genome.fa.s25.2.7.7.80.10.50.1000.189.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  189  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55468312--55468415	49	2.1	50	89	8	160	9	13	9	67	1.42
55468361--55468434	23	3.3	23	69	16	64	6	14	9	68	1.36
55468955--55469019	32	2.1	32	97	2	123	47	12	9	30	1.72
55472936--55472998	33	1.9	33	87	12	94	33	1	3	61	1.21
55474175--55474229	18	3.0	19	68	26	55	61	5	0	32	1.19
55474301--55474343	20	2.3	18	80	8	50	62	4	0	32	1.15
55474765--55474824	26	2.2	27	82	11	70	58	3	1	36	1.25
55475457--55475486	8	3.8	8	95	0	51	13	3	0	83	0.77
55477331--55477368	14	2.7	14	80	15	51	42	5	0	52	1.24
55482131--55482164	18	1.9	17	88	5	50	20	5	0	73	1.04
55514598--55514640	21	2.0	21	95	0	77	27	0	37	34	1.57
55514621--55514653	16	2.1	16	94	0	57	33	0	36	30	1.58
55514632--55514726	45	2.1	44	88	1	136	34	5	27	32	1.79
55514888--55514922	18	2.0	17	88	5	52	54	0	0	45	0.99
55514807--55515077	144	1.9	146	92	4	467	46	2	2	47	1.32
55515032--55515065	17	2.0	17	88	11	52	55	0	0	44	0.99
55519244--55519316	37	2.0	37	88	0	110	49	6	2	41	1.44
55519258--55519318	17	3.4	18	71	11	54	47	4	3	44	1.41
55519253--55519364	20	5.8	20	65	12	56	45	5	4	44	1.46
55519546--55519585	7	5.9	7	86	13	57	52	0	2	45	1.14
55522342--55522444	51	2.0	52	98	1	199	26	15	19	38	1.91
55530689--55530726	20	1.9	20	88	0	58	50	5	0	44	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55531375--55531436	30	2.2	27	85	8	79	50	4	0	45	1.23
55531415--55532238	264	3.2	257	81	7	926	46	7	7	38	1.61
55531785--55531829	5	9.0	5	87	0	63	40	2	2	55	1.24
55539523--55539552	5	6.2	5	92	7	53	20	0	0	80	0.72
55541509--55541555	21	2.3	20	88	3	67	23	4	29	42	1.73
55541509--55541540	7	4.6	7	92	0	55	28	3	28	40	1.71
55546108--55546154	21	2.3	20	92	3	76	23	4	29	42	1.73
55546944--55546993	15	3.3	15	82	0	55	24	6	2	68	1.23
55555636--55555670	18	2.0	17	88	5	52	45	0	0	54	0.99
55555780--55555814	18	2.0	17	88	5	52	45	0	0	54	0.99
55555980--55556067	45	2.0	45	86	2	124	29	29	5	35	1.80
55555961--55556067	45	2.5	43	80	8	123	28	28	5	36	1.80
55556049--55556081	16	2.1	16	94	0	57	30	36	0	33	1.58
55556062--55556104	21	2.0	21	95	0	77	34	37	0	27	1.57
55559761--55559797	18	2.1	18	94	0	65	64	21	8	5	1.40
55560654--55560679	11	2.4	11	100	0	52	7	38	7	46	1.61
55563834--55563875	15	2.7	16	82	14	52	45	0	2	52	1.13
55563825--55563866	15	2.9	15	82	10	52	47	0	0	52	1.00
55563978--55564012	18	2.0	17	88	5	52	45	0	0	54	0.99
55563809--55564125	157	2.0	157	95	0	562	47	4	2	44	1.38
55564248--55564283	16	2.2	16	100	0	72	38	36	0	25	1.56
55564752--55564805	27	2.0	27	85	7	74	29	1	0	68	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55566068--55566093	7	3.7	7	100	0	52	38	0	0	61	0.96
55572667--55572775	51	2.2	50	85	6	148	43	14	12	29	1.83
55574157--55574345	105	1.8	105	92	2	326	27	9	27	35	1.88
55579697--55579728	7	4.6	7	96	0	55	46	9	0	43	1.35
55580658--55580703	14	3.4	14	84	3	58	56	10	2	30	1.46
55582894--55583485	50	11.9	50	71	4	397	24	23	21	30	1.99
55582894--55583488	100	6.0	100	91	0	924	24	23	21	30	1.99
55588842--55588887	14	3.4	14	84	3	58	56	10	2	30	1.46
55599840--55599897	28	2.1	28	90	0	89	27	27	20	24	1.99
55601518--55601567	20	2.7	18	77	22	59	50	4	2	44	1.32
55601586--55601643	17	3.4	17	76	9	55	50	0	0	50	1.00
55605576--55605623	19	2.5	19	90	6	71	54	6	4	35	1.45
55608198--55608355	42	3.8	42	75	5	133	18	21	17	42	1.89
55611230--55611399	59	2.9	59	97	0	313	45	9	4	40	1.57
55611400--55611462	23	2.7	23	78	7	65	46	3	1	49	1.27
55612626--55612743	25	4.8	25	72	7	71	31	19	27	21	1.97
