genome.fa.s25.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  181  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53195567--53195642	31	2.6	29	85	4	89	32	6	10	50	1.63
53201979--53202005	6	4.5	6	100	0	54	85	0	14	0	0.61
53206699--53206744	24	2.0	24	86	4	67	45	0	4	50	1.21
53207046--53207112	33	2.0	33	97	0	125	34	14	16	34	1.90
53206921--53207237	158	2.0	158	87	3	451	32	17	21	29	1.96
53207079--53207421	125	2.8	122	83	9	414	29	17	22	30	1.96
53210594--53210653	29	2.0	30	87	3	86	23	1	28	46	1.62
53210594--53210639	14	3.1	14	81	6	56	23	0	30	45	1.53
53210622--53211783	22	53.6	22	71	15	353	23	0	27	49	1.56
53210622--53210856	130	1.8	130	89	3	375	20	0	26	52	1.50
53210774--53210806	15	2.1	16	88	5	50	21	0	24	54	1.45
53210622--53210890	130	2.1	129	86	6	366	21	0	26	52	1.50
53210921--53211027	53	2.0	52	83	5	135	20	0	28	50	1.48
53211017--53211085	29	2.4	29	85	0	84	23	1	24	50	1.57
53211032--53211078	15	3.2	15	75	6	51	27	2	21	48	1.61
53211039--53211107	7	9.6	7	75	12	59	24	0	24	50	1.49
53211048--53211165	21	5.6	20	80	15	96	27	0	24	47	1.58
53211233--53211291	7	8.4	7	75	12	50	20	0	23	55	1.43
53211232--53211419	21	8.9	21	78	8	166	19	0	28	51	1.47
53211326--53211411	7	12.0	7	72	14	59	16	0	32	51	1.45
53211339--53211396	13	4.2	14	75	16	50	18	0	29	51	1.47
53211296--53211781	21	22.8	21	71	9	139	22	0	27	48	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53211512--53211544	15	2.1	16	88	5	50	18	0	24	57	1.40
53211520--53211957	43	10.2	43	72	10	235	19	0	30	49	1.54
53211613--53211768	65	2.4	65	78	5	165	17	1	29	51	1.54
53211866--53211937	21	3.4	21	84	3	99	22	0	30	47	1.52
53211923--53211983	7	8.7	7	74	5	52	8	0	47	44	1.33
53211922--53211983	14	4.4	14	80	13	74	9	0	46	43	1.36
53211988--53212027	21	1.9	21	89	0	62	27	0	22	50	1.50
53215978--53216028	18	2.8	19	79	11	70	0	17	15	66	1.25
53216050--53216074	10	2.5	10	100	0	50	0	0	8	92	0.40
53216040--53216100	29	2.1	29	81	6	70	4	9	8	77	1.13
53216649--53216711	31	2.0	32	96	3	119	42	15	9	31	1.79
53218236--53218290	11	4.8	12	86	6	71	45	1	30	21	1.62
53218239--53218298	22	2.6	22	82	15	77	43	1	31	23	1.64
53221224--53221256	10	3.3	10	87	12	50	9	18	0	72	1.10
53223125--53223167	13	3.3	13	84	9	52	58	0	4	37	1.19
53236884--53236960	38	2.0	38	94	0	136	31	16	3	48	1.65
53242267--53242344	29	2.6	29	83	4	93	47	14	14	24	1.80
53242292--53242365	29	2.5	29	86	4	94	50	16	13	20	1.78
53242899--53242928	15	2.0	15	100	0	60	46	20	13	20	1.83
53243744--53243783	20	2.0	20	85	9	55	42	17	22	17	1.89
53246515--53246559	22	2.0	22	95	0	81	40	4	6	48	1.49
53247507--53247546	16	2.5	16	100	0	80	25	27	5	42	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53247842--53247882	21	2.0	21	85	9	57	70	7	0	21	1.11
53247863--53247910	26	1.9	24	83	8	60	68	8	2	20	1.26
53252632--53252705	28	2.6	29	84	2	87	39	12	2	45	1.56
53257558--53257591	17	2.0	17	100	0	68	58	0	5	35	1.22
53261891--53261925	17	2.1	17	89	5	54	57	5	0	37	1.23
53265165--53265195	14	2.2	14	100	0	62	45	0	0	54	0.99
53267631--53267676	18	2.6	18	80	13	51	73	10	0	15	1.08
53269436--53269528	32	2.9	31	93	6	159	27	3	17	51	1.60
53270912--53270949	14	2.7	15	88	11	55	44	15	2	36	1.61
53278054--53278137	40	2.1	40	97	0	159	35	23	14	26	1.93
53285544--53285574	14	2.2	14	100	0	62	45	0	0	54	0.99
53287807--53287841	15	2.2	16	95	5	63	31	2	0	65	1.07
53288975--53289020	18	2.6	16	86	13	56	76	8	0	15	1.02
53288976--53289022	20	2.3	20	85	0	58	78	8	0	12	0.95
53291238--53291330	32	2.9	31	92	6	150	29	3	16	51	1.59
53292712--53292749	14	2.7	15	88	11	55	44	15	2	36	1.61
