genome.fa.s25.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  186  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54658429--54658568	40	3.6	38	74	9	113	27	17	22	31	1.97
54658855--54658885	9	3.4	9	90	0	53	25	12	22	38	1.90
54658939--54658975	9	4.1	9	92	0	65	45	13	10	29	1.77
54659011--54659053	21	2.0	21	82	8	52	25	32	0	41	1.56
54661320--54661373	28	2.0	27	89	10	85	38	11	3	46	1.57
54663341--54663374	3	11.3	3	93	0	59	29	2	0	67	1.05
54668178--54668207	15	2.0	15	93	0	51	3	26	0	70	1.03
54679289--54679633	126	2.8	125	86	2	469	31	15	21	32	1.94
54682663--54682880	116	1.9	116	91	1	357	43	10	9	37	1.70
54682962--54683132	45	3.7	45	81	13	220	26	0	25	47	1.56
54682889--54683116	118	1.9	117	91	2	377	26	0	25	47	1.58
54684116--54684507	45	8.4	45	86	8	484	25	1	26	46	1.60
54684178--54684273	29	3.5	30	71	25	104	19	1	33	45	1.58
54684116--54684507	96	4.2	90	88	8	484	25	1	26	46	1.60
54684116--54684500	146	2.7	140	91	3	592	25	1	27	46	1.61
54685037--54685076	18	2.2	18	100	0	80	40	5	30	25	1.77
54685728--54685752	7	3.6	7	100	0	50	60	12	0	28	1.32
54686911--54686998	40	2.2	40	95	0	158	44	0	22	32	1.53
54686973--54687028	22	2.5	22	97	2	103	39	0	32	28	1.57
54686989--54687045	10	5.2	11	74	21	57	43	0	35	21	1.52
54687452--54687798	9	37.3	9	65	17	65	36	2	4	57	1.29
54687864--54687896	18	1.9	17	88	11	50	75	6	3	15	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54693132--54693161	15	2.0	15	93	0	51	6	23	20	50	1.71
54694191--54694227	19	1.9	19	94	0	65	32	18	18	29	1.96
54696150--54696199	26	2.0	25	92	4	82	44	2	2	52	1.24
54696246--54696280	18	2.0	17	88	5	52	45	0	0	54	0.99
54696139--54696422	120	2.4	120	89	2	437	44	1	4	48	1.33
54696366--54696400	18	2.0	17	88	5	52	45	0	0	54	0.99
54696366--54696420	15	3.4	16	80	16	53	47	0	1	50	1.11
54696636--54696687	16	3.2	16	94	0	95	38	34	0	26	1.57
54697024--54697067	22	2.0	22	82	8	54	59	2	0	38	1.10
54698412--54698443	7	4.6	7	100	0	64	40	0	0	59	0.97
54701935--54702071	43	3.2	42	80	10	134	34	21	17	27	1.95
54702713--54702757	9	5.1	9	82	15	58	44	0	2	53	1.13
54703102--54703133	17	2.0	17	88	11	50	62	15	21	0	1.32
54704125--54704297	45	4.2	39	76	14	125	18	21	21	38	1.93
54704152--54704297	45	3.2	45	86	1	195	17	20	21	40	1.92
54705583--54705614	10	3.2	10	95	0	55	59	3	9	28	1.44
54706979--54707039	30	2.0	30	90	0	95	34	16	4	44	1.69
54706982--54707047	30	2.2	30	86	0	87	39	16	3	40	1.64
54707529--54707608	19	4.1	19	76	13	74	72	0	27	0	0.85
54707529--54707590	23	2.9	22	79	13	67	70	0	29	0	0.87
54707536--54707606	21	3.3	23	73	16	71	76	0	23	0	0.79
54707556--54707608	17	3.1	17	81	8	54	75	0	24	0	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54707765--54707814	12	4.5	11	90	9	75	82	2	16	0	0.77
54707765--54707816	23	2.3	22	87	12	79	82	1	15	0	0.75
54708140--54708214	19	4.0	18	76	13	71	32	17	10	40	1.84
54708140--54708210	18	3.9	17	78	14	70	32	16	11	39	1.84
54708412--54708650	18	13.3	18	67	21	58	30	12	10	46	1.74
54708451--54708621	35	4.9	35	79	7	168	31	11	10	46	1.73
54708447--54708648	18	11.7	17	74	12	128	30	11	10	47	1.74
54708735--54708788	27	2.0	27	96	0	99	27	22	20	29	1.98
54710392--54710803	38	11.2	37	72	17	195	43	9	12	34	1.75
54710521--54710601	21	4.0	21	70	20	66	43	6	11	39	1.65
54710578--54710683	56	1.9	55	86	5	151	42	10	13	33	1.78
54710437--54710790	17	19.2	18	69	15	190	44	9	12	32	1.75
54711267--54711317	9	5.7	9	82	15	61	0	15	0	84	0.63
54711267--54711320	26	2.1	25	86	3	72	0	14	0	85	0.61
54711267--54711320	16	3.2	17	87	10	67	0	14	0	85	0.61
54711278--54711320	17	2.6	16	82	10	50	0	13	0	86	0.58
