genome.fa.s25.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  149  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44429768--44430067	96	3.2	93	82	2	339	39	16	3	41	1.65
44430108--44430162	27	1.9	30	89	10	89	50	38	0	10	1.37
44430348--44430397	23	2.2	23	88	0	73	50	10	2	38	1.48
44430743--44430832	39	2.2	41	90	3	139	53	4	2	40	1.33
44431367--44431422	21	2.7	20	72	25	53	10	21	5	62	1.47
44448303--44448621	135	2.3	137	88	6	463	45	15	7	31	1.74
44456669--44456724	21	2.7	21	85	0	76	25	10	35	28	1.89
44458549--44458611	4	15.8	4	100	0	126	25	0	23	50	1.49
44458982--44459040	3	19.7	3	78	0	64	59	5	3	32	1.36
44461019--44461050	12	2.7	12	95	0	55	34	3	0	62	1.11
44474777--44474817	19	2.3	18	87	8	57	39	7	0	53	1.29
44475679--44476672	251	3.9	245	74	12	696	37	10	16	35	1.83
44475587--44476672	250	4.3	248	74	11	871	37	10	17	34	1.84
44475932--44476783	251	3.4	252	75	9	550	37	10	15	36	1.83
44479471--44479516	22	2.3	19	82	14	56	30	15	15	39	1.88
44482112--44482191	2	40.5	2	97	2	153	50	0	50	0	1.00
44483237--44483298	26	2.4	26	94	0	106	64	6	4	24	1.37
44500563--44500591	12	2.5	12	94	5	51	27	17	10	44	1.81
44511850--44512058	105	2.0	105	91	0	337	29	26	22	22	1.99
44516501--44516580	4	19.5	4	74	23	62	23	2	0	73	0.95
44516524--44516573	5	10.0	5	75	16	50	22	4	0	74	0.99
44516500--44516577	35	2.3	33	87	10	106	23	2	0	74	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44517904--44517953	24	2.1	23	81	3	55	74	4	6	16	1.17
44518539--44518580	18	2.3	18	84	8	50	30	0	4	64	1.14
44520255--44520461	46	4.6	46	93	2	350	28	22	15	33	1.94
44528035--44528131	25	3.9	24	77	5	68	35	21	20	22	1.96
44528021--44528119	50	2.0	50	80	4	110	31	23	22	23	1.99
44530382--44530446	32	2.0	32	100	0	130	44	12	12	30	1.79
44531377--44531450	27	2.8	27	79	2	87	35	25	17	21	1.95
44534877--44534912	16	2.2	16	100	0	72	47	11	5	36	1.63
44551761--44551826	31	2.2	30	84	13	82	43	0	0	56	0.99
44553047--44553102	23	2.3	23	84	12	67	67	0	1	30	1.01
44559955--44559984	14	2.1	14	93	6	51	43	0	10	46	1.37
44559958--44559999	14	3.1	13	86	13	50	45	0	7	47	1.30
44559958--44559999	19	2.3	18	84	8	57	45	0	7	47	1.30
44572977--44573338	47	7.6	47	93	1	553	33	8	29	28	1.86
44572977--44573338	96	3.8	96	91	2	570	33	8	29	28	1.86
44575568--44575924	40	8.9	40	89	1	518	24	22	27	24	2.00
44579188--44579377	49	4.1	41	71	24	130	34	8	28	28	1.86
44579189--44579701	47	10.6	49	89	7	730	33	8	29	28	1.87
44579189--44579701	199	2.7	192	89	6	754	33	8	29	28	1.87
44590939--44590979	21	2.0	21	90	0	64	19	29	21	29	1.98
44598922--44598980	26	2.2	26	82	8	66	32	3	3	61	1.29
44599107--44599166	7	7.7	7	76	20	57	33	5	0	61	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44599070--44599175	8	12.4	9	70	24	63	31	3	1	63	1.23
44599061--44599152	35	2.6	36	80	8	93	30	5	2	61	1.30
44599072--44599168	52	1.9	50	85	12	135	30	4	1	63	1.19
44599073--44599166	26	3.8	23	75	24	86	30	4	1	63	1.20
44603954--44603999	23	2.0	23	82	0	56	71	2	21	4	1.14
44604067--44604147	42	1.9	42	85	5	110	32	12	27	28	1.93
44605723--44605782	7	8.3	7	81	7	66	23	3	25	48	1.66
44605720--44605782	15	4.3	15	80	8	67	22	3	26	47	1.66
44605723--44605782	22	2.7	22	89	0	84	23	3	25	48	1.66
44606588--44606637	6	8.2	6	86	4	64	22	0	42	36	1.54
44606592--44606631	18	2.2	18	95	0	71	22	0	42	35	1.54
44606376--44606852	246	2.0	243	91	3	780	35	2	20	41	1.67
44610971--44611068	49	2.0	51	86	8	139	45	3	25	25	1.68
44611028--44611075	11	4.2	12	80	17	50	43	4	27	25	1.72
44611694--44611744	21	2.3	22	83	10	59	64	0	3	31	1.11
44611919--44612057	19	7.2	19	71	17	60	28	7	2	61	1.37
