genome.fa.s25.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  169  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49732511--49732544	18	1.9	17	88	5	50	82	0	0	17	0.67
49737127--49737183	15	3.7	15	79	11	62	57	3	0	38	1.16
49737138--49737178	5	8.2	5	80	20	50	60	0	0	39	0.96
49737139--49737178	20	1.9	20	90	10	62	60	0	0	40	0.97
49737127--49737178	17	3.1	17	78	8	54	59	1	0	38	1.08
49748146--49748221	29	2.6	29	80	0	89	46	10	13	30	1.76
49749139--49749163	7	3.6	7	100	0	50	88	0	0	12	0.53
49762652--49762704	27	2.0	27	88	7	81	39	5	11	43	1.64
49764739--49764809	31	2.3	31	80	0	79	29	32	18	19	1.96
49764761--49764819	31	1.9	31	85	0	82	27	28	22	22	1.99
49764801--49764958	76	2.1	76	80	2	174	18	22	27	31	1.97
49765851--49765972	22	5.5	22	78	8	131	31	21	15	31	1.94
49765851--49765972	45	2.7	44	80	6	138	31	21	15	31	1.94
49766237--49766338	24	4.3	25	80	13	101	23	12	33	30	1.92
49766223--49766338	24	5.0	24	76	18	95	25	12	31	30	1.93
49766342--49766466	22	5.6	23	73	9	80	33	12	24	29	1.92
49766363--49766482	23	5.3	23	72	9	86	31	11	25	30	1.91
49766342--49766479	67	2.1	67	98	0	267	32	11	25	30	1.91
49769447--49769547	44	2.3	44	79	5	114	36	15	23	23	1.94
49772485--49772535	23	2.2	23	89	6	77	37	0	7	54	1.29
49777868--49777905	13	3.0	13	84	7	51	76	10	5	7	1.15
49777884--49777930	19	2.5	19	79	6	51	72	6	2	19	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49782609--49782640	16	1.9	17	93	6	57	43	12	0	43	1.42
49782591--49782632	21	2.0	20	86	4	57	50	7	0	42	1.30
49789782--49789807	12	2.2	12	100	0	52	30	19	7	42	1.79
49790628--49790696	27	2.5	26	81	4	75	17	36	28	17	1.93
49790749--49790895	10	15.3	9	69	24	72	70	0	27	0	0.96
49790743--49790889	38	3.7	37	81	12	134	69	0	29	0	0.94
49790749--49790889	44	3.3	43	87	5	180	70	0	28	0	0.92
49790748--49790857	14	7.7	14	72	15	91	70	0	30	0	0.88
49791294--49791337	21	2.1	21	100	0	88	52	0	9	38	1.33
49791447--49792015	159	3.6	157	72	15	497	52	7	9	30	1.61
49791315--49792044	322	2.3	322	92	1	1209	51	7	10	31	1.62
49806088--49806235	27	5.5	27	88	2	174	18	27	31	22	1.97
49806087--49806235	81	1.8	81	84	5	203	18	27	30	22	1.98
49811331--49811474	23	6.3	23	82	1	182	30	25	20	24	1.98
49811331--49811473	46	3.1	46	89	1	216	30	25	20	23	1.98
49817960--49818019	17	3.5	17	80	17	61	31	1	18	48	1.58
49817971--49818017	17	2.8	16	84	9	67	27	2	19	51	1.58
49819244--49819428	46	4.0	46	94	0	316	34	9	28	28	1.88
49822687--49822767	40	2.0	40	95	0	144	33	13	1	51	1.49
49828080--49828147	35	1.9	35	85	8	93	25	13	4	57	1.54
49839165--49839205	20	2.1	20	86	4	57	36	0	2	60	1.10
49841808--49842568	114	6.7	114	81	2	805	33	16	22	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49841879--49842553	228	3.0	228	92	0	1116	33	16	22	27	1.95
49843427--49843453	12	2.2	12	100	0	54	59	0	0	40	0.98
49844961--49845064	45	2.3	44	80	11	113	31	7	17	43	1.77
49846089--49846398	41	7.5	41	73	8	261	41	17	4	37	1.68
49846161--49846398	126	1.9	126	91	1	388	42	17	3	36	1.68
49846368--49846506	25	5.5	25	77	9	140	43	16	2	37	1.60
49846161--49846479	126	2.6	126	84	7	329	42	17	3	36	1.66
49846533--49846631	9	11.0	9	84	0	135	49	19	0	31	1.48
49846535--49846638	36	2.9	36	95	2	185	50	18	0	30	1.47
49852140--49852208	21	3.3	21	87	0	75	37	20	37	4	1.72
49852194--49852241	12	4.0	12	86	0	69	45	16	35	2	1.59
49852659--49852748	42	2.1	43	83	8	112	28	21	23	26	1.99
49852671--49853008	42	8.0	42	82	7	382	26	22	20	30	1.98
49855792--49855852	29	2.1	30	81	3	70	39	0	40	19	1.52
49855894--49855930	9	4.1	9	92	0	65	29	10	13	45	1.77
49855984--49856014	9	3.4	9	90	0	53	38	22	12	25	1.90
