genome.fa.s25.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  170  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49966072--49966146	27	2.8	27	81	0	78	36	14	26	22	1.93
49969392--49969511	32	3.7	33	80	4	131	34	8	17	40	1.80
49969392--49969526	30	4.3	30	77	7	126	34	8	17	40	1.79
49972095--49972241	30	4.8	30	83	3	159	31	8	18	40	1.81
49972439--49972555	41	2.8	41	94	1	198	28	20	22	29	1.98
49978818--49979095	30	8.9	30	81	7	304	31	8	17	41	1.81
49978818--49979123	94	3.2	93	85	5	384	31	8	17	42	1.80
49978818--49979095	60	4.5	61	83	6	335	31	8	17	41	1.81
49982187--49982230	12	3.8	11	82	8	52	50	15	15	18	1.79
49982186--49982215	11	2.6	12	89	10	53	53	16	13	16	1.73
49982827--49982868	20	2.3	17	88	12	57	23	2	0	73	0.94
49984703--49984741	16	2.4	16	95	0	69	35	7	25	30	1.84
49984908--49985031	58	2.1	57	88	2	176	53	3	0	43	1.17
49989653--49989690	12	3.2	12	81	3	51	60	0	0	39	0.97
49989860--49989909	22	2.3	22	83	10	59	42	2	12	44	1.53
49989830--49989937	41	2.6	42	77	11	107	50	3	9	36	1.52
49993746--49993782	19	2.0	18	89	5	56	24	24	24	27	2.00
49994135--49994184	24	2.1	24	96	0	91	48	18	18	16	1.82
50023649--50024388	109	7.0	107	87	6	1014	39	15	15	29	1.88
50024583--50025107	100	5.1	100	85	10	697	33	17	14	34	1.90
50033065--50033101	12	2.9	13	84	15	51	51	0	0	48	1.00
50033625--50033669	20	2.1	22	84	8	58	40	22	6	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50036104--50036159	22	2.5	22	83	8	69	46	16	3	33	1.64
50041228--50041285	22	2.7	21	79	10	62	44	17	3	34	1.65
50049946--50049983	18	2.2	18	86	9	53	71	2	5	21	1.19
50051514--50051548	5	7.0	5	96	0	52	34	40	0	25	1.56
50054464--50055052	220	2.7	218	90	4	905	26	15	12	45	1.82
50064034--50064095	29	2.1	29	96	0	115	9	24	14	51	1.72
50064520--50064549	15	2.0	15	93	0	51	36	0	6	56	1.26
50074367--50074427	28	2.2	28	84	0	77	59	1	0	39	1.08
50076823--50076891	29	2.3	29	80	9	77	47	10	14	27	1.76
50078109--50078162	26	2.0	28	85	10	76	62	1	0	35	1.06
50079059--50079111	16	3.3	16	76	10	63	35	24	5	33	1.79
50080279--50080323	17	2.6	17	82	0	54	0	17	6	75	1.01
50084881--50084906	6	4.3	6	100	0	52	30	0	19	50	1.48
50088945--50088986	16	2.6	17	82	17	54	64	2	0	33	1.07
50089679--50089730	27	2.0	26	88	3	77	25	17	11	46	1.81
50095927--50095982	23	2.5	22	78	16	60	71	3	17	7	1.23
50096244--50096278	15	2.3	15	100	0	70	8	20	51	20	1.73
50100566--50100638	35	2.1	35	100	0	146	34	10	12	42	1.78
50102420--50102478	29	2.0	30	86	3	84	28	6	15	49	1.70
50103743--50103783	21	1.9	22	90	5	66	60	2	0	36	1.10
50106426--50106542	41	2.8	42	81	10	143	32	28	19	19	1.96
50106581--50106739	64	2.4	66	83	7	189	42	16	7	33	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50106766--50106890	60	2.1	60	82	5	146	42	15	4	38	1.65
50110863--50110890	10	2.8	10	100	0	56	42	7	0	50	1.30
50114461--50114558	41	2.3	45	85	8	141	32	24	16	26	1.96
50114434--50114582	41	3.5	44	76	14	132	28	27	17	26	1.98
50117302--50117355	19	2.8	21	72	16	53	35	22	3	38	1.72
50118179--50118471	110	2.7	109	89	3	435	34	19	15	31	1.92
50118600--50118639	18	2.2	18	86	8	55	75	5	0	20	0.99
50118958--50118986	14	2.0	15	93	6	51	62	6	0	31	1.22
50119219--50119257	15	2.6	15	83	0	51	58	2	2	35	1.25
50128778--50129361	45	12.8	45	77	6	557	33	16	20	29	1.95
50128778--50129415	141	4.6	138	77	10	606	33	17	19	29	1.95
50128781--50129316	186	2.9	185	84	1	691	33	16	20	29	1.95
50128778--50129402	230	2.7	233	81	6	700	33	17	19	29	1.95
50133244--50133298	22	2.4	22	80	19	60	60	1	5	32	1.30
50133299--50133385	4	22.0	4	68	11	54	70	4	21	3	1.21
