genome.fa.s25.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  40  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11090573--11091075	247	2.0	247	96	0	927	35	15	14	33	1.88
11100113--11100155	19	2.3	19	88	4	61	46	0	18	34	1.50
11101795--11101865	28	2.5	28	86	4	88	26	28	28	16	1.97
11103878--11103918	19	2.2	19	95	4	75	29	4	7	58	1.46
11104382--11104496	16	7.2	16	87	3	151	27	26	5	40	1.77
11106848--11107394	291	1.9	291	89	0	853	36	13	14	35	1.86
11108673--11108714	22	1.9	22	90	0	66	42	9	0	47	1.36
11113923--11113947	4	6.2	4	100	0	50	24	0	0	76	0.80
11119107--11119140	9	3.8	9	84	0	50	85	0	5	8	0.75
11120024--11120681	44	14.6	45	69	12	199	31	19	20	27	1.97
11120108--11120282	87	2.0	88	85	2	235	32	17	22	27	1.96
11120199--11120500	137	2.2	136	91	2	473	32	18	20	29	1.96
11120437--11120604	93	1.8	90	83	3	219	31	21	21	25	1.98
11121472--11121506	5	7.0	5	100	0	70	20	0	0	80	0.72
11122711--11122980	130	2.1	131	91	0	443	37	12	14	35	1.84
11134485--11134513	5	5.8	5	100	0	58	62	0	0	37	0.96
11135590--11135644	20	2.9	19	77	15	60	50	1	0	47	1.11
11144680--11144736	21	2.8	21	84	5	73	40	19	26	14	1.89
11146458--11146489	17	1.9	17	93	6	57	40	9	0	50	1.35
11149740--11149785	14	3.5	14	77	11	53	80	6	0	13	0.89
11149736--11149784	22	2.1	22	81	11	53	81	6	0	12	0.86
11149747--11149793	22	2.1	23	84	4	60	78	4	0	17	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11150188--11150212	13	1.9	13	100	0	50	20	0	0	80	0.72
11156038--11156605	126	4.5	126	84	3	707	30	15	22	30	1.95
11156038--11156605	251	2.3	250	86	2	766	30	15	22	30	1.95
11159779--11160274	22	23.0	22	84	5	604	24	0	30	43	1.59
11159779--11160274	43	11.5	43	84	4	633	24	0	30	43	1.59
11160850--11160892	18	2.4	18	84	0	59	46	9	27	16	1.77
11161631--11161668	20	1.9	20	84	10	51	55	7	2	34	1.43
11162319--11162358	21	1.9	21	100	0	80	25	25	22	27	2.00
11162637--11162734	51	1.9	51	87	4	144	45	3	24	26	1.67
11162696--11162762	22	3.0	22	76	23	77	43	1	26	28	1.64
11162696--11162755	11	5.4	11	74	21	54	43	1	25	30	1.64
11166192--11166265	33	2.2	33	97	2	139	36	8	21	33	1.83
11167534--11167573	3	13.3	3	100	0	80	67	0	0	32	0.91
11169293--11170117	44	18.5	44	73	3	565	26	23	19	30	1.98
11169267--11169438	89	1.9	89	85	2	238	29	25	17	27	1.97
11169221--11170126	225	4.1	222	80	4	833	26	24	19	30	1.98
11169315--11169533	92	2.4	91	81	6	214	29	24	17	28	1.98
11169533--11170117	89	6.6	89	96	0	1055	25	23	20	31	1.98
11173541--11173583	22	2.0	22	81	9	52	53	11	11	23	1.69
11173582--11173647	22	3.1	22	81	14	77	74	4	10	10	1.21
11175833--11175869	4	9.2	4	100	0	74	24	0	27	48	1.51
11176899--11176941	22	2.0	22	81	9	52	34	0	6	58	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11178639--11178743	43	2.4	43	83	0	138	32	25	15	26	1.95
11179085--11179222	66	2.1	66	84	2	179	13	24	18	42	1.87
11187657--11187682	9	2.9	9	100	0	52	34	0	19	46	1.50
11188210--11188257	25	1.9	25	95	0	87	56	2	8	33	1.41
11190475--11190529	20	2.8	20	80	2	67	56	0	7	36	1.27
11191216--11191333	58	2.0	58	98	0	227	38	5	8	48	1.56
11191999--11192124	41	3.1	41	83	2	164	17	26	18	38	1.92
11192013--11192138	41	3.1	41	84	1	164	19	23	15	41	1.90
11193957--11194013	10	5.7	10	77	6	62	36	0	7	56	1.27
11193957--11194013	20	2.8	19	84	5	69	36	0	7	56	1.27
11194460--11194504	20	2.2	21	92	4	74	51	17	4	26	1.65
11194801--11194885	43	2.0	43	92	0	143	37	5	20	36	1.77
11195198--11195259	31	2.0	31	96	0	115	43	3	25	27	1.70
11197039--11197090	25	2.1	25	96	0	95	15	3	19	61	1.48
11201515--11201556	20	2.1	20	86	0	57	47	0	7	45	1.30
11201704--11201742	21	1.9	21	84	5	53	35	0	5	58	1.20
