Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  206  of  214  ( 25680 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60460725--60460767
22
2.0
22
86
9
61
16
25
18
39
1.91
60463728--60463799
21
3.4
21
69
7
65
44
15
26
13
1.84
60463714--60463815
42
2.4
42
81
0
132
41
16
26
15
1.88
60472750--60472799
18
2.7
19
72
12
59
28
2
2
68
1.12
60473657--60473706
22
2.4
21
87
12
68
24
8
0
68
1.16
60473657--60473712
21
2.7
20
84
13
69
23
10
0
66
1.23
60483530--60483614
33
2.6
33
92
5
138
68
4
17
9
1.35
60483831--60484351
257
2.0
257
99
0
1033
40
7
18
33
1.79
60484518--60484563
5
9.2
5
100
0
92
39
0
0
60
0.97
60509209--60509264
5
10.8
5
84
7
76
41
0
0
58
0.98
60509212--60509269
8
7.0
8
77
14
64
41
0
0
58
0.98
60509209--60509273
21
3.0
21
97
2
121
41
0
0
58
0.98
60509522--60509553
12
2.6
13
85
14
50
34
0
25
40
1.56
60510051--60510083
11
3.1
11
82
8
50
78
0
3
18
0.87
60510384--60510441
25
2.3
25
88
5
82
15
24
22
37
1.93
60510945--60511012
16
4.2
16
92
0
118
27
0
36
35
1.58
60511240--60511379
17
8.6
17
65
23
61
52
0
1
45
1.14
60511277--60511325
24
2.1
22
85
14
64
55
0
2
42
1.11
60511296--60511351
15
4.0
15
73
17
57
55
0
0
44
0.99
60511306--60511368
26
2.5
25
82
10
83
58
1
0
39
1.07
60511219--60511489
108
2.7
99
80
12
259
51
3
1
43
1.27
60516990--60517049
26
2.3
26
85
0
84
40
21
20
18
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60517341--60517380
22
2.0
20
85
14
55
50
15
0
35
1.44
60519615--60519654
21
2.0
20
85
5
53
47
2
22
27
1.64
60523757--60523802
17
2.6
17
86
13
58
21
4
4
69
1.24
60529066--60529099
17
2.0
17
94
0
59
44
50
0
5
1.26
60533706--60533739
17
2.0
17
94
0
59
44
50
0
5
1.26
60536107--60536647
92
5.9
91
73
10
282
28
7
14
49
1.71
60536707--60536886
80
2.2
81
82
6
224
23
10
15
50
1.74
60557904--60557944
21
2.0
21
85
0
55
63
9
0
26
1.25
60562354--60562437
30
2.8
30
80
10
100
22
14
9
53
1.69
60562387--60562457
31
2.3
31
85
7
92
22
11
9
56
1.64
60563784--60563812
14
2.0
15
93
6
51
41
0
0
58
0.98
60566348--60566381
17
1.9
18
88
5
52
38
2
2
55
1.30
60572334--60572366
17
2.1
17
88
11
52
42
0
3
54
1.15
60586640--60586707
30
2.3
30
87
5
93
48
5
0
45
1.26
60587002--60587056
23
2.5
22
77
14
67
40
0
16
43
1.48
60587206--60587247
19
2.2
19
83
8
50
52
7
2
38
1.42
60593383--60593421
21
2.0
19
85
14
53
15
5
17
61
1.51
60593477--60593518
20
2.0
22
82
13
54
50
0
0
50
1.00
60598495--60598548
28
1.9
28
85
7
74
38
3
1
55
1.28
60604190--60604228
20
2.0
20
84
0
51
66
0
5
28
1.12
60628464--60629384
341
2.7
341
91
1
1478
26
22
18
32
1.97
60635759--60636013
127
2.0
127
96
0
474
36
17
9
37
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60636604--60636662
26
2.3
26
96
0
109
32
10
8
49
1.67
60638269--60638315
18
2.7
18
77
6
53
65
4
17
12
1.40
60647218--60647256
21
1.9
20
94
5
69
33
7
30
28
1.85
60653972--60654028
26
2.2
26
87
3
80
63
12
1
22
1.38
60657220--60657266
19
2.5
20
79
10
62
63
4
0
31
1.13
60657347--60657393
23
2.0
23
95
0
85
29
17
23
29
1.97
60657590--60657624
17
2.0
18
88
5
54
14
0
8
77
0.99
60659450--60659508
20
2.7
21
79
12
57
20
5
3
71
1.20
60659551--60659633
22
3.7
23
80
7
98
38
7
0
54
1.28
60659551--60659703
25
6.5
24
76
8
118
34
6
3
55
1.42
60659940--60659985
24
1.9
24
90
0
74
30
8
2
58
1.40
60668784--60668842
24
2.5
24
86
5
84
11
35
23
28
1.91
60668968--60669042
21
3.4
21
71
16
62
17
20
21
41
1.90
60668945--60669072
45
2.8
45
79
2
132
16
25
17
40
1.90
60669859--60669933
21
3.4
21
71
16
62
17
20
21
41
1.90
60669836--60669963
45
2.8
45
78
2
132
16
26
17
