genome.fa.s25.2.7.7.80.10.50.1000.212.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  212  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62690400--62690543	53	2.8	53	80	6	145	61	0	5	32	1.24
62693743--62693855	20	5.7	18	74	16	75	26	9	9	53	1.64
62693743--62693854	40	2.8	40	82	4	129	26	9	9	53	1.65
62695020--62695067	11	4.5	11	76	2	53	31	4	8	56	1.48
62695020--62695067	22	2.2	21	85	3	60	31	4	8	56	1.48
62698561--62698616	29	1.9	29	82	13	71	33	10	1	53	1.46
62701986--62702041	29	1.9	29	82	13	71	33	10	3	51	1.54
62709180--62709213	17	2.0	17	88	0	50	64	0	0	35	0.94
62718887--62719001	56	2.1	56	100	0	230	41	19	10	28	1.84
62722555--62722596	18	2.4	17	76	15	50	33	19	2	45	1.63
62731459--62731521	22	3.0	22	75	22	64	6	41	4	47	1.50
62742525--62742577	26	2.1	26	86	10	74	20	7	7	64	1.44
62744135--62744178	24	1.9	23	81	9	54	38	2	0	59	1.10
62744508--62744605	29	3.3	30	82	4	128	33	23	3	39	1.70
62745091--62745172	4	22.0	4	73	24	56	74	0	25	0	0.82
62745093--62745173	15	5.7	15	75	16	68	75	0	24	0	0.81
62745091--62745172	11	7.4	11	74	17	71	74	0	25	0	0.82
62745482--62745532	14	3.7	14	76	10	52	72	0	27	0	0.85
62745496--62745530	15	2.3	15	90	5	52	77	0	22	0	0.78
62745867--62746194	17	18.6	17	71	13	155	29	10	10	49	1.70
62745868--62746194	18	18.5	18	73	10	212	29	10	10	49	1.69
62749330--62749363	17	2.0	17	88	0	50	47	14	8	29	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62770346--62770469	57	2.2	56	91	1	203	27	27	3	41	1.71
62772454--62772513	30	2.0	29	93	3	102	30	0	11	58	1.34
62772463--62772533	30	2.4	30	85	4	90	33	4	8	53	1.51
62772463--62772534	29	2.4	29	84	6	74	33	4	9	52	1.53
62772641--62772726	31	2.8	32	76	11	92	45	13	5	34	1.68
62773117--62773180	23	3.0	22	75	16	57	53	0	1	45	1.10
62773194--62773266	30	2.4	31	79	4	76	52	4	0	43	1.20
62774036--62774077	22	2.0	21	85	4	57	64	7	0	28	1.20
62782124--62782181	29	2.0	29	86	0	80	41	3	10	44	1.55
62782249--62782273	2	12.5	2	100	0	50	52	0	0	48	1.00
62784759--62784801	11	3.8	11	80	17	52	65	2	2	30	1.18
62785176--62785225	3	16.7	3	100	0	100	34	0	0	66	0.92
62785831--62785891	20	3.0	20	74	6	70	27	4	3	63	1.30
62795064--62795099	16	2.2	16	90	5	54	16	5	11	66	1.40
62795946--62796042	40	2.4	40	76	6	99	37	21	19	21	1.95
62796112--62796208	41	2.4	41	76	0	104	22	16	24	36	1.94
62796201--62796306	41	2.6	41	82	5	108	24	19	25	30	1.98
62796400--62796449	26	1.9	26	83	0	64	56	8	12	24	1.62
62796715--62796747	14	2.3	15	94	5	59	33	0	30	36	1.58
62796836--62796986	83	1.8	83	85	5	218	31	2	23	43	1.68
62796967--62797024	28	2.1	28	83	0	71	22	1	39	36	1.64
62797117--62797155	7	5.6	7	81	0	51	23	0	51	25	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62797578--62797612	15	2.2	16	95	5	63	37	0	11	51	1.38
62800180--62800239	30	2.0	30	87	3	86	43	3	23	30	1.70
62800449--62800480	13	2.5	13	94	0	55	31	0	12	56	1.37
62800575--62800816	50	4.7	50	85	4	288	26	23	29	20	1.99
62800575--62800824	100	2.4	103	87	6	355	26	23	29	21	1.99
62802620--62802716	45	2.2	45	90	0	149	41	4	7	47	1.50
62802766--62802975	12	19.1	12	63	25	65	48	18	1	31	1.57
62802778--62803299	9	61.4	9	66	18	178	46	18	2	31	1.62
62802810--62802865	19	3.3	19	63	31	54	53	12	0	33	1.39
62802823--62802899	8	10.5	8	74	19	62	57	11	0	31	1.35
62802807--62802877	31	2.3	31	97	0	133	52	12	0	35	1.40
62802820--62802894	31	2.6	28	87	8	98	56	10	0	33	1.34
62802756--62802991	21	11.0	21	71	20	159	46	18	2	32	1.63
62802969--62803085	25	4.7	25	70	8	60	45	21	3	29	1.68
62802865--62803303	16	26.1	16	65	18	128	46	18	2	31	1.63
