genome.fa.s25.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  56  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15723141--15723172	15	2.1	16	94	5	57	71	0	21	6	1.07
15723255--15723288	18	1.9	18	88	5	52	52	2	35	8	1.47
15724553--15724606	20	2.7	20	82	0	63	24	20	18	37	1.94
15724553--15724626	30	2.5	30	86	8	98	21	20	18	39	1.93
15724553--15724617	20	3.2	20	71	16	53	23	21	16	38	1.93
15726351--15726401	11	4.9	11	78	9	54	35	27	11	25	1.91
15729245--15729307	21	3.0	21	88	2	81	33	31	4	30	1.78
15731142--15731187	17	2.8	17	90	3	76	71	0	15	13	1.14
15731144--15731183	16	2.5	16	95	0	71	77	0	12	10	0.99
15733944--15733987	22	2.0	22	95	0	79	25	36	4	34	1.76
15734304--15734339	12	2.8	13	91	8	65	75	0	5	19	1.00
15737603--15737863	40	6.5	40	77	6	244	24	25	22	26	2.00
15738169--15738247	29	2.7	29	86	5	106	27	32	15	24	1.95
15740154--15740232	37	2.1	37	86	4	106	26	30	17	25	1.97
15740351--15740875	47	11.1	47	91	1	816	28	29	9	32	1.88
15740351--15740875	143	3.7	141	91	1	816	28	29	9	32	1.88
15740406--15740875	190	2.5	190	96	0	859	29	28	8	32	1.88
15745602--15745664	21	3.0	21	88	2	81	33	31	4	30	1.78
15745997--15746033	15	2.5	15	95	0	65	75	0	13	10	1.04
15745996--15746034	16	2.5	16	87	4	62	76	0	12	10	1.01
15746996--15747037	17	2.5	17	80	0	57	78	4	11	4	1.06
15749237--15749286	26	2.0	25	84	11	66	70	8	4	18	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15750171--15750214	22	2.0	22	95	0	79	34	4	36	25	1.76
15751783--15751840	10	5.7	10	76	11	64	29	27	13	29	1.94
15751783--15751843	20	3.0	20	83	9	79	27	26	13	32	1.93
15753103--15753131	11	2.6	11	100	0	58	79	6	0	13	0.93
15753185--15753222	17	2.2	17	86	9	51	84	0	10	5	0.77
15754133--15754171	15	2.4	15	87	12	51	66	2	20	10	1.33
15755653--15755707	20	2.8	20	85	0	74	25	27	16	30	1.96
15757794--15757841	13	3.6	13	76	13	53	70	4	6	18	1.25
15757833--15757908	28	2.7	27	76	8	73	73	3	11	10	1.22
15758434--15758476	23	1.9	23	85	4	61	18	20	6	53	1.67
15758464--15758519	21	2.7	21	72	5	51	8	17	1	71	1.21
15758463--15758519	14	4.1	14	75	16	57	8	17	1	71	1.19
15758481--15758588	6	17.7	6	69	9	67	6	17	3	72	1.21
15759530--15759556	13	2.1	13	100	0	54	22	7	14	55	1.64
15759713--15759770	10	5.7	10	76	11	64	29	27	13	29	1.94
15759713--15759773	20	3.0	20	83	9	79	27	26	13	32	1.93
15767961--15767996	6	6.0	6	93	0	54	38	27	0	33	1.57
15768004--15768048	20	2.2	20	84	4	54	8	26	0	64	1.23
15768854--15768922	28	2.4	29	88	7	97	10	10	2	76	1.11
15768969--15769013	14	3.5	13	85	8	56	20	4	2	73	1.11
15768978--15769013	14	2.6	14	95	4	65	25	5	0	69	1.10
15768984--15769029	23	2.0	23	82	0	56	28	6	0	65	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15780097--15780143	20	2.3	20	81	0	58	29	34	12	23	1.92
15782697--15782802	48	2.2	47	85	9	135	59	1	24	14	1.45
15784472--15784518	20	2.3	20	81	0	58	29	34	12	23	1.92
15791763--15791805	17	2.6	16	78	10	50	72	2	0	25	0.97
15791772--15791807	18	2.0	18	89	10	56	75	2	0	22	0.94
15795519--15795572	20	2.7	20	82	0	63	24	20	18	37	1.94
15795519--15795592	30	2.5	30	86	8	98	21	20	18	39	1.93
15795519--15795583	20	3.2	20	71	16	53	23	21	16	38	1.93
15797186--15797219	11	2.8	12	91	8	52	79	8	2	8	1.03
15797187--15797221	12	2.8	13	86	4	54	80	5	2	11	1.00
15797187--15797263	14	5.5	14	73	21	56	75	3	6	14	1.15
15797198--15797252	15	3.5	16	81	18	71	74	3	5	16	1.15
15797198--15797252	16	3.4	17	73	16	53	74	3	5	16	1.15
15798336--15798369	18	1.9	18	88	5	52	52	2	35	8	1.47
15799635--15799688	20	2.7	20	82	0	63	24	20	18	37	1.94
15799635--15799708	30	2.5	30	86	8	98	21	20	18	39	1.93
