14	100	0	54	37	37	0	25	1.57
44780358--44780521	41	4.0	40	84	1	175	32	29	17	20	1.96
44780382--44780551	41	4.2	40	78	6	144	32	31	17	19	1.95
44780594--44780680	40	2.2	40	87	8	124	27	19	14	37	1.91
44783121--44783168	25	2.0	24	83	4	60	41	10	10	37	1.74
44783380--44783450	37	2.0	35	83	10	90	54	2	2	39	1.29
44787573--44787637	34	1.9	33	84	9	87	29	7	6	56	1.51
44788022--44788060	19	2.0	19	85	5	51	48	12	5	33	1.63
44792218--44792350	51	2.6	50	79	2	149	29	23	28	18	1.98
44792614--44792662	20	2.5	20	81	15	66	57	6	24	12	1.58
44800563--44800599	16	2.3	17	86	9	51	24	8	13	54	1.66
44807301--44807338	14	2.5	15	87	12	60	60	0	39	0	0.97
44807298--44807344	14	3.1	15	79	14	53	63	0	36	0	0.94
44807298--44807344	17	2.8	17	75	12	51	63	0	36	0	0.94
44807505--44807689	22	9.0	20	71	20	107	30	1	12	54	1.48
44807498--44807689	41	4.7	38	72	21	113	31	1	13	53	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44807498--44807592	19	4.8	19	79	8	91	32	1	11	54	1.43
44807629--44807743	19	6.1	19	71	18	89	32	0	13	53	1.45
44807670--44807743	27	2.7	27	93	0	130	33	0	12	54	1.38
44807784--44807905	60	2.0	60	85	3	165	30	0	14	54	1.47
44808022--44808061	15	2.5	16	84	8	55	40	5	2	52	1.37
44809687--44809720	6	5.8	6	93	6	61	32	35	32	0	1.58
44824245--44824286	3	13.7	3	95	5	75	66	2	0	30	1.04
44825222--44825386	85	1.9	85	88	2	251	44	20	16	18	1.86
44832901--44832938	20	1.9	20	94	0	67	50	0	2	47	1.15
44833037--44833145	39	2.8	39	90	2	157	40	3	3	52	1.37
44833037--44833164	39	3.3	39	85	3	114	40	3	4	51	1.38
44846729--44846795	31	2.2	31	83	5	82	38	8	16	35	1.80
44848937--44848974	20	1.9	19	89	5	58	10	0	7	81	0.87
44860546--44860618	37	2.0	37	86	0	101	24	16	8	50	1.72
44863457--44863489	11	2.9	11	95	4	57	45	0	33	21	1.52
44866071--44866204	68	2.0	68	84	0	178	44	20	6	29	1.77
44866773--44866839	22	2.8	24	75	11	66	50	1	5	41	1.36
44874388--44874454	27	2.5	27	82	4	73	34	19	29	16	1.94
44878088--44878129	12	4.0	10	80	19	50	61	0	0	38	0.96
44881272--44881301	13	2.3	13	100	0	60	40	43	0	16	1.48
44881443--44881501	9	6.4	9	80	3	73	22	8	27	42	1.82
44881656--44881680	12	2.1	12	100	0	50	16	24	36	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44882761--44882801	14	2.9	15	78	7	50	43	7	7	41	1.60
44882770--44882836	34	1.9	35	90	3	109	37	8	7	46	1.64
44883345--44883375	13	2.4	13	100	0	62	29	0	12	58	1.35
44895489--44895836	52	6.9	52	84	9	452	34	14	22	29	1.93
44895442--44895836	150	2.7	144	90	7	637	34	14	21	29	1.93
44895442--44895847	98	4.1	98	87	6	547	34	14	22	29	1.93
44895811--44896030	37	6.0	37	95	1	381	37	16	21	24	1.93
44895442--44895884	150	3.0	139	76	15	394	35	14	21	28	1.93
44899706--44899749	22	2.0	21	83	12	54	50	11	15	22	1.76
44901303--44901369	29	2.3	29	75	10	66	50	4	2	41	1.37
44909526--44909595	26	2.7	26	74	22	67	60	2	2	34	1.26
44909643--44909680	11	3.5	11	86	13	60	50	10	0	39	1.37
44909635--44909692	22	2.7	22	75	15	68	37	13	3	44	1.61
44914849--44914931	3	28.7	3	71	20	61	62	0	6	31	1.19
44914849--44914906	20	2.9	21	82	12	68	65	0	5	29	1.14
44915986--44916028	20	2.2	20	83	8	52	6	4	46	41	1.51
44916319--44916560	44	5.7	41	75	7	214	26	21	23	28	1.99
44916324--44916574	129	1.9	129	94	0	439	25	21	23	29	1.99
44916319--44916591	44	6.3	43	73	11	175	26	21	22	29	1.99
44916571--44917886	100	13.1	99	87	1	1651	23	21	23	31	1.98