55612913--55612975	24	2.6	24	85	7	74	31	19	28	20	1.97
55621701--55621842	71	2.0	71	97	0	266	22	12	16	48	1.79
55626141--55626199	19	3.4	19	68	22	65	52	13	8	25	1.68
55626137--55626202	33	2.0	33	100	0	132	54	12	9	24	1.66
55628897--55628965	34	2.0	34	85	0	93	39	17	10	33	1.83
55640382--55640436	26	2.1	26	83	6	67	29	7	23	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55641866--55641899	12	2.8	12	91	8	52	73	5	0	20	1.04
55654173--55654210	18	2.0	20	85	10	53	31	5	2	60	1.33
55654624--55655065	79	5.6	79	83	6	404	41	9	12	36	1.76
55656760--55656804	22	2.0	22	100	0	90	40	31	8	20	1.83
55659092--55659729	78	8.2	79	83	8	684	38	14	9	37	1.79
55659105--55659727	161	4.0	157	85	8	735	38	14	9	37	1.78
55659539--55659673	70	2.0	69	88	4	202	40	13	8	37	1.76
55662768--55662814	22	2.2	22	85	11	62	55	0	4	40	1.19
55666796--55666848	21	2.5	21	81	0	61	35	33	1	28	1.68
55667637--55667678	20	2.0	21	86	13	61	54	19	2	23	1.55
55667766--55667831	32	2.1	32	91	5	107	37	7	6	48	1.56
55670203--55670390	36	4.9	36	83	12	232	29	19	14	36	1.91
55670272--55670426	46	3.6	46	78	16	168	29	20	13	36	1.91
55670157--55670390	118	2.0	115	89	2	351	29	19	14	36	1.92
55670236--55670426	82	2.3	82	92	0	310	29	20	13	36	1.90
55682816--55682875	9	6.6	9	75	9	50	33	1	6	58	1.34
55682811--55682911	19	5.3	18	71	12	69	30	0	9	58	1.37
55682811--55682896	28	3.1	27	75	9	75	31	1	9	58	1.37
55682864--55682939	22	3.7	20	75	14	66	32	0	7	59	1.26
55682920--55682974	27	2.0	28	82	13	69	30	1	1	65	1.13
55684992--55685083	19	4.8	19	91	0	157	35	15	10	38	1.82
55684969--55685083	38	2.9	38	88	5	158	38	14	9	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55687772--55687857	3	28.7	3	81	4	102	30	3	3	62	1.28
55688112--55688148	16	2.2	18	85	9	51	32	5	2	59	1.34
55696435--55696461	6	4.5	6	100	0	54	55	0	0	44	0.99
55697090--55697179	41	2.2	41	86	4	119	17	33	22	26	1.96
55698158--55698287	40	3.3	40	78	9	124	34	24	16	23	1.95
55704148--55704205	19	3.1	19	80	7	64	46	6	3	43	1.47
55714395--55714463	34	2.0	34	100	0	138	31	20	11	36	1.88
55716387--55716444	17	3.4	18	83	9	77	41	0	0	58	0.98
55719530--55719589	22	2.7	21	89	5	84	38	15	23	23	1.92
55720728--55720867	70	2.0	70	90	0	217	35	19	15	29	1.93
55721483--55721534	26	2.0	27	88	3	79	63	3	1	30	1.23
55722430--55722466	16	2.3	15	90	9	56	78	0	10	10	0.97
55722430--55722466	17	2.2	17	95	4	67	78	0	10	10	0.97
55722996--55723050	21	2.6	22	85	8	78	27	9	36	27	1.87
55723214--55723347	18	7.9	18	69	17	90	57	2	0	39	1.16
55723265--55723320	15	4.0	15	73	17	57	55	1	0	42	1.10
55723270--55723468	59	3.4	57	71	16	181	53	4	1	41	1.26
55723248--55723490	120	2.0	120	96	0	450	51	4	1	42	1.32
55723298--55723490	61	3.2	60	70	12	178	50	5	1	42	1.34
55726550--55726587	6	6.2	6	87	6	58	39	0	60	0	0.97
55726550--55726585	18	2.0	18	100	0	72	38	0	61	0	0.96
55726555--55726596	18	2.3	18	87	0	57	40	0	59	0	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55728246--55728270	13	1.9	13	100	0	50	40	48	0	12	1.40
55728251--55728325	38	1.9	39	89	2	116	52	25	2	20	1.60
55733915--55733961	11	4.3	11	86	7	60	25	27	0	46	1.53
55733915--55733958	10	4.1	10	83	11	52	25	29	0	45	1.54
55735764--55735806	18	2.4	18	88	0	59	20	25	6	46	1.76
55736229--55736347	49	2.4	49	94	0	202	45	3	7	43	1.49
55739444--55739730	124	2.3	125	91	0	459	29	19	18	32	1.96
55739911--55739951	21	2.0	21	90	0	64	48	34	0	17	1.47
55744912--55744943	3	10.7	3	100	0	64	0	31	0	68	0.90
55761624--55761662	15	2.5	16	88	12	55	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214