39
1.90
60668880--60672452
891
4.0
892
98
0
6925
26
21
19
32
1.97
60670763--60670825
21
2.9
21
69
19
56
17
22
19
41
1.90
60670727--60670849
45
2.7
45
81
2
122
16
25
19
39
1.92
60671643--60671717
21
3.4
21
71
16
62
17
20
21
41
1.90
60671620--60671747
45
2.8
45
79
2
132
16
25
17
40
1.90
60677656--60677822
81
2.1
81
98
0
325
47
17
10
23
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60682066--60682138
39
1.9
38
88
5
112
35
1
0
63
1.04
60682249--60682660
178
2.3
177
96
1
761
31
26
9
33
1.88
60689575--60689620
21
2.3
21
75
10
53
43
0
2
54
1.12
60690554--60690594
16
2.6
16
96
0
73
48
2
0
48
1.14
60704948--60704980
3
11.0
3
87
12
50
69
0
30
0
0.88
60706775--60706832
27
2.1
27
84
6
73
39
1
0
58
1.08
60711161--60711250
46
2.0
46
100
0
180
30
17
8
43
1.80
60720224--60720266
16
2.7
16
82
7
52
41
0
4
53
1.21
60721206--60721313
38
2.8
39
92
2
182
60
0
2
37
1.12
60722714--60722768
29
1.9
29
82
10
69
43
3
14
38
1.63
60729117--60729166
25
2.0
24
84
3
64
42
2
4
52
1.31
60735262--60735503
108
2.2
108
85
1
324
17
18
19
44
1.87
60735562--60735647
36
2.4
35
84
9
111
13
22
24
39
1.90
60735647--60735742
36
2.7
36
96
0
174
12
18
21
46
1.82
60738281--60738306
6
4.3
6
100
0
52
19
34
30
15
1.93
60743914--60744008
47
2.0
47
97
0
181
33
18
22
25
1.97
60752464--60752501
17
2.2
18
85
4
51
26
0
7
65
1.19
60752498--60752557
27
2.2
28
82
14
72
40
0
3
56
1.16
60752492--60752557
28
2.3
29
80
15
75
39
0
3
57
1.14
60768540--60768580
20
2.0
20
85
4
55
43
4
0
51
1.23
60768674--60768718
19
2.3
19
84
7
54
31
4
6
57
1.44
60775571--60775601
9
3.4
9
90
0
53
25
12
22
38
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60775654--60775681
9
3.1
9
100
0
56
46
10
10
32
1.73
60779910--60779957
19
2.6
19
78
15
64
47
2
0
50
1.12
60784507--60784541
16
2.2
16
100
0
70
45
5
17
31
1.71
60789249--60789471
119
1.9
120
82
6
283
25
27
22
24
2.00
60789247--60789471
40
5.7
40
83
6
269
25
27
22
24
2.00
60797148--60797363
119
1.8
120
83
7
287
25
26
21
25
2.00
60797146--60797370
40
5.7
40
83
6
269
25
27
22
24
2.00
60800321--60800366
17
2.8
18
84
15
64
28
41
30
0
1.56
60802920--60802956
9
4.1
9
92
0
65
45
13
10
29
1.77
60803159--60803199
19
2.1
20
82
13
50
26
31
0
41
1.56
60820538--60820862
160
2.0
160
100
0
650
38
13
23
24
1.91
60834801--60834834
18
1.9
17
88
5
50
64
2
0
32
1.08
60834922--60834982
16
3.7
16
76
6
50
57
0
4
37
1.20
60836036--60836118
40
2.0
42
88
6
125
59
2
16
21
1.49
60838940--60839016
39
2.0
39
84
5
102
40
16
23
19
1.91
60844707--60844748
15
2.9
15
82
10
52
47
0
0
52
1.00
60844884--60844986
44
2.5
40
75
15
109
32
29
4
33
1.79
60844972--60845023
16
3.2
16
97
0
95
34
36
0
28
1.58
60848681--60848719
20
2.0
20
94
0
69
74
5
10
10
1.21
60848652--60848719
31
2.1
33
86
5
95
73
5
10
10
1.24
60850085--60850135
3
17.0
3
100
0
102
66
0
0
33
0.92
60861305--60861364
22
2.7
23
73
19
63
66
6
0
26
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60861314--60861347
4
8.0
4
90
9
50
73
2
0
23
0.97
60862702--60862753
23
2.3
22
75
21
54
9
23
1
65
1.32
60862747--60862785
18
2.2
18
85
0
51
12
23
2
61
1.43
60865113--60865172
22
2.7
23
73
19
63
66
6
0
26
1.16
60865122--60865155
4
8.0
4
90
9
50
73
2
0
23
0.97
60883472--60883526
9
5.9
9
77
8
56
34
0
3
61
1.13
60883470--60883529
28
2.1
28
96
0
111
35
0
6
58
1.24
60883941--60884056
56
2.0
59
93
5
202
29
24
12
34
1.91
60885863--60886030
27
6.2
27
85
5
207
35
22
23
19
1.96
60885863--60886030
81
2.1
81
90
2
266
35
22
23
19
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214