44611960--44612079	10	12.6	9	69	18	66	28	5	2	63	1.31
44611914--44612058	56	2.5	57	82	9	170	28	6	2	61	1.36
44611986--44612079	19	4.8	19	77	13	86	28	5	3	62	1.32
44611969--44612079	39	2.9	38	76	10	118	27	5	2	63	1.29
44612176--44612350	90	1.9	90	84	2	235	34	9	20	35	1.85
44612451--44612502	23	2.3	23	87	6	72	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44614126--44614199	37	2.0	36	87	7	105	33	1	0	64	1.02
44614964--44614998	9	3.7	10	88	11	56	74	0	0	25	0.82
44614964--44615020	19	3.1	19	82	5	62	70	0	1	28	0.98
44615195--44615286	19	4.8	19	91	0	157	38	10	15	35	1.82
44615479--44615517	19	2.1	19	85	9	53	15	10	5	69	1.34
44616338--44616532	98	2.0	98	95	0	354	27	10	25	36	1.89
44620057--44620086	6	4.8	6	95	4	51	86	13	0	0	0.57
44621337--44621992	132	5.0	132	88	2	996	26	18	25	29	1.98
44621346--44621992	265	2.4	263	90	2	987	27	18	24	29	1.98
44621823--44622017	44	4.4	44	70	13	114	27	16	26	30	1.97
44622220--44622292	19	3.8	19	92	0	128	38	9	15	36	1.80
44623348--44623542	98	2.0	98	91	2	320	29	10	23	36	1.89
44634742--44634787	24	2.0	24	83	8	60	10	10	4	73	1.22
44658858--44658930	35	2.1	35	100	0	146	36	10	8	43	1.70
44663215--44663289	20	3.7	22	91	7	90	44	0	0	56	0.99
44663237--44663289	5	10.6	5	100	0	106	39	0	0	60	0.97
44663511--44663542	16	1.9	17	93	6	57	75	0	25	0	0.81
44664535--44664639	45	2.3	45	85	3	131	20	16	19	44	1.86
44664619--44664666	6	7.8	6	78	2	51	14	22	18	43	1.87
44676494--44676735	126	1.9	126	88	3	371	25	26	16	32	1.96
44683891--44683950	23	2.6	23	76	19	63	25	0	6	68	1.14
44685343--44685422	42	1.9	43	82	10	103	30	27	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44688751--44688922	73	2.4	72	85	4	238	22	26	25	26	2.00
44690819--44690849	3	10.3	3	92	0	53	32	3	0	64	1.09
44714087--44714154	16	4.2	16	73	14	50	36	1	4	57	1.28
44714098--44714223	16	7.6	16	68	19	55	42	3	3	50	1.36
44714099--44714232	68	2.0	68	86	5	191	42	2	5	49	1.40
44717557--44717619	33	1.9	33	90	6	101	25	44	9	20	1.82
44719431--44719471	17	2.5	17	84	11	59	56	0	2	41	1.13
44719429--44719480	18	3.0	17	86	11	70	51	0	1	46	1.12
44721281--44721318	19	2.0	19	100	0	76	26	10	15	47	1.78
44731684--44731750	35	1.9	34	82	8	82	56	4	4	34	1.39
44733718--44733754	19	1.9	19	94	0	65	35	0	18	45	1.50
44733966--44734141	41	4.3	41	91	0	280	29	19	27	23	1.98
44733966--44734135	82	2.1	82	98	0	331	29	18	28	23	1.98
44741359--44741395	19	1.9	19	94	0	65	35	0	18	45	1.50
44741607--44741782	41	4.3	41	91	0	280	29	19	27	23	1.98
44741607--44741776	82	2.1	82	98	0	331	29	18	28	23	1.98
44755641--44755688	24	2.0	24	100	0	96	37	25	12	25	1.91
44758492--44758551	32	1.9	31	86	10	86	20	0	23	56	1.42
44762224--44762361	43	3.2	43	90	2	206	27	29	21	21	1.98
44764905--44765210	106	2.9	105	89	1	461	27	15	17	39	1.89
44765212--44765264	21	2.5	21	90	0	88	30	33	20	15	1.93
44765717--44766049	101	3.2	101	86	7	447	32	16	14	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44765717--44766098	109	3.6	101	85	7	462	32	17	14	35	1.90
44765717--44766098	208	1.8	205	85	7	536	32	17	14	35	1.90
44771859--44771917	5	11.4	5	79	15	50	81	0	16	1	0.78
44771858--44771935	12	6.5	12	72	25	67	79	0	19	1	0.80
44771858--44771928	7	10.3	7	77	15	60	80	0	18	1	0.79
44772259--44772561	103	2.9	103	86	3	419	26	17	8	48	1.75
44773456--44773869	46	9.0	46	91	0	612	24	16	28	30	1.96
44773966--44774132	44	3.8	44	77	6	160	28	19	25	26	1.98
44774153--44774242	44	2.0	44	91	0	144	33	17	21	27	1.96
44774158--44774313	44	3.5	44	80	5	129	31	23	19	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214