genome.fa.s25.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  124  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37748973--37749163	49	3.9	48	80	6	186	31	24	16	26	1.96
37748978--37749163	101	1.9	100	85	5	259	32	24	16	26	1.96
37756633--37756815	51	3.6	51	88	2	235	30	26	16	26	1.97
37761840--37761868	14	2.0	15	93	6	51	44	0	20	34	1.52
37767013--37767287	27	10.3	27	78	13	250	43	16	16	24	1.87
37767013--37767287	54	5.2	53	83	6	276	43	16	16	24	1.87
37767013--37767291	133	2.1	132	84	5	375	43	16	16	24	1.88
37767134--37767316	27	6.8	26	86	5	109	42	18	16	22	1.89
37767243--37767316	26	2.8	26	85	6	87	40	17	16	25	1.90
37769900--37769949	26	1.9	26	83	0	64	22	20	18	40	1.92
37770044--37770096	28	1.9	27	88	3	79	24	26	22	26	2.00
37777097--37777149	23	2.4	22	76	20	56	9	18	1	69	1.25
37781732--37782087	27	13.2	27	84	5	411	43	17	17	21	1.88
37786121--37786158	19	2.0	19	85	10	51	57	0	2	39	1.12
37793190--37793480	44	6.7	44	68	15	158	27	24	20	27	1.99
37793593--37793924	44	7.7	44	72	12	208	28	21	20	29	1.98
37793446--37793727	141	2.0	141	90	1	449	27	21	20	30	1.98
37793229--37793923	358	1.9	358	90	1	1106	28	22	20	28	1.99
37806693--37806735	22	2.0	22	86	9	61	76	6	0	16	0.99
37814605--37814829	40	5.7	40	82	6	233	25	27	21	26	1.99
37814761--37814838	40	1.9	41	82	10	97	26	28	20	24	1.99
37831971--37832195	40	5.7	40	83	6	242	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37832127--37832204	40	1.9	41	82	10	97	26	28	20	24	1.99
37846089--37846131	21	2.0	21	86	0	59	34	6	37	20	1.80
37858837--37858912	24	3.1	22	73	17	62	25	22	21	31	1.98
37858837--37858983	49	3.0	49	84	2	197	23	21	22	32	1.98
37858841--37858977	25	5.6	25	74	10	122	22	22	22	32	1.98
37863993--37864032	20	2.0	20	90	0	62	47	12	2	37	1.55
37866357--37866508	42	3.6	43	83	6	193	34	27	17	20	1.95
37866478--37866530	26	2.0	26	81	0	61	30	30	20	18	1.97
37866485--37866537	26	2.0	26	88	0	79	24	33	22	18	1.97
37866756--37866787	16	2.0	16	93	0	55	43	9	6	40	1.62
37874968--37874999	15	2.1	15	100	0	64	46	12	0	40	1.42
37880184--37880290	26	4.1	26	77	0	115	35	24	20	19	1.96
37880499--37880813	80	3.9	80	82	5	359	22	14	18	44	1.86
37880485--37880815	54	6.2	53	81	7	366	21	16	17	44	1.87
37880485--37880815	27	12.3	27	78	8	318	21	16	17	44	1.87
37887150--37887202	24	2.3	23	81	9	63	49	13	3	33	1.60
37887822--37887876	28	2.0	28	88	0	83	36	20	21	21	1.95
37887981--37888080	52	1.9	52	82	8	123	39	26	16	19	1.91
37888285--37888561	27	10.3	27	82	2	299	22	17	18	41	1.90
37888287--37888562	107	2.6	107	84	2	322	22	17	18	41	1.90
37894163--37894201	19	2.1	19	95	0	69	46	12	0	41	1.42
37895263--37895415	35	4.4	35	76	4	130	28	16	16	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37899754--37899810	26	2.2	26	93	0	96	43	10	10	35	1.74
37909636--37909682	21	2.2	22	92	3	78	21	19	38	21	1.94
37931138--37931180	13	3.3	14	90	9	65	0	18	0	81	0.69
37934744--37934801	19	3.1	18	76	18	55	6	15	6	70	1.30
37935941--37935982	8	5.2	8	85	0	57	80	2	2	14	0.90
37935947--37935989	16	2.6	16	79	20	52	83	2	2	11	0.83
37937942--37938007	29	2.3	29	97	0	123	36	16	18	28	1.93
37939551--37939601	22	2.3	22	86	0	84	66	0	23	9	1.21
37947158--37947214	28	2.0	28	93	0	96	33	24	19	22	1.97
37947324--37947396	26	2.8	26	87	0	101	36	19	26	17	1.94
37947576--37947731	53	2.9	54	91	1	242	23	16	17	42	1.89
37947576--37947731	27	5.8	27	87	1	206	23	16	17	42	1.89
37951131--37951200	26	2.7	26	80	4	88	24	20	30	25	1.99
37952910--37952940	16	1.9	16	93	0	53	35	12	0	51	1.40
37966906--37966935	13	2.3	13	100	0	60	6	6	23	63	1.43
37977181--37977248	29	2.3	29	82	5	84	27	29	13	29	1.94