49858679--49858722	17	2.6	17	100	0	88	65	11	18	4	1.40
49860339--49860993	88	7.4	88	89	0	1013	28	27	24	19	1.99
49861445--49861690	44	5.7	44	73	8	150	29	21	22	26	1.99
49861447--49861691	129	1.9	129	78	5	271	28	21	22	27	1.99
49862002--49862055	19	2.7	21	88	5	76	37	7	14	40	1.74
49862397--49862444	3	16.0	3	91	0	51	27	4	6	62	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49862393--49862427	18	1.9	18	94	0	61	20	0	14	65	1.26
49862574--49862608	17	2.1	17	94	0	61	37	11	0	51	1.38
49864697--49864894	99	2.0	100	86	3	274	37	14	12	36	1.83
49865295--49865366	27	2.7	27	76	18	71	63	5	4	26	1.34
49868006--49868052	20	2.6	17	76	20	51	48	6	0	44	1.28
49872057--49872094	14	2.8	13	92	7	67	47	5	10	36	1.61
49872332--49872542	34	6.1	34	82	3	244	21	23	15	40	1.91
49872332--49872542	69	3.1	68	82	4	253	21	23	15	40	1.91
49872399--49872454	16	3.4	16	69	16	51	19	23	17	39	1.92
49872332--49872542	103	2.0	103	93	0	359	21	23	15	40	1.91
49879478--49879542	26	2.5	26	85	5	78	53	3	4	38	1.37
49883016--49883051	14	2.6	15	83	16	51	50	5	0	44	1.25
49888523--49889753	51	24.3	57	75	17	473	29	0	23	46	1.55
49888672--49889933	23	50.9	24	78	14	975	28	0	23	47	1.53
49888615--49889955	126	10.7	123	84	10	1154	28	0	23	47	1.54
49889747--49889813	35	1.9	34	88	8	100	23	0	32	43	1.54
49888539--49889945	149	9.3	149	81	13	1444	28	0	23	47	1.54
49892088--49892121	15	2.3	15	90	5	52	67	5	0	26	1.13
49892219--49892273	28	2.0	27	89	7	83	60	1	0	38	1.08
49892317--49892358	22	1.9	22	90	0	66	33	0	33	33	1.58
49892330--49892388	30	2.0	30	90	6	93	32	0	37	30	1.58
49892308--49892407	52	1.9	51	85	2	137	34	0	32	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49892360--49892407	22	2.2	22	92	0	78	37	0	31	31	1.58
49892805--49892863	29	2.0	30	83	6	75	40	0	40	18	1.51
49893488--49893530	21	2.0	21	90	0	68	23	11	13	51	1.74
49893853--49893908	29	1.9	29	89	7	87	23	16	21	39	1.92
49905872--49905974	42	2.5	42	79	6	109	45	15	21	17	1.85
49905873--49905974	21	4.9	21	77	4	89	46	15	21	16	1.84
49907320--49907360	20	2.0	22	85	9	59	39	31	4	24	1.76
49907866--49907988	42	2.9	42	79	0	129	43	17	22	17	1.88
49907875--49907975	21	4.8	21	65	12	55	45	17	21	14	1.85
49908091--49908179	24	3.7	24	90	0	142	24	28	7	39	1.83
49909488--49909581	24	3.9	24	92	2	161	23	28	8	39	1.84
49909486--49909581	49	2.0	49	97	0	183	22	28	8	40	1.83
49912596--49912872	46	6.0	46	91	0	437	29	26	8	35	1.86
49912596--49912868	138	2.0	138	95	0	492	29	26	8	35	1.86
49917593--49917706	44	2.7	42	87	2	147	22	20	28	28	1.98
49917593--49917706	42	2.6	44	84	5	144	22	20	28	28	1.98
49919104--49919176	32	2.3	31	95	4	128	38	8	19	34	1.81
49922276--49922336	27	2.3	27	82	5	70	27	9	29	32	1.89
49926163--49926187	13	1.9	13	100	0	50	12	0	0	88	0.53
49929628--49929702	39	1.9	39	100	0	150	42	33	0	24	1.55
49930848--49930917	34	2.0	35	83	2	88	41	18	0	40	1.51
49931764--49931801	19	2.0	19	89	0	58	36	5	2	55	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49932438--49932496	31	1.9	31	82	6	75	61	8	8	22	1.52
49942630--49942660	12	2.5	13	89	10	55	80	0	12	6	0.89
49943834--49943980	73	2.0	73	100	0	294	36	13	16	33	1.88
49949583--49949621	18	2.2	17	86	13	53	33	0	20	46	1.51
49949849--49949968	23	5.2	23	86	0	159	22	20	26	30	1.98
49949849--49949968	46	2.6	46	91	0	195	22	20	26	30	1.98
49951377--49951479	51	2.0	51	90	3	163	41	6	6	44	1.57
49953114--49953153	21	1.9	21	84	0	53	50	12	0	37	1.41
49957274--49957342	34	2.0	34	97	0	129	36	14	21	27	1.93
49965840--49965945	45	2.4	45	82	3	124	42	14	19	23	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214