54711566--54711600	13	2.6	13	90	4	52	0	34	0	65	0.93
54711566--54711633	19	3.6	18	78	11	64	1	30	0	67	0.99
54712128--54712252	30	4.2	30	84	2	144	40	4	22	32	1.75
54712431--54713358	76	11.8	75	85	10	1187	36	18	16	28	1.93
54712431--54713356	239	3.9	231	86	8	1305	36	19	16	28	1.93
54713329--54713386	30	2.0	29	82	3	71	48	6	12	32	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54714211--54714330	1	120.0	1	64	0	51	1	7	8	82	0.91
54714211--54714330	9	12.9	9	74	18	79	1	7	8	82	0.91
54714220--54714305	39	2.2	39	91	6	140	1	6	10	81	0.93
54714220--54714330	39	2.8	40	86	6	122	1	7	9	81	0.93
54717912--54717940	4	7.2	4	100	0	58	51	0	24	24	1.48
54719639--54719673	18	1.9	18	88	0	52	34	8	8	48	1.64
54719677--54719725	21	2.5	19	84	12	71	44	8	10	36	1.68
54719683--54719733	21	2.4	21	100	0	102	50	11	9	27	1.70
54719725--54719763	16	2.4	17	95	4	71	53	15	10	20	1.70
54719789--54719829	20	2.0	20	90	4	64	36	7	17	39	1.77
54719816--54719959	56	2.6	55	75	15	150	45	9	11	33	1.72
54719724--54720056	17	18.2	18	69	15	193	45	9	11	33	1.72
54719725--54720057	38	9.1	37	72	14	205	45	9	11	33	1.73
54720541--54720610	7	9.9	7	86	7	97	0	15	0	84	0.63
54720613--54720653	14	2.7	15	82	17	50	2	29	36	31	1.71
54720705--54720747	17	2.4	19	80	11	54	0	13	13	72	1.13
54721404--54721528	30	4.2	30	85	6	137	37	5	24	32	1.79
54725412--54725681	18	15.2	17	71	15	147	30	13	9	47	1.74
54725450--54725654	35	5.9	36	74	5	179	30	13	9	46	1.75
54725564--54725680	52	2.3	50	82	7	137	30	14	11	42	1.82
54725549--54725681	69	1.9	68	82	10	164	29	15	11	44	1.81
54729717--54729754	16	2.2	18	86	9	53	68	2	26	2	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54733118--54733156	18	2.1	19	85	4	53	74	0	23	2	0.94
54733258--54733507	115	2.3	108	88	6	362	27	1	14	57	1.46
54735165--54735203	13	2.8	13	88	11	51	30	2	0	66	1.05
54737308--54737338	3	10.0	3	93	6	53	32	0	0	67	0.91
54737311--54737337	13	2.1	13	100	0	54	29	0	0	70	0.88
54737308--54737338	16	1.9	16	100	0	62	32	0	0	67	0.91
54741693--54741731	17	2.3	17	90	0	60	46	0	2	51	1.14
54741702--54741746	9	5.1	9	82	15	58	44	0	2	53	1.13
54742093--54742124	17	2.0	17	88	11	50	62	15	21	0	1.32
54743134--54743277	45	3.2	45	85	3	166	20	18	20	40	1.91
54743872--54743900	9	3.2	9	100	0	58	20	0	34	44	1.52
54754323--54754385	28	2.2	28	81	13	76	25	7	4	61	1.43
54754547--54754612	26	2.4	28	75	10	82	31	9	9	50	1.65
54756354--54756513	79	2.0	79	100	0	320	40	20	12	26	1.88
54756378--54756508	39	3.3	39	70	10	131	38	19	12	29	1.89
54757148--54757275	42	3.0	42	79	15	138	32	27	18	21	1.97
54758145--54758190	25	1.9	23	83	16	58	39	13	0	47	1.42
54758153--54758205	23	2.3	22	84	12	70	37	11	0	50	1.38
54760979--54761028	21	2.4	21	79	0	55	18	30	0	52	1.46
54762806--54762892	21	4.1	21	81	7	104	35	22	21	19	1.96
54762806--54762892	44	2.0	41	82	6	102	35	22	21	19	1.96
54763075--54763136	18	3.4	18	72	16	65	35	20	0	43	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54763073--54763170	36	2.6	37	85	7	119	32	20	1	45	1.58
54763222--54763261	16	2.5	16	88	11	64	25	25	0	50	1.50
54764101--54764138	14	2.4	17	87	12	55	52	2	0	44	1.14
54764130--54764179	21	2.5	20	76	3	55	52	2	0	46	1.12
54799992--54800042	23	2.2	23	96	0	93	23	21	27	27	1.99
54802195--54802232	18	2.1	18	90	0	58	21	26	10	42	1.85
54802651--54802746	34	2.9	33	80	10	110	41	6	6	45	1.54
54802710--54802919	116	1.8	117	82	9	277	41	4	6	47	1.51
54805902--54806318	126	3.3	126	94	0	728	26	21	19	32	1.97
54806351--54806628	97	2.9	94	78	5	301	41	16	3	39	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214