genome.fa.s25.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  194  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56874363--56874403	19	2.1	20	90	4	66	53	4	4	36	1.44
56875133--56875171	19	2.2	17	90	9	60	30	0	5	64	1.15
56879829--56880087	127	2.0	128	96	0	475	43	16	12	27	1.84
56882191--56882272	29	2.8	30	83	7	80	31	20	4	42	1.73
56882188--56882290	30	3.5	28	79	11	98	33	18	3	44	1.68
56882846--56882911	14	5.1	14	72	18	54	74	0	25	0	0.82
56882849--56882892	21	2.1	21	83	8	54	72	0	27	0	0.85
56883016--56883081	25	2.6	26	81	13	93	66	7	25	0	1.18
56883011--56883080	23	3.0	23	84	10	88	68	7	24	0	1.14
56883112--56883162	24	2.2	24	86	10	70	21	45	29	3	1.70
56883135--56883172	19	1.9	19	89	5	58	26	44	26	2	1.67
56883183--56883242	10	6.0	10	84	0	66	80	0	18	1	0.80
56883183--56883241	20	3.1	18	80	17	73	79	0	18	1	0.81
56883548--56883812	17	14.7	18	69	14	120	34	12	11	41	1.79
56883692--56883799	18	5.9	19	75	15	70	34	12	10	43	1.76
56883824--56883856	17	1.9	17	93	0	57	48	9	6	36	1.60
56890742--56890767	12	2.2	12	100	0	52	42	7	42	7	1.62
56891492--56891519	5	5.6	5	100	0	56	60	17	0	21	1.36
56893619--56893643	13	1.9	13	100	0	50	56	0	0	44	0.99
56894152--56894448	126	2.4	126	85	4	402	34	17	19	28	1.95
56898137--56898175	18	2.2	18	85	0	51	43	7	30	17	1.77
56900016--56900085	11	6.4	11	77	11	72	44	0	32	22	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56900016--56900085	33	2.1	33	86	5	97	44	0	32	22	1.53
56900020--56900087	22	3.1	21	85	8	84	45	0	30	23	1.53
56901184--56901214	15	2.1	15	93	0	53	9	0	16	74	1.07
56904847--56904872	4	6.5	4	100	0	52	26	0	73	0	0.84
56910994--56911102	47	2.2	50	82	6	134	20	13	30	35	1.91
56911650--56911726	25	3.2	25	80	5	88	19	23	18	38	1.93
56914397--56914444	25	2.0	24	91	4	78	14	25	22	37	1.92
56918136--56918160	11	2.3	11	100	0	50	48	0	8	44	1.32
56930000--56930074	34	2.2	35	88	4	109	44	1	1	53	1.17
56946278--56946327	3	17.3	3	79	8	59	30	0	4	66	1.10
56946281--56946322	18	2.4	18	92	4	68	28	0	4	66	1.12
56954541--56954600	27	2.2	27	80	19	63	68	1	1	28	1.09
56957282--56957332	17	2.9	17	88	2	66	35	7	17	39	1.79
56961818--56961910	39	2.4	39	96	0	168	18	18	21	41	1.90
56961818--56962017	45	4.4	45	79	10	196	19	19	20	41	1.91
56961818--56962017	90	2.2	87	82	10	235	19	19	20	41	1.91
56961861--56962019	51	3.2	51	75	11	177	20	18	20	40	1.91
56986299--56986361	21	3.0	21	75	9	74	19	20	17	42	1.89
56986242--56986367	42	3.0	42	80	3	139	21	20	15	42	1.89
56986255--56986389	42	3.2	42	80	2	128	18	21	17	42	1.90
56988132--56988172	21	1.9	22	90	5	66	29	4	21	43	1.73
56988993--56989023	16	1.9	16	93	0	53	83	3	9	3	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56989017--56989737	205	3.5	201	78	10	780	42	13	14	29	1.83
56989394--56989793	107	3.9	97	81	9	361	44	14	14	27	1.84
56989492--56989793	107	2.8	106	87	2	381	43	14	14	28	1.84
56989016--56989827	205	4.0	203	78	12	640	41	13	14	30	1.84
56994772--56995421	112	5.8	109	82	10	780	31	15	13	39	1.86
56996368--56996437	27	2.5	30	79	11	85	25	11	7	55	1.60
56996371--56996429	26	2.1	29	84	9	79	22	11	8	57	1.61
56997452--56997511	31	1.9	32	86	10	88	53	3	3	40	1.34
56999008--56999073	8	8.0	8	83	11	80	80	0	16	3	0.84
57010995--57011024	4	7.5	4	100	0	60	50	0	26	23	1.50
57013087--57013152	28	2.4	27	75	12	71	66	3	0	30	1.06
57014270--57014308	20	2.0	18	85	14	51	48	0	0	51	1.00
57014269--57014315	21	2.2	20	78	17	51	46	0	2	51	1.13
57023340--57023387	24	1.9	25	84	16	64	2	29	0	68	1.01
57033499--57033525	2	13.5	2	100	0	54	48	0	0	51	1.00
57039826--57039859	12	2.8	12	81	0	50	44	23	23	8	1.81
