genome.fa.s25.2.7.7.80.10.50.1000.207.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  207  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60886291--60886323	18	1.9	17	88	11	50	12	36	18	33	1.88
60887628--60887709	26	3.2	26	94	0	146	36	25	6	31	1.81
60891911--60891950	19	2.1	19	85	0	53	30	2	2	65	1.19
60893478--60893534	24	2.4	24	77	13	64	24	5	12	57	1.55
60893873--60893926	21	2.6	21	81	0	63	29	3	5	61	1.36
60895754--60895779	6	4.3	6	100	0	52	19	15	15	50	1.79
60897975--60898033	29	2.0	29	96	0	109	52	22	15	10	1.72
60903963--60904009	25	1.9	25	82	4	60	17	6	21	55	1.64
60904216--60904373	79	2.0	79	97	0	298	37	21	9	31	1.86
60905590--60905630	3	13.7	3	92	0	64	2	36	26	34	1.70
60905587--60905632	21	2.2	21	96	0	83	6	34	23	34	1.81
60906517--60906572	20	2.8	20	83	5	69	67	0	7	25	1.15
60906733--60906789	6	9.3	6	79	11	62	17	5	0	77	0.95
60907016--60907061	24	2.0	23	86	4	65	60	8	0	30	1.26
60907206--60907280	17	4.0	17	77	17	78	26	1	1	70	1.03
60907218--60907270	22	2.3	23	81	12	65	24	1	1	71	1.06
60907239--60907300	26	2.3	27	83	5	72	27	1	3	67	1.15
60909970--60909995	3	8.7	3	100	0	52	34	30	0	34	1.58
60915057--60915096	21	1.9	21	84	0	53	57	7	7	27	1.53
60924038--60924111	31	2.4	31	81	2	87	41	13	12	32	1.81
60926731--60926839	47	2.2	49	80	6	123	22	13	27	35	1.92
60927363--60927476	25	4.6	25	86	0	156	21	21	18	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60927363--60927476	50	2.3	50	90	0	174	21	21	18	39	1.93
60927438--60927494	25	2.4	25	80	8	66	15	19	22	42	1.89
60927438--60927517	22	3.5	24	78	11	62	18	18	20	42	1.89
60928803--60928827	13	1.9	13	100	0	50	60	16	0	24	1.36
60929594--60929740	37	4.0	37	91	1	226	25	21	15	36	1.93
60929703--60929919	52	4.2	52	84	8	293	27	23	14	35	1.93
60929702--60929925	98	2.3	98	94	0	394	28	23	14	34	1.93
60932600--60932660	30	2.0	30	93	0	104	42	11	14	31	1.81
60933170--60933415	121	2.0	122	98	0	476	47	11	9	31	1.72
60935079--60935130	25	2.1	24	89	3	77	26	30	15	26	1.96
60936140--60936196	28	2.1	26	84	12	71	43	3	0	52	1.18
60938288--60938330	17	2.8	16	80	20	56	41	0	2	55	1.12
60942336--60942362	6	4.5	6	100	0	54	0	33	37	29	1.58
60948128--60948152	2	12.5	2	100	0	50	0	48	0	52	1.00
60950063--60950137	18	4.2	18	92	0	123	28	24	16	32	1.96
60965487--60965532	23	2.0	23	95	0	83	32	43	2	21	1.65
60965648--60965983	170	2.0	170	95	0	609	29	20	10	39	1.86
60966139--60966208	33	2.1	33	100	0	140	45	7	11	35	1.68
60967267--60967306	9	4.4	9	90	0	53	47	22	5	25	1.71
60967413--60967447	18	1.9	18	100	0	70	8	0	51	40	1.33
60967414--60967461	23	2.1	23	88	0	69	10	2	45	41	1.50
60969938--60969963	12	2.2	12	100	0	52	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60970569--60970622	27	2.0	27	85	7	74	33	5	27	33	1.80
60972559--60972590	16	1.9	17	93	6	57	46	0	25	28	1.53
60972559--60972603	17	2.6	16	86	10	54	48	0	28	22	1.50
60972953--60972989	9	4.1	9	92	0	65	29	10	13	45	1.77
60974483--60974582	48	2.1	48	94	0	173	48	11	10	31	1.71
60974520--60974644	62	2.0	62	84	6	164	48	8	7	35	1.62
60977720--60977777	31	1.9	31	92	3	100	15	6	13	63	1.49
60981243--60981297	24	2.3	24	87	0	74	16	29	25	29	1.97
60981253--60981306	24	2.2	24	83	0	63	18	25	27	27	1.98
60981680--60981716	15	2.4	17	82	17	53	56	0	10	32	1.34
61003394--61003434	21	2.0	21	85	0	55	21	29	19	29	1.98
61012427--61012617	80	2.5	79	81	8	200	41	2	14	41	1.59
61012981--61013089	41	2.6	41	86	4	157	28	18	29	23	1.98
61018727--61018751	13	1.9	13	100	0	50	8	0	24	68	1.16
61020636--61020711	40	1.9	40	84	10	102	31	13	22	32	1.92
61021456--61021493	18	2.1	18	95	0	67	23	21	0	55	1.44