44922691--44922785	26	3.4	27	76	15	70	58	3	8	29	1.43
44922764--44922799	16	2.2	16	95	0	63	55	2	0	41	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44922923--44923002	3	27.7	3	70	20	55	62	0	6	31	1.20
44922925--44922965	17	2.4	17	88	8	57	65	0	4	29	1.13
44923855--44924263	205	2.0	204	97	0	764	20	17	30	31	1.95
44928407--44928439	17	1.9	17	100	0	66	42	9	0	48	1.35
44934477--44934590	31	3.7	32	76	10	98	59	0	3	36	1.14
44934477--44934599	11	11.9	11	69	21	63	59	0	3	37	1.14
44934480--44934546	9	7.0	9	76	15	55	61	0	1	37	1.05
44934483--44934610	41	3.2	40	82	8	145	62	0	3	34	1.11
44935850--44935948	38	2.7	37	80	13	114	59	2	0	38	1.09
44935882--44935939	17	3.2	17	72	18	55	58	1	0	39	1.08
44936674--44936704	7	4.4	7	95	0	53	32	54	0	12	1.38
44938001--44938034	17	2.0	17	88	0	50	17	82	0	0	0.67
44938759--44938797	19	1.9	19	90	10	60	66	2	7	23	1.30
44942211--44942252	21	1.9	22	85	9	59	66	0	0	33	0.92
44942360--44942418	30	2.0	30	89	0	91	27	3	10	59	1.46
44946862--44946966	42	2.5	42	83	6	124	40	20	26	11	1.87
44946766--44947107	165	2.1	165	97	0	639	41	19	26	12	1.87
44948664--44948731	34	2.0	34	100	0	136	41	2	29	26	1.70
44957333--44957399	25	2.7	25	83	4	73	28	16	20	34	1.95
44960390--44960465	38	2.0	37	82	14	93	38	22	7	31	1.83
44960653--44960792	41	3.4	41	89	5	196	20	29	18	32	1.96
44968587--44968727	41	3.5	41	80	8	155	22	27	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44981960--44982026	1	67.0	1	72	0	53	86	4	2	5	0.77
44981961--44982016	8	6.9	8	82	11	69	85	3	3	7	0.81
44981961--44982025	8	7.9	8	77	13	60	86	4	3	6	0.79
44983408--44983590	45	4.1	45	90	5	282	27	16	26	28	1.97
44983424--44983613	90	2.1	89	84	9	244	27	16	25	29	1.97
44983666--44984245	100	5.8	99	82	4	643	30	22	21	25	1.99
44983667--44984245	50	11.7	50	68	6	253	30	22	21	25	1.99
44983667--44984245	199	2.9	196	84	3	716	30	22	21	25	1.99
44984351--44984548	44	4.6	41	77	9	166	29	23	21	26	1.99
44984261--44984567	129	2.4	129	86	1	427	30	22	19	27	1.98
44988962--44989001	3	13.3	3	100	0	80	0	32	0	67	0.91
44989700--44989781	30	2.7	30	77	3	85	29	21	25	23	1.99
44989748--44989807	28	2.1	29	87	3	86	30	20	26	23	1.98
44989915--44990016	26	3.9	26	81	0	123	38	23	21	16	1.93
44990441--44990477	14	2.4	17	86	13	53	48	0	0	51	1.00
44990627--44990677	14	3.6	14	74	7	50	68	0	13	17	1.21
44991749--44991885	39	3.6	36	72	13	96	21	19	27	30	1.98
44992929--44993099	27	6.3	27	83	9	197	23	16	19	40	1.91
44992903--44993085	54	3.4	53	83	4	188	22	18	19	40	1.91
44992903--44993059	81	1.9	81	88	2	235	22	19	19	39	1.92
44992929--44993099	54	3.2	54	85	6	222	23	16	19	40	1.91
44993097--44993140	7	6.3	7	91	0	70	18	0	36	45	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44993246--44993857	27	22.7	27	81	4	574	22	16	18	41	1.90
45008683--45008750	9	7.3	9	69	18	50	57	1	1	39	1.17
45008683--45008729	17	2.6	17	84	15	60	63	2	0	34	1.06
45009160--45009338	98	1.8	98	90	0	286	37	9	15	37	1.80
45010651--45010728	29	2.7	29	80	9	97	33	21	10	34	1.87
45011844--45012001	43	3.7	42	88	2	226	26	30	19	23	1.98
45011844--45012021	86	2.1	85	89	3	268	27	30	18	23	1.97
45011844--45012021	43	4.2	42	85	3	212	27	30	18	23	1.97
45012026--45012068	13	2.9	14	83	16	52	55	4	0	39	1.20
45012295--45012327	12	2.6	13	85	4	50	72	3	0	24	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214