genome.fa.s25.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  173  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50817470--50817501	15	2.1	15	100	0	64	43	9	15	31	1.78
50818846--50818875	15	2.0	15	93	0	51	46	0	10	43	1.37
50821098--50821130	12	2.8	12	86	4	50	27	0	9	63	1.24
50823874--50823931	29	2.0	29	83	10	73	41	5	1	51	1.34
50827727--50827751	6	4.2	6	100	0	50	20	0	0	80	0.72
50830722--50830754	16	2.1	16	94	0	57	24	9	12	54	1.66
50840529--50840558	7	4.4	7	95	4	53	76	0	23	0	0.78
50850865--50850919	25	2.2	25	83	6	67	23	9	5	61	1.46
50852277--50852315	17	2.4	16	95	4	69	41	2	0	56	1.13
50857867--50858182	110	2.9	109	82	3	393	31	15	18	35	1.91
50861003--50861028	13	2.0	13	100	0	52	38	23	23	15	1.92
50862289--50862332	7	6.7	7	82	12	58	72	0	13	13	1.12
50862289--50862332	20	2.2	20	88	4	63	72	0	13	13	1.12
50862289--50862333	13	3.5	13	82	8	56	73	0	13	13	1.10
50863573--50864220	86	7.5	86	91	2	996	28	23	22	25	1.99
50864207--50864538	130	2.5	130	88	0	475	28	18	23	29	1.98
50866041--50866113	23	3.2	23	92	0	128	30	24	21	23	1.99
50866203--50866228	8	3.2	8	100	0	52	34	23	15	26	1.94
50867448--50867482	17	2.1	17	100	0	70	28	54	5	11	1.59
50869458--50869773	110	2.9	109	81	3	366	31	15	17	35	1.92
50885061--50885100	22	1.9	20	90	10	62	32	5	2	60	1.32
50895951--50896026	38	2.0	38	100	0	152	28	10	18	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50900835--50900877	15	2.9	14	80	10	50	60	0	6	32	1.23
50905163--50905205	18	2.5	17	82	14	52	37	2	0	60	1.10
50925447--50925859	140	2.9	138	83	5	465	32	19	19	28	1.96
50926166--50926197	8	4.0	8	100	0	64	50	0	0	50	1.00
50926162--50926240	16	4.8	16	71	18	65	45	0	2	51	1.14
50926181--50926249	32	2.2	32	82	7	88	46	0	4	49	1.21
50926451--50926536	41	2.1	42	95	2	156	67	0	3	29	1.07
50926494--50926519	11	2.4	11	100	0	52	53	0	7	38	1.30
50927419--50927500	11	7.9	11	69	17	50	35	0	13	51	1.41
50927418--50927465	15	3.1	14	76	21	51	35	0	12	52	1.40
50927452--50927515	29	2.2	28	86	10	85	40	0	15	43	1.47
50927550--50927672	37	3.1	40	74	10	119	26	14	21	37	1.92
50930439--50930632	96	2.0	96	88	2	291	33	17	13	36	1.88
50935295--50935486	42	4.5	42	87	3	233	42	17	23	16	1.89
50935289--50935486	85	2.3	85	86	0	272	42	17	23	16	1.88
50935281--50935488	21	9.9	21	66	3	103	42	17	23	16	1.88
50935712--50935798	46	1.9	46	88	2	131	45	8	1	44	1.40
50937555--50937639	31	2.6	32	76	14	86	56	7	0	36	1.27
50967008--50967095	44	2.0	42	87	8	124	50	4	7	37	1.52
50980381--50980419	18	2.2	18	85	0	51	46	0	0	53	1.00
50985794--50985843	21	2.3	21	82	3	64	20	10	6	64	1.45
50987160--50987185	11	2.4	11	100	0	52	92	7	0	0	0.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50994063--50994264	98	2.1	98	100	0	404	33	22	12	30	1.92
50998780--50998825	24	2.0	23	83	12	58	26	6	10	56	1.58
51002676--51002758	21	3.9	21	78	7	78	33	21	24	20	1.97
51002685--51002745	21	2.8	22	82	9	81	31	24	26	18	1.97
51004067--51004112	14	3.3	14	93	0	74	54	2	0	43	1.12
51008063--51008125	28	2.2	29	81	13	69	33	3	19	44	1.66
51008518--51008597	3	26.7	3	77	5	81	30	3	5	61	1.35
51009055--51009379	108	3.0	107	92	2	535	29	15	19	36	1.92
51009654--51009679	6	4.3	6	100	0	52	0	19	15	65	1.27
51015941--51015998	21	2.8	19	74	10	53	36	1	1	60	1.17
51016407--51016460	27	2.0	27	96	3	101	18	25	11	44	1.83
51025363--51025393	9	3.4	9	90	0	53	25	12	22	38	1.90
51025448--51025484	9	4.1	9	89	0	56	48	13	8	29	1.71
51025698--51025757	30	2.0	31	86	3	86	20	40	0	40	1.52
51025758--51025790	7	4.7	7	100	0	66	15	69	0	15	1.19
51036447--51036513	34	1.9	35	90	3	109	34	10	11	43	1.76