53299650--53299733	40	2.1	40	100	0	168	35	22	14	27	1.93
53306915--53306943	13	2.1	14	93	6	51	31	0	0	68	0.89
53307143--53307173	14	2.2	14	100	0	62	45	0	0	54	0.99
53307654--53307678	3	8.3	3	100	0	50	0	32	0	68	0.90
53309406--53309440	15	2.2	16	95	5	63	31	2	0	65	1.07
53315239--53315331	32	2.9	32	93	0	159	51	15	3	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53315963--53316091	59	2.1	63	80	11	153	30	3	15	51	1.59
53315998--53316089	32	2.9	32	91	4	143	29	3	15	52	1.58
53324430--53324513	40	2.1	40	97	0	159	35	23	14	26	1.93
53329148--53329191	1	44.0	1	86	0	61	4	2	0	93	0.42
53339986--53340010	3	8.3	3	100	0	50	0	32	0	68	0.90
53341735--53341767	15	2.1	16	94	5	59	30	3	0	66	1.06
53345785--53345818	3	11.3	3	100	0	68	0	32	0	67	0.91
53352873--53352923	21	2.4	21	83	6	59	37	1	17	43	1.61
53353371--53353438	24	2.9	24	86	2	84	17	26	23	32	1.97
53355889--53356027	46	3.0	46	91	0	224	36	10	23	28	1.89
53365160--53365256	49	2.0	48	87	2	140	42	21	14	21	1.88
53366530--53366581	22	2.3	24	83	12	74	67	5	1	25	1.23
53366928--53366995	32	2.2	29	75	17	57	48	5	4	41	1.47
53368743--53368792	25	2.0	24	81	14	57	66	0	4	30	1.10
53371262--53371296	16	2.2	16	89	0	52	40	2	31	25	1.70
53371651--53371716	29	2.2	29	82	15	73	27	3	6	63	1.32
53371664--53371727	29	2.2	29	83	10	78	31	3	4	60	1.32
53385524--53385634	19	5.8	19	87	8	163	38	9	14	36	1.79
53386371--53386424	24	2.3	24	90	3	83	31	5	3	59	1.38
53387080--53387272	96	2.0	98	94	2	345	27	9	25	36	1.88
53392994--53393032	19	2.0	20	95	5	71	92	5	0	2	0.46
53392994--53393032	1	39.0	1	84	0	51	92	5	0	2	0.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53392994--53393027	10	3.5	10	92	8	61	94	5	0	0	0.32
53394273--53394558	131	2.2	128	90	6	434	29	19	26	24	1.98
53409190--53409274	40	2.1	40	82	8	102	36	20	21	22	1.95
53409590--53409650	22	2.9	21	76	11	61	19	0	37	42	1.52
53409590--53409724	7	17.9	7	69	14	72	15	0	38	45	1.46
53409602--53409724	15	8.0	15	70	13	72	14	0	40	44	1.45
53409595--53409665	36	1.9	38	85	5	101	18	0	39	42	1.50
53410236--53410325	43	2.1	43	87	4	128	26	14	27	31	1.95
53410242--53410340	43	2.3	43	80	3	110	25	17	26	31	1.97
53410817--53410845	5	5.8	5	100	0	58	37	0	0	62	0.96
53417730--53417784	17	3.3	16	82	7	58	38	1	7	52	1.40
53417736--53417784	17	2.8	18	84	9	66	36	2	8	53	1.43
53420611--53420639	10	2.7	11	94	5	51	31	31	0	37	1.58
53421720--53421751	11	2.9	11	95	0	55	40	0	31	28	1.57
53422256--53422333	30	2.7	30	92	5	126	52	5	3	38	1.42
53422347--53422408	32	1.9	32	100	0	124	37	14	3	45	1.61
53422994--53423053	28	2.1	28	81	6	68	41	1	1	55	1.20
53423635--53423682	19	2.5	19	81	18	55	58	0	8	33	1.28
53426922--53426978	23	2.5	23	88	2	80	52	1	1	43	1.21
53426954--53426993	16	2.5	16	87	0	53	47	5	7	40	1.54
53427066--53427093	9	3.1	9	100	0	56	32	0	10	57	1.33
53426983--53427191	68	3.1	68	95	1	359	41	4	9	45	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53427258--53427301	24	1.9	24	90	9	74	61	2	0	36	1.09
53428532--53428585	16	3.0	19	73	15	60	35	0	18	46	1.50
53429792--53429976	46	4.0	46	87	2	255	36	9	23	30	1.86
53431779--53431909	39	3.4	38	77	7	120	37	1	0	61	1.06
53431832--53431913	11	7.9	11	77	22	97	45	0	0	54	0.99
53431824--53431913	29	3.0	29	87	8	119	43	0	0	56	0.99
53431843--53431878	18	2.0	18	100	0	72	44	0	0	55	0.99
53431868--53431893	13	2.0	13	100	0	52	46	0	0	53	1.00
53435782--53435849	30	2.2	31	84	2	84	26	17	7	48	1.73
53436004--53436048	23	2.0	23	95	0	81	28	8	22	40	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214