62803044--62803313	120	2.2	120	96	1	488	46	19	2	31	1.62
62803167--62803247	34	2.4	33	82	12	85	45	20	3	29	1.69
62803273--62803312	16	2.5	16	87	0	53	47	20	2	30	1.63
62805322--62805359	19	2.0	19	94	0	67	28	10	2	57	1.45
62805558--62805875	43	7.4	43	89	2	449	24	17	31	26	1.97
62805577--62805875	130	2.3	130	89	3	460	22	16	32	27	1.96
62805557--62805875	173	1.8	173	89	4	500	24	17	31	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62807399--62807442	23	2.0	22	86	4	61	38	2	0	59	1.10
62813112--62813187	36	2.0	38	85	10	102	28	11	15	43	1.83
62827290--62827336	19	2.5	19	86	3	69	46	8	19	25	1.77
62831675--62831704	4	7.8	4	92	7	53	23	0	0	76	0.78
62835233--62835262	9	3.3	9	100	0	60	90	0	10	0	0.47
62840301--62840375	31	2.5	29	75	14	80	42	8	8	41	1.63
62846409--62846459	23	2.2	23	78	0	57	50	0	1	47	1.12
62850627--62850750	30	4.1	30	93	1	203	25	24	6	43	1.78
62850637--62850744	15	7.2	15	67	12	78	25	22	7	44	1.79
62855321--62855444	30	4.1	30	91	1	194	25	23	6	44	1.77
62858364--62858421	31	1.9	31	82	3	73	22	10	8	58	1.58
62860279--62860327	21	2.3	21	79	6	55	40	4	8	46	1.52
62864508--62865186	205	3.3	204	89	5	984	40	18	13	27	1.88
62870008--62870072	33	2.0	33	90	0	103	44	30	4	20	1.71
62872548--62872580	11	2.8	12	86	13	50	0	12	15	72	1.12
62875842--62875881	14	2.7	16	74	18	50	37	2	0	60	1.11
62876431--62876468	18	2.0	20	90	10	62	63	0	0	36	0.95
62876426--62876466	11	4.1	11	76	23	54	63	0	0	36	0.95
62882894--62882932	3	13.0	3	100	0	78	33	0	0	66	0.92
62894996--62895115	37	3.3	37	67	15	97	50	4	9	36	1.54
62906427--62906456	3	10.3	3	92	7	53	36	0	0	63	0.95
62907735--62907764	15	1.9	16	93	6	53	33	3	0	63	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62907792--62907842	26	1.9	27	88	11	79	27	1	1	68	1.11
62909661--62909687	14	1.9	14	100	0	54	25	22	14	37	1.93
62911181--62911256	33	2.3	33	88	0	107	25	27	10	36	1.89
62911516--62911600	42	2.0	42	95	0	152	24	30	14	30	1.94
62912094--62912132	17	2.3	17	100	0	78	25	20	5	48	1.70
62915985--62916021	19	1.9	19	88	0	56	54	24	5	16	1.63
62918875--62918943	29	2.3	30	80	9	70	39	10	1	49	1.46
62918989--62919074	30	2.8	30	79	10	102	56	5	4	32	1.43
62919413--62919450	18	2.1	18	100	0	76	21	5	34	39	1.76
62925846--62925967	59	2.1	59	100	0	244	34	16	22	26	1.95
62929331--62929370	21	1.9	21	84	0	53	25	5	0	70	1.08
62930274--62930315	22	2.0	22	86	13	61	61	4	0	33	1.17
62933546--62933591	17	2.6	18	77	16	51	58	2	6	32	1.36
62934786--62934829	16	2.6	18	78	14	65	63	0	2	34	1.07
62935224--62935258	3	11.7	3	87	0	52	60	0	5	34	1.21
62940134--62940179	16	2.9	16	84	9	60	69	0	2	28	1.00
62960392--62960447	20	2.8	20	83	2	58	66	1	3	28	1.19
62960385--62960476	18	4.9	18	72	16	62	67	2	3	27	1.18
62960436--62960499	28	2.2	27	82	17	76	70	3	3	23	1.16
62960523--62960558	18	1.9	19	88	5	56	63	0	5	30	1.17
62964569--62964615	21	2.2	22	88	3	69	23	19	36	21	1.95
62976367--62976400	12	2.8	12	90	0	50	47	20	17	14	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62978055--62978079	7	3.6	7	100	0	50	36	0	0	64	0.94
62980982--62981191	102	2.1	102	97	0	393	21	24	10	43	1.84
62988113--62988137	5	5.0	5	100	0	50	40	0	0	60	0.97
62990465--62990520	28	2.0	28	85	0	76	35	5	1	57	1.32
63000344--63000404	31	2.0	31	93	0	104	27	24	16	31	1.96
63000840--63000888	4	12.2	4	100	0	98	48	26	0	24	1.51
63004347--63004383	13	2.9	13	92	4	58	35	0	0	64	0.94
63004448--63004499	11	5.0	10	76	6	50	59	1	1	36	1.19
63004449--63004499	21	2.4	21	80	6	59	60	1	1	35	1.19
63012312--63012363	24	2.2	24	89	0	77	55	9	1	32	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214