genome.fa.s25.2.7.7.80.10.50.1000.214.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  214  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63422893--63423185	120	2.4	120	92	2	482	42	2	5	50	1.36
63423014--63423048	18	2.0	17	88	5	52	40	0	0	60	0.97
63423134--63423168	18	2.0	17	88	5	52	45	0	0	54	0.99
63423122--63423396	147	1.9	149	96	1	509	46	2	3	46	1.35
63423281--63423315	18	2.0	17	88	5	52	45	0	0	54	0.99
63423285--63423357	28	2.7	27	76	8	76	45	0	2	52	1.15
63423477--63423571	45	2.1	45	88	1	138	32	27	5	34	1.79
63423550--63423595	16	2.9	16	93	0	74	32	34	0	32	1.58
63423552--63423603	16	3.2	16	86	5	70	34	34	0	30	1.58
63429026--63429058	12	2.8	12	86	13	50	42	12	3	42	1.57
63439088--63439124	12	3.1	12	88	0	56	13	2	18	64	1.39
63440981--63441011	11	2.8	11	90	0	53	0	16	0	83	0.64
63449557--63449599	23	1.9	23	86	13	63	39	0	0	60	0.97
63456501--63456550	26	1.9	26	87	0	73	32	26	22	20	1.98
63466846--63466900	3	18.0	3	92	3	92	63	0	3	32	1.12
63471625--63471657	3	11.0	3	100	0	66	66	0	0	33	0.92
63475927--63475975	18	2.8	17	81	6	53	46	0	0	53	1.00
63478344--63478428	38	2.1	38	82	10	98	42	10	2	44	1.51
63494867--63495034	57	3.0	57	82	7	193	28	26	19	26	1.98
63496998--63497058	17	3.6	17	80	8	70	27	11	14	45	1.80
63496994--63497058	34	1.9	34	90	0	103	29	10	16	43	1.82
63501921--63501983	17	3.7	17	72	16	58	30	11	15	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63501917--63501981	34	1.9	34	90	0	103	30	10	16	41	1.83
63512535--63512585	25	2.0	25	82	14	61	66	1	1	29	1.13
63513263--63513296	17	2.0	17	100	0	68	23	17	17	41	1.90
63519340--63519366	8	3.4	8	100	0	54	44	0	0	55	0.99
63522494--63522554	9	6.8	9	90	0	77	42	24	8	24	1.82
63524144--63524206	28	2.2	28	88	5	92	42	6	0	50	1.27
63524530--63524567	18	2.1	18	90	0	58	47	0	13	39	1.42
63525166--63525195	15	1.9	16	93	6	53	6	6	20	66	1.38
63525192--63525247	28	2.0	28	93	6	96	37	0	8	53	1.32
63525202--63525265	28	2.4	27	86	5	85	42	0	9	48	1.35
63526806--63526831	12	2.2	12	100	0	52	73	0	0	26	0.84
63544124--63544160	12	2.9	13	88	8	58	32	0	0	67	0.91
63544114--63544180	29	2.2	29	79	10	73	32	0	0	67	0.91
63544205--63544275	29	2.4	29	80	0	79	33	19	4	42	1.71
63544380--63544546	86	1.9	86	87	0	244	32	27	20	19	1.96
63551553--63551583	6	5.2	6	96	0	53	32	54	0	12	1.38
63551541--63551583	18	2.4	18	84	0	59	32	51	2	13	1.54
63552099--63552140	22	2.0	22	85	4	59	30	9	0	59	1.29
63552754--63552804	15	3.5	15	76	15	61	37	0	0	62	0.95
63552757--63552803	14	3.3	14	79	5	58	36	0	0	63	0.94
63553226--63553270	23	2.0	23	100	0	90	55	0	0	44	0.99
63555431--63555477	21	2.2	22	92	3	78	21	38	19	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63614177--63614225	19	2.8	17	79	14	55	42	0	30	26	1.55
63614313--63614370	30	1.9	30	89	0	89	43	0	37	18	1.51
63614585--63614621	9	4.1	9	85	0	56	29	10	16	43	1.82
63616302--63616396	44	2.2	44	86	3	129	53	6	4	35	1.46
63618994--63619053	30	2.0	31	83	3	77	41	0	38	20	1.52
63619273--63619309	9	4.1	9	92	0	65	29	10	13	45	1.77
63619574--63619599	6	4.3	6	100	0	52	34	0	0	65	0.93
63619745--63619770	4	6.5	4	100	0	52	23	0	0	76	0.78
63621690--63621715	3	8.7	3	100	0	52	34	0	0	65	0.93
63622534--63622618	40	2.1	39	82	8	100	30	5	22	41	1.77
63622546--63622632	40	2.2	39	85	4	111	31	6	21	40	1.80
63622836--63622934	45	2.2	45	85	0	126	22	17	18	42	1.89
63635542--63635566	12	2.1	12	100	0	50	40	0	28	32	1.57
63636345--63636441	16	6.1	16	92	4	126	29	0	32	37	1.58
63636345--63636441	32	3.0	32	92	3	151	29	0	32	37	1.58
63636345--63636441	48	2.0	48	91	0	158	29	0	32	37	1.58