57041418--57041461	23	1.9	23	85	0	61	31	9	15	43	1.79
57042511--57042562	22	2.4	22	81	15	63	76	1	17	3	1.02
57043782--57044149	132	2.8	132	86	1	515	31	18	22	26	1.97
57044137--57044956	100	8.2	100	86	1	1034	31	21	21	25	1.98
57044159--57044957	201	4.0	201	86	1	1066	31	21	21	25	1.98
57044160--57044960	50	16.0	50	73	2	548	31	21	21	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57045771--57045805	18	2.0	18	88	5	54	65	8	14	11	1.46
57052022--57052072	24	2.1	24	82	10	59	35	23	27	13	1.93
57060041--57060131	32	2.8	32	96	0	164	40	24	12	23	1.88
57060368--57060441	37	2.0	37	97	0	139	41	18	17	21	1.90
57070248--57070362	45	2.6	45	94	2	198	33	15	24	26	1.95
57073703--57073749	14	3.1	15	81	6	51	61	0	6	31	1.21
57073939--57073987	3	15.7	3	79	8	53	61	2	6	30	1.32
57073954--57073997	19	2.2	20	88	4	63	61	4	6	27	1.41
57074874--57074930	22	2.6	22	82	0	69	15	21	50	12	1.76
57078082--57078116	15	2.3	15	85	0	52	77	8	8	5	1.13
57083183--57083263	42	1.9	42	84	0	108	19	22	16	41	1.89
57084932--57084990	28	2.1	27	84	9	75	55	5	1	37	1.32
57093304--57093344	21	2.0	21	90	0	64	19	29	21	29	1.98
57095426--57095779	176	2.0	176	99	0	699	29	25	16	29	1.96
57103908--57104022	47	2.4	47	79	2	124	40	15	15	27	1.88
57114298--57114333	15	2.4	16	90	9	58	30	5	0	63	1.17
57118696--57118835	43	3.3	43	83	6	142	18	18	33	29	1.95
57118824--57119011	86	2.2	85	83	3	225	27	31	17	23	1.97
57118824--57119031	43	4.8	43	77	3	168	29	31	16	22	1.96
57118885--57119056	86	2.0	86	81	0	200	29	30	15	24	1.96
57119382--57119477	21	4.6	21	86	0	111	6	41	14	37	1.71
57119450--57119494	21	2.1	21	87	0	63	4	42	15	37	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57119465--57119611	66	2.2	66	85	4	190	12	28	17	40	1.87
57119506--57119634	66	2.0	66	85	3	179	14	24	17	42	1.87
57121768--57121807	13	2.7	15	88	11	57	35	0	20	45	1.51
57121768--57121844	16	4.9	16	78	10	70	35	1	16	46	1.56
57123295--57123328	15	2.3	15	94	0	59	64	11	17	5	1.45
57123551--57123587	11	3.4	11	96	0	65	54	2	5	37	1.38
57124772--57124823	27	1.9	27	88	0	77	50	9	0	40	1.35
57124891--57124927	10	3.7	10	92	0	65	43	13	0	43	1.44
57126775--57126842	15	4.9	14	77	12	61	42	32	0	25	1.55
57127384--57127644	41	6.3	43	77	8	258	39	22	22	14	1.91
57127384--57127645	82	3.2	82	90	2	393	39	22	23	14	1.91
57127384--57127644	123	2.1	123	80	4	285	39	22	22	14	1.91
57128015--57128051	19	2.0	19	94	5	67	27	5	16	51	1.66
57133108--57133140	15	2.1	16	88	5	50	63	0	6	30	1.18
57142867--57143355	113	4.3	114	83	4	603	25	21	24	28	1.99
57142841--57143355	227	2.3	229	85	5	704	26	21	23	27	1.99
57143262--57143442	74	2.5	75	81	11	223	26	23	23	25	2.00
57143769--57143801	14	2.3	15	94	5	59	33	0	30	36	1.58
57144436--57144486	20	2.5	20	87	3	66	13	0	37	49	1.43
57145366--57145817	147	3.1	146	78	4	365	25	15	23	36	1.93
57145457--57145835	146	2.6	146	77	5	363	26	16	23	34	1.95
57147671--57147696	7	3.7	7	100	0	52	26	11	0	61	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57147920--57147972	18	2.8	19	83	10	65	39	1	1	56	1.21
57148123--57148287	13	12.5	13	73	7	127	40	9	4	45	1.56
57148147--57148296	53	2.8	53	94	0	264	41	10	4	44	1.56
57148491--57148540	16	3.4	16	73	21	63	46	18	2	34	1.60
57148456--57148540	28	2.9	28	87	8	107	44	17	3	34	1.66
57148489--57148725	67	3.6	67	74	16	260	43	14	1	39	1.56
57148553--57148627	28	2.6	30	81	6	84	44	14	1	40	1.54
57148489--57148730	129	1.9	124	90	4	385	43	14	2	40	1.57
57148519--57148793	129	2.1	129	86	7	373	44	15	2	38	1.60
57148777--57149217	9	50.8	9	72	14	329	45	21	1	31	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214