50133748--50133831	41	2.0	42	82	11	102	28	17	20	33	1.95
50134090--50134118	14	2.0	15	93	6	51	27	3	20	48	1.66
50148679--50148740	24	2.6	25	78	14	67	17	24	19	38	1.93
50148904--50148951	25	2.0	25	87	4	71	18	25	18	37	1.94
50148778--50148951	26	7.1	24	66	16	72	17	25	20	36	1.95
50152677--50152796	60	2.0	60	100	0	240	38	5	10	46	1.59
50153628--50153661	15	2.3	15	90	10	52	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50153626--50153676	15	3.3	15	81	10	50	37	0	1	60	1.08
50168685--50168868	93	2.0	93	96	0	341	19	17	23	39	1.92
50171043--50171069	13	2.1	13	100	0	54	48	14	14	22	1.81
50173253--50173290	18	2.1	18	100	0	76	26	26	10	36	1.89
50176425--50176466	14	3.2	14	87	9	54	59	14	7	19	1.57
50178357--50178384	12	2.3	12	100	0	56	42	0	0	57	0.99
50179942--50179972	7	4.4	7	100	0	62	16	0	54	29	1.42
50195675--50195731	22	2.8	21	82	10	73	36	21	7	35	1.80
50206644--50206811	38	4.4	38	85	4	221	36	32	17	14	1.90
50206644--50206811	77	2.2	76	86	3	230	36	32	17	14	1.90
50211450--50211627	51	3.5	51	84	2	234	23	17	28	31	1.97
50211449--50211648	102	2.0	101	85	4	269	24	17	27	31	1.97
50211638--50211726	45	2.0	45	90	0	142	25	16	23	33	1.96
50219935--50219969	15	2.2	16	90	5	54	37	0	14	48	1.44
50223280--50223315	13	2.8	13	91	0	54	33	8	2	55	1.44
50223311--50223349	16	2.5	16	83	4	53	46	0	7	46	1.31
50223287--50223428	61	2.3	61	80	4	162	39	4	8	47	1.56
50223652--50223697	7	6.6	7	78	16	51	60	10	0	28	1.30
50223652--50223697	15	3.3	15	82	11	62	60	10	0	28	1.30
50223727--50224536	9	90.4	9	74	11	632	47	17	1	33	1.58
50223736--50223814	17	4.8	16	71	21	56	45	20	2	31	1.64
50224313--50224486	66	2.5	67	79	10	183	45	19	0	35	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50224498--50224543	7	6.0	7	87	9	56	52	17	2	28	1.56
50228194--50228258	21	3.1	21	86	0	85	33	18	44	3	1.65
50228708--50228916	43	4.9	43	87	6	259	24	22	21	31	1.98
50231003--50231058	23	2.4	24	79	8	71	58	0	1	39	1.08
50236156--50236184	13	2.2	13	100	0	58	37	24	0	37	1.56
50236381--50236459	28	2.8	28	92	1	131	65	0	2	31	1.06
50236367--50236444	37	2.0	40	87	7	117	65	0	3	30	1.10
50236381--50236468	28	3.2	27	87	7	124	67	0	4	28	1.11
50236381--50236468	29	3.2	26	81	12	104	67	0	4	28	1.11
50237358--50237402	24	1.9	23	82	13	56	48	24	6	20	1.73
50239674--50239751	27	3.0	26	79	7	86	37	7	6	48	1.57
50240879--50240905	6	4.5	6	100	0	54	14	14	14	55	1.70
50253215--50253292	27	3.0	26	75	14	79	37	7	5	50	1.54
50254299--50254531	101	2.3	101	91	2	378	29	23	15	31	1.95
50258546--50258611	29	2.4	27	74	20	64	21	12	7	59	1.57
50258796--50258887	24	3.7	23	73	21	71	32	3	0	64	1.10
50258795--50258877	35	2.4	35	84	9	100	32	3	0	63	1.11
50258832--50258877	17	2.7	17	86	10	67	34	4	0	60	1.16
50258797--50258893	52	1.9	50	85	12	135	32	3	0	63	1.10
50258797--50258900	16	6.2	16	75	18	79	32	2	0	63	1.16
50258832--50258891	7	7.7	7	76	20	57	35	3	0	61	1.12
50258832--50258900	17	4.2	17	78	17	65	34	2	1	60	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50291817--50291849	17	1.9	18	88	11	52	48	0	9	42	1.35
50293137--50293286	41	3.6	41	96	0	264	23	28	20	28	1.99
50295181--50295222	19	2.2	20	86	4	59	42	11	4	40	1.63
50300932--50300995	25	2.6	25	78	11	69	21	14	17	46	1.83
50310754--50310797	17	2.6	17	89	7	63	34	6	20	38	1.79
50313962--50314051	38	2.2	40	82	11	121	54	6	2	36	1.39
50314156--50314200	20	2.4	18	80	16	56	46	4	0	48	1.22
50314548--50314651	52	2.0	52	100	0	208	40	19	11	28	1.86
50314700--50314744	23	2.0	23	95	0	81	35	28	8	26	1.87
50321510--50321534	2	12.5	2	100	0	50	48	0	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214