63640585--63640646	20	3.2	20	73	13	58	38	4	4	51	1.45
63645485--63645511	13	2.1	13	100	0	54	48	0	7	44	1.31
63648298--63648466	82	2.1	82	97	0	320	25	17	17	39	1.91
63651412--63651526	56	2.0	57	98	1	223	23	0	15	60	1.35
63657639--63657665	12	2.2	12	100	0	54	51	14	0	33	1.43
63659764--63659789	2	13.0	2	100	0	52	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63665828--63665875	24	2.0	24	87	0	69	39	0	52	8	1.32
63665840--63665875	12	3.0	12	83	0	54	38	0	58	2	1.13
63668131--63668696	283	2.0	283	99	0	1114	29	16	16	38	1.90
63669233--63669268	9	4.0	9	92	0	54	5	22	0	72	1.05
63671824--63671850	11	2.5	11	100	0	54	62	0	0	37	0.95
63680817--63680863	24	2.0	24	82	0	58	55	6	12	25	1.61
63685634--63685669	3	12.0	3	100	0	72	66	0	0	33	0.92
63692177--63692212	11	3.5	11	78	21	51	30	5	16	47	1.70
63692175--63692214	19	2.1	19	100	0	80	32	5	15	47	1.66
63697861--63697898	16	2.4	16	100	0	76	36	5	28	28	1.79
63702881--63702931	24	2.1	24	88	0	75	35	3	9	50	1.54
63718603--63718682	30	2.7	30	82	7	92	38	5	5	51	1.46
63721910--63721971	31	1.9	32	84	12	83	53	4	1	40	1.32
63722796--63722824	14	2.1	14	93	6	51	48	0	0	51	1.00
63723380--63723439	31	2.0	31	87	9	88	38	13	5	43	1.66
63724232--63724275	21	2.1	21	82	0	52	2	13	4	79	0.98
63730455--63730489	3	11.7	3	93	0	52	68	5	0	25	1.11
63735916--63735987	2	36.5	2	83	2	65	56	5	37	0	1.22
63753837--63753867	16	1.9	16	93	0	53	48	0	9	41	1.36
63757912--63757946	15	2.2	16	90	5	54	57	17	8	17	1.64
63762588--63762638	25	2.0	26	88	3	77	56	1	1	39	1.22
63762990--63763927	151	6.3	152	85	7	1208	30	10	7	52	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63763423--63763862	143	3.0	141	84	9	544	29	10	7	52	1.63
63762982--63763936	299	3.2	294	85	7	1205	31	10	7	51	1.62
63762990--63763927	451	2.1	445	86	6	1318	30	10	7	52	1.62
63779355--63779381	7	3.9	7	100	0	54	29	0	11	59	1.32
63779348--63779384	14	2.7	13	88	12	56	29	2	8	59	1.40
63787086--63787126	7	5.9	7	100	0	82	29	0	12	58	1.34
63787079--63787129	21	2.5	20	90	9	84	29	1	9	58	1.41
63789408--63789435	3	9.3	3	100	0	56	67	0	0	32	0.91
63792476--63792514	3	13.0	3	94	0	69	0	30	0	69	0.89
63798744--63798800	20	3.0	19	80	7	62	52	8	3	35	1.50
63807835--63807877	11	3.8	11	80	17	52	30	2	2	65	1.18
63807838--63807881	23	1.9	23	90	0	70	31	2	4	61	1.28
63814588--63814641	12	4.3	12	78	17	56	59	3	18	18	1.52
63814585--63814636	13	4.1	13	78	14	63	61	5	17	15	1.52
63815988--63816031	22	2.0	22	100	0	88	36	4	50	9	1.55
63826567--63826622	27	2.1	27	96	0	85	51	3	1	42	1.29
63826966--63827094	9	13.9	9	67	16	59	61	3	3	31	1.30
63827026--63827062	19	1.9	19	88	0	56	64	5	2	27	1.28
63827047--63827094	19	2.6	18	81	15	62	60	4	2	33	1.27
63832371--63832409	21	1.9	19	90	10	60	61	2	0	35	1.10
63832425--63832491	18	3.7	18	75	13	66	46	2	2	47	1.33
63833808--63833975	58	3.0	58	87	10	237	22	13	30	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63833827--63833917	28	3.2	28	66	22	80	25	15	31	27	1.95
63833868--63834010	49	2.9	49	93	0	232	23	13	30	32	1.94
63837203--63837405	46	4.3	48	88	7	265	35	14	21	28	1.92
63837137--63837405	98	2.7	98	93	0	457	34	14	22	28	1.93
63837369--63837514	37	4.0	37	93	1	242	36	16	21	24	1.94
63838375--63838754	7	52.6	7	76	8	226	13	4	42	40	1.63
63838375--63838754	22	17.5	21	74	8	226	13	4	42	40	1.63
63838573--63838685	8	15.1	8	78	10	98	13	0	39	46	1.49
63838721--63838761	21	2.0	21	95	0	73	7	0	48	43	1.30
63840681--63840714	14	2.4	14	90	0	50	47	2	0	50	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214

The End!