11206268--11206304	3	12.3	3	100	0	74	67	0	0	32	0.91
11206766--11206798	16	2.1	16	100	0	66	42	6	33	18	1.75
11207041--11207092	22	2.4	21	79	17	54	55	5	0	38	1.24
11211209--11211247	18	2.2	18	85	0	51	61	2	23	12	1.43
11214836--11214905	24	2.9	24	83	8	97	41	12	11	34	1.79
11215711--11215753	7	6.3	7	94	5	79	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11215847--11215914	33	2.1	33	97	0	127	51	0	7	41	1.30
11228096--11228133	8	4.8	8	83	9	51	15	0	0	84	0.63
11228596--11228652	19	3.1	19	73	14	57	21	3	1	73	1.07
11229072--11229097	2	13.0	2	100	0	52	50	0	0	50	1.00
11236487--11236517	16	1.9	16	100	0	62	22	0	0	77	0.77
11237568--11237625	3	19.3	3	96	0	107	34	0	31	34	1.58
11243241--11243272	16	2.0	16	100	0	64	50	18	6	25	1.70
11250651--11250677	6	4.5	6	100	0	54	51	14	0	33	1.43
11251249--11251338	25	3.6	25	77	3	92	33	21	25	20	1.97
11251305--11251385	24	3.3	24	78	1	90	32	22	24	20	1.98
11256704--11256735	5	6.4	5	100	0	64	0	62	0	37	0.95
11258534--11258592	22	2.7	21	74	7	64	40	5	0	54	1.23
11263020--11263050	12	2.6	12	94	0	53	45	0	0	54	0.99
11264109--11264133	5	5.0	5	100	0	50	40	0	20	40	1.52
11269499--11269581	42	2.0	42	95	0	148	42	16	7	33	1.76
11270018--11270548	264	2.0	264	99	0	1053	31	24	14	30	1.95
11274303--11274350	26	1.9	24	87	8	69	58	10	0	31	1.32
11276511--11276535	11	2.3	11	100	0	50	52	8	24	16	1.70
11276534--11276585	26	1.9	28	84	7	72	71	11	13	3	1.28
11277161--11277247	31	2.9	29	77	17	81	41	10	12	35	1.77
11279887--11279931	23	2.0	23	91	4	74	40	17	4	37	1.70
11279887--11279963	19	3.8	19	86	6	82	38	18	7	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11280273--11281260	44	22.7	45	68	18	359	27	22	20	30	1.98
11280313--11280915	173	3.5	173	85	4	721	27	22	20	30	1.98
11280266--11280955	350	2.0	350	82	4	863	27	22	19	30	1.98
11280266--11280955	173	3.9	175	84	5	702	27	22	19	30	1.98
11280670--11281279	217	2.8	216	84	4	800	27	22	20	29	1.98
11281243--11281655	132	3.1	132	92	0	655	24	24	20	30	1.98
11288385--11288423	19	2.0	21	85	10	55	69	5	10	15	1.34
11288623--11288695	19	3.7	19	85	7	92	39	15	9	35	1.80
11288632--11288694	21	3.1	21	88	9	103	39	14	9	36	1.78
11288624--11288705	19	4.3	18	83	11	67	39	15	10	34	1.83
11289323--11289408	44	2.0	44	88	2	129	47	11	10	30	1.73
11296093--11296183	44	2.1	44	91	0	146	47	14	12	26	1.79
11306188--11306441	128	2.0	128	90	0	400	29	19	18	32	1.95
11311620--11311663	22	2.0	23	90	4	72	63	13	11	11	1.52
11312551--11312623	24	3.2	23	71	15	71	47	5	9	36	1.59
11312549--11312639	44	2.1	44	93	0	155	49	4	7	38	1.52
11312549--11312612	20	3.0	21	70	17	67	48	1	10	39	1.48
11314966--11314999	17	2.0	17	94	0	59	26	11	26	35	1.91
11326864--11326903	20	2.0	20	100	0	80	35	15	10	40	1.80
11328369--11328671	40	7.6	40	89	2	396	27	28	20	24	1.99
11336362--11336664	40	7.6	40	89	2	396	27	28	20	24	1.99
11340675--11340737	28	2.2	28	94	0	108	12	15	9	61	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11341378--11341416	17	2.4	17	86	4	53	43	2	0	53	1.14
11341897--11342077	43	4.2	43	73	2	121	28	20	19	30	1.97
11342443--11342494	21	2.5	21	81	9	61	7	44	13	34	1.72
11345368--11347045	835	2.0	835	97	0	3178	32	18	17	30	1.95
11348750--11349297	9	62.4	9	78	11	515	33	1	16	48	1.56
11352894--11352928	14	2.4	15	90	4	54	42	37	0	20	1.52
11353843--11354070	115	2.0	115	86	3	316	25	23	18	32	1.97
11354323--11354585	112	2.3	112	79	3	298	26	23	19	30	1.98
11353837--11355081	510	2.4	510	93	1	2082	25	22	20	32	1.98
11359509--11359935	110	3.9	110	88	3	592	34	18	16	29	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214