genome.fa.s25.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  111  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33532887--33532933	20	2.3	20	81	0	58	29	34	12	23	1.92
33538917--33538951	18	1.9	18	88	11	54	22	20	0	57	1.41
33543170--33543211	18	2.2	19	83	8	50	14	7	7	71	1.29
33544645--33544712	21	3.2	20	85	10	82	4	11	2	80	0.96
33544645--33544712	22	3.2	21	81	10	84	4	11	2	80	0.96
33547353--33547563	40	5.3	41	81	6	256	24	20	27	27	1.99
33547353--33547563	79	2.7	79	90	2	334	24	20	27	27	1.99
33551870--33552054	40	4.7	40	81	6	207	25	23	26	24	2.00
33553589--33553745	79	2.0	80	82	8	196	24	26	22	26	2.00
33553561--33553745	40	4.7	40	81	8	182	25	27	21	25	2.00
33556684--33556855	79	2.2	79	84	3	220	25	21	27	25	1.99
33556631--33556853	40	5.6	39	81	8	209	25	21	27	25	1.99
33556711--33556888	79	2.2	80	80	3	191	25	21	28	24	1.99
33562968--33563110	40	3.6	39	84	2	160	24	21	27	26	1.99
33570911--33571090	39	4.6	40	81	7	199	25	27	21	25	2.00
33570911--33571090	79	2.3	80	80	8	199	25	27	21	25	2.00
33577805--33577854	18	2.5	20	87	9	68	72	4	20	4	1.18
33583043--33583097	20	2.8	20	88	0	83	25	29	16	29	1.97
33585689--33585743	20	2.8	20	88	0	83	29	16	29	25	1.97
33586594--33596591	557	18.0	558	93	0	16816	35	16	17	30	1.92
33618044--33618070	14	1.9	14	100	0	54	22	7	25	44	1.79
33620900--33620930	15	2.1	15	93	0	53	22	32	19	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33622275--33622348	37	2.0	37	100	0	148	54	18	10	16	1.71
33630574--33630877	40	7.7	40	90	4	440	25	21	27	25	2.00
33638646--33638988	40	8.6	40	91	4	502	25	21	27	25	1.99
33638646--33638988	79	4.3	80	90	5	486	25	21	27	25	1.99
33658077--33658156	22	3.6	22	79	0	88	40	46	1	12	1.50
33658072--33658156	11	7.7	11	72	15	68	41	45	1	11	1.48
33666343--33666433	35	2.6	35	82	0	110	37	14	18	29	1.90
33667845--33667871	4	6.8	4	100	0	54	74	0	0	25	0.83
33669761--33669807	24	1.9	25	83	12	62	42	8	8	40	1.66
33669850--33669907	29	2.0	29	89	0	89	34	12	15	37	1.85
33670646--33670771	35	3.6	35	82	4	130	39	15	16	28	1.89
33672813--33672937	48	2.6	48	83	7	150	21	16	22	40	1.91
33674135--33674171	15	2.6	15	87	8	51	64	21	13	0	1.27
33675854--33676052	106	1.9	106	91	0	326	31	19	16	32	1.94
33678239--33678343	53	2.0	54	88	9	162	40	20	19	19	1.91
33678231--33678430	27	7.4	27	75	5	147	37	20	20	22	1.95
33678235--33678430	80	2.4	81	79	5	193	36	20	19	22	1.95
33678294--33678446	54	2.9	53	77	9	143	32	20	22	24	1.98
33678470--33678536	23	2.9	23	79	2	71	19	5	25	49	1.71
33678634--33678686	27	2.0	27	81	7	63	22	26	20	30	1.98
33678727--33678899	32	5.4	32	79	8	149	17	19	24	38	1.93
33678727--33678899	64	2.7	63	77	7	188	17	19	24	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33678724--33678915	96	2.0	96	79	8	203	19	19	22	38	1.93
33688863--33688900	20	2.0	20	89	5	60	47	10	13	28	1.76
33689903--33690065	74	2.2	73	85	7	215	25	33	0	39	1.61
33689956--33690004	19	2.5	19	86	3	62	24	28	0	46	1.53
33692675--33692705	16	1.9	16	100	0	62	29	0	6	64	1.18
33697947--33698208	39	6.7	40	87	8	337	24	27	22	25	2.00
33705972--33706194	79	2.8	78	82	9	265	24	27	22	25	2.00
33705972--33706194	39	5.7	40	86	8	266	24	27	22	25	2.00
33720516--33720545	11	2.7	11	94	0	51	30	0	0	70	0.88
33751978--33752026	17	2.8	17	84	9	71	44	0	0	55	0.99
33751978--33752028	12	4.2	12	75	9	59	45	0	0	54	0.99
33752000--33752117	61	2.0	58	88	5	173	43	2	4	50	1.35
33752004--33752139	58	2.3	60	83	8	163	44	2	5	47	1.40
33761131--33761721	291	2.0	291	99	0	1173	27	13	22	36	1.92
33764540--33764596	30	1.9	30	85	7	80	24	22	28	24	2.00