51037858--51037927	27	2.6	27	80	8	79	50	21	2	25	1.63
51046610--51046981	46	8.6	45	83	12	469	34	14	22	28	1.93
51046692--51046846	36	4.0	36	79	15	184	36	14	20	28	1.92
51046646--51046981	82	4.0	81	87	7	469	34	15	22	28	1.94
51046610--51046981	128	2.9	126	79	16	449	34	14	22	28	1.93
51057870--51057946	31	2.6	28	83	8	91	57	0	1	41	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51057910--51057975	10	6.6	10	71	13	55	59	0	0	40	0.98
51057863--51057941	39	2.0	39	80	9	90	53	0	1	45	1.08
51057911--51057967	21	2.8	21	83	2	62	57	0	0	42	0.98
51058997--51059030	16	2.1	16	88	0	50	70	0	0	29	0.87
51058985--51059049	31	2.1	32	86	13	91	63	3	0	33	1.10
51059095--51059120	6	4.3	6	100	0	52	0	50	15	34	1.45
51060358--51060401	21	2.1	21	84	16	56	50	6	38	4	1.50
51066415--51066498	31	2.7	32	83	10	113	44	7	0	48	1.30
51066415--51066505	29	3.0	29	77	6	92	43	7	1	47	1.39
51069830--51069903	38	1.9	38	97	0	139	21	20	13	44	1.85
51070046--51070094	16	3.1	16	78	0	53	26	2	20	51	1.59
51070374--51070469	48	2.0	48	89	0	147	13	22	14	48	1.79
51071157--51071252	48	2.0	48	89	0	147	13	22	14	48	1.79
51070329--51071893	776	2.0	777	97	0	2961	31	17	16	33	1.93
51071889--51071958	30	2.3	30	82	0	77	42	25	21	10	1.84
51080944--51081297	125	2.8	126	89	1	577	29	15	22	32	1.95
51084404--51084428	10	2.5	10	100	0	50	48	0	8	44	1.32
51084411--51084748	111	3.0	110	96	2	604	47	5	12	35	1.64
51084747--51085143	58	6.9	58	84	9	494	23	0	31	44	1.53
51084897--51084934	6	6.5	6	96	3	69	15	0	47	36	1.46
51085128--51085155	6	4.7	6	100	0	56	14	0	50	35	1.43
51085003--51085193	64	2.9	67	82	10	193	24	0	31	43	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51084948--51085193	93	2.6	95	85	11	344	23	0	31	44	1.57
51084747--51085143	29	13.9	29	80	13	412	23	0	31	44	1.53
51085242--51085290	25	1.9	25	87	4	71	38	16	4	40	1.67
51085689--51085723	18	1.9	18	88	0	52	31	8	34	25	1.86
51086375--51086399	7	3.6	7	100	0	50	60	12	0	28	1.32
51087358--51087389	16	1.9	16	93	6	55	68	6	0	25	1.12
51087482--51087530	10	4.8	10	77	5	53	67	0	0	32	0.91
51087482--51087546	31	2.1	31	97	0	121	64	0	0	35	0.94
51087488--51087529	21	2.0	21	85	0	57	64	0	0	35	0.94
51087860--51087921	29	2.2	28	82	2	70	48	14	9	27	1.75
51091895--51091996	52	2.0	52	90	0	159	30	11	23	34	1.91
51099207--51099246	20	2.0	20	90	0	62	50	12	10	27	1.72
51099195--51099261	34	1.9	35	87	3	100	46	11	8	32	1.72
51099336--51099387	22	2.2	24	83	6	63	51	5	1	40	1.37
51102670--51102698	14	2.1	14	100	0	58	41	27	17	13	1.87
51105920--51106153	116	2.0	117	93	0	398	38	15	10	35	1.83
51107479--51107512	16	2.1	16	88	0	50	50	14	17	17	1.79
51110312--51110352	21	2.0	21	90	0	64	29	21	29	19	1.98
51112258--51112291	16	2.1	16	88	0	50	50	14	17	17	1.79
51114627--51114664	17	2.2	17	81	9	51	50	0	0	50	1.00
51115065--51115134	9	7.8	9	93	0	104	38	27	10	24	1.87
51118819--51118870	15	3.6	15	80	12	56	44	0	1	53	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51118757--51118986	120	1.9	120	100	0	460	41	1	6	49	1.40
51118767--51118954	61	3.1	61	70	14	208	42	1	7	48	1.40
51118948--51118989	15	2.7	16	82	14	52	45	0	2	52	1.13
51118939--51118980	15	2.9	15	82	10	52	47	0	0	52	1.00
51119115--51119224	45	2.6	43	79	11	120	32	29	5	32	1.80
51119205--51119256	16	3.2	16	91	0	86	34	36	0	28	1.58
51119629--51119687	30	2.0	30	86	6	84	35	8	1	54	1.41
51119755--51119832	27	2.9	27	92	0	120	26	26	30	15	1.96
51120117--51120142	3	8.7	3	100	0	52	34	0	0	65	0.93
51120713--51120741	14	2.1	14	100	0	58	37	6	0	55	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214