15799635--15799699	20	3.2	20	71	16	53	23	21	16	38	1.93
15803896--15803955	22	2.7	23	73	19	63	66	6	0	26	1.16
15803905--15803938	4	8.0	4	90	9	50	73	2	0	23	0.97
15804675--15804716	19	2.2	19	91	0	66	7	11	2	78	1.04
15804684--15804737	24	2.2	26	86	6	76	5	16	1	75	1.07
15806756--15806794	20	1.9	20	94	5	69	28	12	5	53	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15806933--15806957	13	1.9	13	100	0	50	16	8	0	76	1.02
15807121--15807169	24	2.0	24	100	0	98	46	4	16	32	1.65
15807296--15807339	22	2.0	22	95	0	79	34	4	36	25	1.76
15813140--15813197	27	2.1	27	83	3	71	44	13	8	32	1.75
15818076--15818118	22	1.9	23	90	4	70	25	4	32	37	1.77
15819725--15819771	20	2.3	20	81	0	58	23	12	34	29	1.92
15820582--15820628	20	2.3	20	85	0	67	29	36	12	21	1.91
15833770--15833799	8	3.8	8	100	0	60	23	0	53	23	1.46
15833911--15833984	23	3.2	23	94	1	130	10	13	5	70	1.32
15837573--15837615	16	2.7	16	100	0	86	67	0	9	23	1.19
15837601--15837639	12	3.2	12	78	7	51	74	2	7	15	1.15
15837605--15837638	13	2.6	13	90	0	50	82	2	5	8	0.93
15837616--15837689	28	2.6	28	79	6	87	68	8	13	9	1.38
15837616--15837689	29	2.6	28	81	6	87	68	8	13	9	1.38
15838558--15838592	18	1.9	18	88	11	54	57	0	20	22	1.41
15848387--15848422	17	2.1	18	89	5	56	8	22	5	63	1.43
15851415--15851460	12	3.8	12	85	5	65	82	2	4	10	0.89
15853111--15853177	21	3.1	21	82	4	71	34	32	2	29	1.73
15853476--15853523	12	3.9	12	89	10	71	72	2	8	16	1.18
15855570--15855616	21	2.2	21	77	7	51	72	4	17	6	1.22
15855584--15855639	17	3.2	17	74	18	51	73	3	14	8	1.21
15859881--15859947	21	3.1	21	82	4	71	34	32	2	29	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15869043--15869077	18	1.9	18	88	11	54	57	0	20	22	1.41
15875295--15875346	24	2.2	24	83	10	63	13	23	1	61	1.42
15878722--15878774	23	2.4	22	76	20	56	9	18	1	69	1.25
15880310--15882002	847	2.0	846	99	0	3350	38	17	17	27	1.92
15882943--15882969	14	1.9	14	100	0	54	14	7	7	70	1.32
15888265--15888329	20	3.3	19	73	16	51	38	16	21	23	1.93
15890109--15890171	33	1.9	33	84	12	85	12	26	6	53	1.62
15890218--15890289	18	3.9	18	79	1	81	6	16	6	69	1.33
15890218--15890291	36	2.0	37	89	2	114	6	17	6	68	1.34
15890186--15890270	6	13.8	6	70	4	53	5	20	4	69	1.28
15894980--15895069	10	8.9	10	71	11	58	18	31	13	36	1.90
15894980--15895064	30	2.8	31	74	15	88	18	32	14	34	1.91
15895824--15895889	21	3.0	22	82	4	71	31	4	28	34	1.78
15898179--15898268	46	2.0	46	93	4	155	25	16	22	35	1.95
15898586--15898629	11	3.9	11	82	5	52	75	9	0	15	1.05
15898586--15898627	12	3.6	12	87	3	59	78	7	0	14	0.95
15898670--15898716	14	3.6	14	83	11	64	72	0	8	19	1.10
15898665--15898716	27	2.0	25	92	7	86	65	0	11	23	1.25
15898668--15898716	13	3.8	13	81	5	55	69	0	10	20	1.17
15900498--15900541	22	2.0	22	95	0	79	34	4	36	25	1.76
15904253--15904290	10	3.8	10	83	13	51	26	15	28	28	1.96
15904255--15904301	20	2.3	20	92	0	76	23	17	34	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15905007--15905244	119	2.0	119	100	0	476	32	13	20	33	1.91
15905687--15905780	46	2.0	46	91	4	154	24	17	22	36	1.95
15907588--15907614	7	3.9	7	100	0	54	59	14	11	14	1.62
15912279--15912323	19	2.3	20	88	3	65	6	13	2	77	1.05
15915213--15915260	13	3.6	13	91	5	78	68	0	10	20	1.18
15915212--15915260	14	3.6	14	91	5	82	69	0	10	20	1.17
15916647--15916693	20	2.3	20	81	0	58	29	34	12	23	1.92
15922426--15922473	15	3.3	14	80	8	60	4	18	0	77	0.93
15922426--15922484	21	2.8	21	87	5	75	6	22	0	71	1.09
15923371--15923444	31	2.4	32	88	6	116	9	12	2	75	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214