genome.fa.s25.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  137  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41533981--41534054	31	2.4	31	76	14	82	52	4	0	43	1.20
41535097--41535138	21	2.0	23	86	13	63	30	7	2	59	1.37
41535480--41535529	25	2.0	25	84	0	64	50	2	2	46	1.24
41537788--41537856	36	1.9	35	82	8	86	55	0	8	36	1.31
41544139--41544187	24	2.0	25	84	4	64	28	22	2	46	1.63
41545476--41545515	18	2.3	18	87	8	57	27	2	7	62	1.35
41547818--41547890	37	2.0	37	97	0	137	34	24	9	31	1.88
41547818--41547910	37	2.4	37	89	5	132	35	25	8	30	1.86
41548255--41548293	11	3.5	11	82	0	51	25	12	2	58	1.47
41551012--41551038	13	2.1	13	100	0	54	37	14	7	40	1.74
41555088--41555375	142	2.0	140	90	2	452	34	10	20	34	1.87
41566607--41566778	24	6.9	26	69	12	76	35	21	23	19	1.96
41571837--41571886	26	1.9	26	100	0	100	72	4	10	14	1.26
41574318--41574436	38	3.1	39	76	4	116	24	13	21	41	1.89
41575595--41575636	21	2.0	21	85	0	57	33	4	19	42	1.72
41576380--41576445	26	2.5	26	83	7	80	19	24	19	36	1.95
41584661--41585155	46	11.3	44	81	13	420	36	14	21	27	1.93
41584595--41585044	98	4.7	98	79	12	560	35	14	21	28	1.93
41584827--41584900	37	2.0	37	97	0	139	39	16	20	24	1.92
41584682--41585081	181	2.2	181	98	0	764	36	15	21	27	1.93
41584595--41585136	135	4.1	132	78	16	418	35	15	21	27	1.93
41585008--41585136	37	3.5	37	97	0	240	37	17	19	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41593773--41593904	41	3.2	41	92	0	210	29	18	24	27	1.98
41594349--41594380	9	3.4	10	83	16	50	40	9	9	40	1.70
41599464--41599503	4	10.0	4	100	0	80	50	25	0	25	1.50
41606519--41606706	90	2.1	90	86	0	268	27	23	18	30	1.97
41606613--41607336	44	16.5	44	65	21	225	28	25	16	29	1.97
41606613--41607340	132	5.5	132	92	0	1213	28	25	16	29	1.97
41607343--41608060	89	8.1	89	87	0	1015	22	22	25	29	1.99
41619267--41619304	13	2.8	14	80	19	53	65	5	7	21	1.38
41619392--41619418	14	1.9	14	100	0	54	81	0	7	11	0.87
41620569--41620647	38	2.1	38	97	0	149	22	5	11	60	1.50
41621516--41621627	44	2.5	44	80	8	129	30	16	19	33	1.95
41621826--41622009	100	1.8	100	84	2	253	26	23	21	28	1.99
41621819--41622042	100	2.2	100	78	3	243	27	23	21	27	1.99
41621642--41622446	267	3.0	265	89	1	1200	26	25	20	28	1.99
41622099--41622277	50	3.6	50	71	4	128	25	24	20	29	1.99
41623789--41623829	13	3.2	13	85	0	55	4	14	0	80	0.87
41623795--41623836	18	2.2	20	87	8	61	7	9	0	83	0.81
41624639--41624704	25	2.6	25	88	9	89	59	4	15	21	1.54
41630176--41630213	13	2.8	14	80	19	53	65	5	7	21	1.38
41632238--41632271	4	8.0	4	90	9	50	23	0	2	73	0.97
41632221--41632280	22	2.7	22	73	19	61	26	0	6	66	1.16
41634605--41634643	18	2.2	18	85	0	51	61	2	23	12	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41636041--41636074	4	8.0	4	90	9	50	23	0	2	73	0.97
41636024--41636083	22	2.7	22	73	19	61	26	0	6	66	1.16
41637197--41637247	23	2.2	23	82	0	57	62	3	0	33	1.13
41639015--41639066	25	2.1	24	89	3	77	61	11	13	13	1.57
41642930--41642958	14	2.1	14	100	0	58	37	0	20	41	1.53
41648723--41648760	16	2.5	15	83	8	51	28	0	0	71	0.87
41655205--41655243	20	2.0	20	89	0	60	48	12	10	28	1.74
41655227--41655266	14	2.9	14	84	0	53	42	17	7	32	1.77
41656685--41656833	57	2.5	59	82	12	189	31	21	24	22	1.98
41658391--41658445	19	2.8	19	81	13	67	25	5	7	61	1.44
41658392--41658453	19	3.2	19	78	15	65	27	4	6	61	1.41
41661463--41661883	46	9.3	45	81	14	460	36	14	21	27	1.93
41661397--41661846	98	4.7	98	80	12	569	35	14	21	27	1.93
41661629--41661702	37	2.0	37	97	0	139	39	16	20	24	1.92
41661484--41661883	181	2.2	181	98	0	773	36	15	21	27	1.93
41661397--41661938	135	4.1	132	77	16	409	35	15	21	27	1.93