37977070--37977397	174	1.9	174	98	0	629	30	24	14	30	1.95
37977359--37977428	29	2.4	30	81	13	92	30	28	12	28	1.93
37985329--37985396	29	2.3	29	82	5	84	27	29	13	29	1.94
37985218--37985545	174	1.9	174	98	0	638	31	24	14	30	1.94
37985505--37985576	29	2.5	30	82	13	96	30	29	12	27	1.93
37992836--37992863	14	2.0	14	100	0	56	28	7	0	64	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37993311--37993348	19	2.0	19	85	10	51	21	42	0	36	1.53
38012183--38012257	20	3.8	20	70	0	69	29	21	36	13	1.91
38012195--38012291	40	2.4	40	81	3	97	26	20	36	16	1.94
38012421--38012445	13	1.9	13	100	0	50	24	24	0	52	1.48
38031447--38031526	32	2.6	29	84	11	90	30	3	1	65	1.18
38031425--38031499	11	7.1	11	78	19	88	38	1	1	58	1.15
38031420--38031524	41	2.5	41	77	13	133	32	2	0	63	1.15
38031427--38031526	11	9.5	11	70	25	56	33	3	1	63	1.17
38032240--38032301	11	5.6	11	73	7	54	29	53	6	11	1.61
38032229--38032301	22	3.3	22	82	0	83	28	53	5	12	1.60
38034882--38034929	25	2.0	24	84	12	62	41	22	20	14	1.89
38034892--38034960	24	2.8	24	84	6	77	39	21	21	17	1.93
38034909--38034986	24	3.2	24	85	1	84	38	17	25	17	1.92
38042371--38042464	24	3.9	24	87	1	107	40	20	24	14	1.90
38042501--38042556	26	2.2	26	87	6	78	35	17	28	17	1.93
38046967--38047012	21	2.3	20	78	14	51	45	17	6	30	1.73
38047915--38047951	18	1.9	19	89	10	58	40	0	2	56	1.13
38051473--38051533	27	2.3	27	91	5	97	40	16	19	22	1.90
38051602--38051647	24	1.9	24	86	0	65	32	6	19	41	1.77
38051614--38051677	24	2.6	25	90	4	96	25	7	23	43	1.80
38051764--38051818	27	2.0	27	83	13	69	20	27	23	29	1.99
38051806--38051859	26	2.1	26	89	0	81	14	18	29	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38051874--38052048	32	5.5	32	83	5	212	24	20	18	36	1.95
38051867--38052048	64	2.9	62	87	4	256	24	20	19	36	1.95
38051867--38052062	63	3.1	63	82	6	236	23	19	19	37	1.94
38062017--38062183	54	3.1	54	86	4	214	25	25	11	37	1.90
38065128--38065270	43	3.4	42	86	4	180	28	14	26	30	1.95
38072602--38072634	17	1.9	17	88	11	50	24	33	6	36	1.80
38074979--38075304	161	2.0	162	96	0	600	32	19	18	29	1.96
38080855--38080950	35	2.7	35	76	6	104	27	16	16	39	1.90
38083913--38083946	10	3.4	10	100	0	68	17	0	26	55	1.42
38083910--38083957	20	2.4	21	79	10	64	20	0	22	56	1.43
38085971--38086036	32	2.1	32	100	0	132	30	18	16	34	1.93
38089641--38089677	18	2.0	19	85	15	51	43	16	5	35	1.71
38090346--38090392	18	2.6	19	75	18	55	40	19	4	36	1.71
38092469--38092642	37	4.7	37	87	5	244	17	12	27	42	1.85
38094294--38094416	26	4.9	25	78	4	88	17	26	22	34	1.96
38102040--38102112	26	2.8	26	73	17	71	17	19	21	41	1.91
38104806--38104942	36	3.8	36	88	0	193	25	16	15	43	1.86
38105005--38105104	49	2.0	49	82	0	119	23	19	18	40	1.92
38106218--38106545	107	3.1	106	91	0	523	32	17	17	32	1.93
38108662--38108762	44	2.3	44	82	0	121	28	20	23	26	1.99
38108738--38109028	85	3.4	85	85	6	374	28	21	20	29	1.98
38108779--38109120	44	7.9	44	71	10	229	28	21	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38108778--38109067	88	3.3	88	89	2	390	27	22	19	30	1.98
38120411--38120798	106	3.9	94	78	11	305	33	18	17	31	1.94
38120505--38120803	106	2.8	106	91	0	472	32	18	17	31	1.95
38122851--38122914	16	4.2	16	71	18	64	45	12	14	28	1.81
38123759--38123807	25	2.0	25	96	4	91	44	8	28	18	1.78
38127844--38127910	33	2.0	33	100	0	134	17	14	40	26	1.89
38131584--38131647	26	2.5	26	78	0	83	35	10	17	35	1.85
38136863--38137047	101	1.8	101	86	8	268	23	16	28	31	1.96
38136859--38137054	51	3.9	51	78	5	202	23	16	29	30	1.96
38144975--38145033	25	2.4	25	85	0	82	30	16	20	32	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214