61023892--61023924	10	3.0	11	86	13	50	18	36	0	45	1.49
61023936--61024022	29	3.2	29	64	21	80	31	25	0	43	1.55
61023907--61024029	51	2.4	51	94	1	212	28	26	0	45	1.54
61027220--61027491	46	6.6	44	72	22	225	36	12	21	29	1.90
61027256--61027448	36	5.0	36	81	14	206	37	12	20	30	1.89
61027220--61027412	82	2.3	82	91	1	314	37	12	21	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61027256--61027491	120	2.0	115	88	4	346	36	13	20	29	1.91
61027220--61027448	82	2.9	78	87	6	252	37	11	20	30	1.89
61028876--61028937	23	2.7	23	92	0	106	45	20	0	33	1.52
61031989--61032327	123	2.7	122	84	7	443	33	21	15	29	1.94
61041890--61042188	91	3.1	99	81	13	304	46	3	3	47	1.33
61041855--61042113	91	2.8	91	98	0	491	47	3	2	47	1.32
61042263--61042304	15	2.7	16	82	14	52	45	0	2	52	1.13
61042254--61042295	15	2.9	15	82	10	52	47	0	0	52	1.00
61042449--61042539	45	2.0	44	87	2	128	34	28	5	31	1.80
61042518--61042555	16	2.4	16	90	0	58	34	34	0	31	1.58
61042957--61043004	15	3.2	15	80	13	55	52	8	2	37	1.44
61044458--61044504	21	2.4	19	82	7	58	36	10	0	53	1.36
61044618--61044647	11	2.7	11	89	0	51	0	10	0	90	0.47
61045981--61046030	19	2.7	20	81	12	61	38	0	0	62	0.96
61052757--61052799	21	2.0	21	100	0	86	46	4	9	39	1.57
61055948--61055976	14	2.1	14	100	0	58	13	44	6	34	1.71
61057174--61057208	15	2.2	16	90	5	54	48	11	2	37	1.54
61084315--61084380	31	2.2	30	83	2	78	42	13	12	31	1.81
61086018--61086089	30	2.5	30	78	13	87	52	2	12	31	1.53
61087198--61087258	29	2.1	29	84	6	79	44	6	1	47	1.39
61091057--61091114	29	1.9	31	89	6	93	65	5	5	24	1.34
61091502--61091735	113	2.1	111	81	8	269	21	22	24	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61092058--61092114	28	2.0	28	100	0	114	47	10	7	35	1.65
61092097--61092145	18	2.5	21	80	9	59	61	10	2	26	1.39
61092411--61092441	15	2.0	16	93	6	55	16	0	45	38	1.47
61092733--61092811	21	3.8	21	70	6	70	10	0	43	46	1.37
61093220--61093736	230	2.2	230	89	1	777	28	18	20	33	1.96
61094066--61094109	19	2.3	19	84	0	61	31	43	2	22	1.66
61096126--61096916	37	20.9	39	66	16	167	45	10	4	39	1.60
61096145--61096272	57	2.3	56	86	4	168	46	10	3	39	1.56
61096232--61096353	37	3.3	37	89	0	190	48	10	5	35	1.62
61096290--61096657	115	3.2	113	89	3	542	45	10	5	38	1.62
61096295--61096657	57	6.4	57	85	3	498	45	10	5	38	1.62
61096561--61096806	76	3.3	75	81	5	275	44	10	4	40	1.60
61096506--61096865	208	1.8	199	84	13	501	44	10	5	39	1.61
61096765--61096794	9	3.3	9	90	0	51	46	16	0	36	1.47
61096713--61097018	112	2.7	112	98	0	585	47	11	4	37	1.59
61096713--61097002	57	5.2	56	80	7	365	46	11	4	37	1.59
61096877--61096906	9	3.3	9	90	0	51	46	16	0	36	1.47
61096390--61096977	320	1.8	322	89	3	925	45	10	5	39	1.62
61096989--61097252	9	30.1	9	75	9	242	45	20	1	32	1.60
61099197--61099267	21	3.4	21	86	0	97	29	18	47	4	1.67
61099627--61099825	42	4.7	42	86	3	276	23	19	23	34	1.96
61100227--61100289	25	2.5	25	84	2	72	19	9	11	60	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61100731--61100776	23	2.0	23	83	8	58	60	6	2	30	1.34
61107041--61107090	25	2.0	25	84	7	66	78	0	18	4	0.91
61107533--61107566	5	6.8	5	96	0	59	23	0	20	55	1.43
61110670--61110694	11	2.3	11	100	0	50	28	0	8	64	1.22
61113022--61113098	40	1.9	40	86	0	109	29	7	20	41	1.81
61113312--61113461	45	3.4	45	81	1	176	23	18	18	40	1.91
61116069--61116551	241	2.0	241	98	0	930	27	14	21	36	1.92
61122879--61122910	3	11.0	3	93	6	57	34	0	0	65	0.93
61124061--61124094	3	11.3	3	100	0	68	32	32	0	35	1.58
61130830--61130886	24	2.3	24	82	8	71	61	3	0	35	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214