41661810--41661938	37	3.5	37	96	0	231	37	17	18	26	1.93
41663208--41663375	58	3.0	58	87	10	237	22	13	30	33	1.92
41663227--41663317	28	3.2	28	66	22	80	25	15	31	27	1.95
41663268--41663410	49	2.9	49	93	0	232	23	13	30	32	1.94
41666601--41667017	46	9.2	45	81	14	452	36	15	20	27	1.93
41666535--41666984	98	4.7	98	80	12	569	35	14	21	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41666767--41666840	37	2.0	37	97	0	139	39	16	20	24	1.92
41666622--41667017	181	2.2	181	98	0	765	36	15	20	27	1.93
41666720--41667017	83	3.4	83	73	16	289	37	15	20	26	1.92
41666535--41667004	135	3.4	132	80	14	406	35	15	21	27	1.94
41666948--41667053	37	2.9	37	90	2	171	36	16	21	24	1.94
41673468--41673510	18	2.5	17	80	3	50	30	4	2	62	1.28
41675037--41675071	17	2.1	17	100	0	70	34	11	14	40	1.82
41680360--41681271	50	18.3	51	70	4	581	28	22	24	23	1.99
41680363--41681279	100	9.2	100	87	2	1186	28	22	24	23	1.99
41682667--41682701	4	8.5	4	90	3	52	25	0	2	71	1.00
41682868--41682910	18	2.5	17	80	3	50	30	4	2	62	1.28
41684298--41684412	44	2.6	44	85	2	149	35	13	22	27	1.92
41684298--41684431	46	3.0	45	82	4	153	35	14	23	26	1.93
41689880--41689994	44	2.6	44	85	2	149	35	13	22	27	1.92
41689880--41690013	46	3.0	45	82	4	153	35	14	23	26	1.93
41693766--41693861	31	3.1	31	93	0	156	43	14	10	31	1.79
41697762--41697825	22	3.0	22	83	2	76	29	1	4	64	1.23
41697790--41697832	21	2.0	21	90	0	68	39	0	4	55	1.20
41708813--41708858	20	2.2	21	77	11	51	36	2	13	47	1.54
41715944--41716024	28	2.9	27	87	7	117	60	16	4	18	1.53
41716837--41716895	29	2.0	30	90	3	93	50	13	5	30	1.63
41716847--41716917	29	2.4	28	79	11	79	45	14	7	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41721398--41721479	39	2.1	39	95	0	146	37	26	7	28	1.83
41729471--41729531	26	2.4	25	78	10	61	42	1	3	52	1.27
41731531--41731555	6	4.2	6	100	0	50	20	0	0	80	0.72
41735164--41735225	18	3.5	18	73	4	72	66	0	3	30	1.08
41735163--41735230	35	1.9	36	93	3	120	64	0	2	32	1.08
41738794--41738851	30	1.9	30	85	3	80	43	8	13	34	1.75
41744544--41744710	43	3.9	43	79	7	160	34	26	15	22	1.94
41744607--41744710	44	2.4	42	84	4	136	35	25	14	24	1.93
41748450--41748518	3	23.0	3	79	16	72	63	1	4	30	1.22
41772131--41772161	16	1.9	16	93	0	53	6	3	41	48	1.45
41776178--41776216	20	2.0	20	84	0	51	35	7	15	41	1.76
41777373--41777405	15	2.2	15	89	10	50	39	0	27	33	1.57
41784081--41785072	44	22.8	45	69	13	334	27	23	20	29	1.98
41784127--41785098	172	5.6	170	72	13	592	27	23	19	29	1.98
41784344--41784556	89	2.4	88	95	0	354	27	24	18	29	1.98
41784132--41784772	305	2.1	302	85	6	866	27	22	19	29	1.98
41784751--41785025	84	3.2	85	66	15	233	28	24	20	27	1.99
41786296--41786330	11	3.1	11	95	4	61	0	20	0	80	0.72
41794244--41794304	27	2.4	25	81	8	68	65	4	1	27	1.22
41794254--41794308	27	2.1	25	90	6	83	67	0	1	30	1.01
41794254--41794316	25	2.4	27	86	5	94	61	0	1	36	1.05
41795577--41795779	30	6.7	30	76	7	162	45	10	3	40	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41795561--41795795	60	3.9	60	76	11	203	42	11	3	41	1.60
41795547--41795779	30	7.8	28	73	11	160	45	11	3	39	1.58
41795704--41795779	31	2.6	28	81	10	89	51	13	0	35	1.41
41801791--41801819	13	2.2	13	100	0	58	44	6	6	41	1.58
41804858--41804910	26	2.0	26	100	0	106	43	3	22	30	1.71
41813847--41814765	44	20.9	44	74	6	718	30	25	16	27	1.97
41814030--41814765	132	5.6	131	93	1	1157	30	25	16	27	1.97
41813833--41814526	352	2.0	351	86	2	982	30	25	16	27	1.96
41814880--41815034	45	3.3	45	66	18	127	29	23	18	29	1.98
41814878--41815071	95	2.0	95	97	0	370	27	21	20	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214