33766025--33766049	13	1.9	13	100	0	50	40	8	20	32	1.81
33782603--33782642	17	2.4	17	86	0	53	35	32	17	15	1.91
33787955--33788012	5	11.6	5	79	0	62	24	36	1	37	1.66
33787955--33788012	15	3.9	15	93	0	80	24	36	1	37	1.66
33793438--33793463	6	4.3	6	100	0	52	0	30	0	69	0.89
33799457--33799603	74	2.0	74	84	0	195	33	20	14	31	1.92
33809492--33809570	33	2.4	33	87	4	106	21	24	10	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33812453--33812524	27	2.7	27	82	10	85	40	18	19	22	1.92
33812791--33812865	32	2.3	32	81	0	87	24	18	21	36	1.95
33812853--33812935	32	2.6	33	76	5	89	15	16	26	40	1.89
33812953--33813017	22	3.0	21	77	4	67	16	21	18	43	1.88
33827341--33827391	26	2.0	26	84	0	66	35	23	23	17	1.95
33827352--33827408	26	2.2	26	84	6	71	33	26	24	15	1.95
33827856--33827895	5	7.8	5	83	5	53	42	17	0	40	1.49
33839147--33839182	15	2.2	17	90	9	58	5	27	0	66	1.13
33839744--33839791	17	2.9	17	93	3	80	27	0	20	52	1.47
33841010--33841194	46	4.0	46	92	1	291	35	9	25	29	1.87
33845546--33845741	48	4.1	48	91	0	248	25	28	19	27	1.99
33845593--33845757	48	3.4	48	94	0	276	23	27	21	27	1.99
33854137--33854180	6	7.3	6	100	0	88	36	47	0	15	1.46
33854586--33854653	21	3.2	21	70	0	73	27	13	35	23	1.92
33854586--33854674	42	2.1	42	95	0	160	26	16	34	21	1.95
33854586--33854698	42	2.7	42	88	2	138	26	16	35	21	1.95
33854667--33854736	21	3.4	19	73	15	50	22	20	37	20	1.95
33859098--33859132	12	2.9	12	82	0	52	51	31	0	17	1.45
33862085--33862119	14	2.4	15	90	4	54	0	14	2	82	0.77
33869537--33869704	46	3.7	46	75	6	142	29	22	18	29	1.97
33869537--33869714	92	1.9	92	81	2	214	29	23	18	28	1.98
33874007--33874037	9	3.4	9	90	0	53	25	12	22	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33874167--33874227	30	2.0	31	90	3	97	19	44	0	36	1.51
33883895--33883949	27	2.0	27	82	10	67	47	1	9	41	1.46
33885329--33885367	19	2.1	19	100	0	78	25	28	25	20	1.99
33887100--33887132	17	2.0	17	88	5	50	24	30	0	45	1.53
33887515--33887548	4	8.8	4	87	6	52	73	0	26	0	0.83
33888657--33888704	19	2.6	18	83	9	60	54	0	22	22	1.45
33898163--33898300	48	2.8	48	76	6	125	27	15	22	34	1.95
33898187--33898300	48	2.3	49	84	3	140	26	17	23	32	1.97
33907629--33907654	10	2.6	10	100	0	52	23	7	0	69	1.14
33907895--33907977	37	2.2	37	100	0	166	32	24	0	43	1.54
33907992--33908035	23	1.9	22	82	17	54	36	25	0	38	1.56
33908134--33908320	51	3.7	49	78	7	205	31	27	16	25	1.97
33908130--33908316	101	1.8	101	88	3	286	31	27	16	24	1.96
33910291--33910336	23	2.0	24	86	4	67	50	4	6	39	1.48
33920609--33920675	33	2.0	33	82	5	82	50	8	11	28	1.69
33920912--33920950	14	2.8	14	80	0	51	51	0	5	43	1.24
33920923--33920991	28	2.6	28	72	25	69	50	0	1	47	1.09
33923645--33923869	43	5.3	43	86	0	290	25	28	17	28	1.97
33924210--33924258	21	2.3	21	86	6	64	10	38	16	34	1.82
33924224--33924385	87	1.9	87	88	2	245	14	27	17	40	1.88
33926146--33926183	19	2.0	19	89	0	58	44	2	15	36	1.61
33926185--33926228	20	2.2	20	95	0	79	38	6	2	52	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33926205--33926298	32	2.7	37	83	16	153	38	3	7	51	1.46
33926590--33926678	30	3.0	30	72	6	81	43	5	8	41	1.59
33930371--33930399	14	2.0	15	93	6	51	34	31	6	27	1.83
33931040--33931371	114	2.9	111	83	7	400	28	23	22	25	2.00
33931358--33931452	40	2.4	40	81	6	106	20	22	22	35	1.96
33934351--33934427	29	2.7	29	93	4	129	20	33	6	38	1.79
33940665--33940792	41	3.2	40	91	4	211	30	26	20	22	1.98
33943857--33943888	16	2.0	16	100	0	64	43	12	6	37	1.68
33961665--33961791	27	4.7	27	81	3	112	33	14	24	28	1.94
33967502--33967539	3	12.7	3	83	10	51	5	28	0	65	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214