Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  133  of  214  ( 25680 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40350580--40350841
88
3.0
88
81
4
332
22
22
24
29
1.99
40352062--40352113
6
8.0
6
81
10
50
15
15
0
69
1.20
40352061--40352102
7
6.1
7
89
10
61
14
14
0
71
1.15
40352053--40352111
27
2.2
27
84
3
84
15
13
0
71
1.15
40352064--40352111
20
2.5
20
86
10
64
14
14
0
70
1.16
40352061--40352113
27
2.0
27
92
0
88
15
15
0
69
1.19
40353026--40353095
29
2.4
28
76
6
68
11
10
4
74
1.20
40357919--40357954
18
2.1
18
89
5
56
61
0
2
36
1.11
40364306--40364349
23
1.9
22
82
17
54
38
22
0
38
1.55
40364448--40364523
23
3.3
23
94
0
134
31
23
21
23
1.98
40369223--40369483
94
2.8
93
78
9
271
32
18
23
25
1.97
40373744--40373859
42
2.8
41
89
2
178
31
20
18
28
1.97
40381475--40381532
30
1.9
30
82
6
73
27
13
3
55
1.55
40384380--40384415
4
9.0
4
93
0
63
47
25
2
25
1.65
40388594--40388622
6
4.8
6
100
0
58
0
0
34
65
0.93
40393295--40393353
10
6.1
10
78
7
50
33
0
6
59
1.24
40393306--40393360
28
2.0
28
85
0
74
41
0
5
52
1.24
40397184--40397230
20
2.4
19
85
3
58
44
10
8
36
1.70
40398187--40398223
9
4.1
9
92
0
65
45
13
10
29
1.77
40398593--40398635
19
2.4
18
85
11
54
27
25
0
46
1.53
40404395--40404491
34
2.8
34
83
7
124
18
23
24
32
1.97
40404402--40404511
35
3.2
36
81
11
131
18
22
25
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40412513--40412547
18
2.0
18
88
5
54
40
28
2
28
1.71
40416154--40416201
25
2.0
24
83
4
60
37
20
25
16
1.93
40422117--40422154
20
1.9
19
89
5
58
31
2
23
42
1.68
40424370--40424426
22
2.6
22
72
10
53
15
17
8
57
1.63
40427295--40427351
7
7.4
7
81
18
69
40
1
0
57
1.09
40428227--40428280
25
2.2
24
80
9
63
57
9
0
33
1.31
40432968--40433034
31
2.3
27
78
14
71
40
10
8
40
1.71
40435102--40435127
11
2.4
11
100
0
52
26
0
0
73
0.84
40440309--40440347
15
2.5
15
95
4
69
46
5
15
33
1.68
40452534--40452564
16
2.0
16
93
6
55
48
12
6
32
1.67
40478744--40478796
23
2.4
22
75
9
54
9
18
1
69
1.25
40487175--40487200
3
8.7
3
100
0
52
30
0
0
69
0.89
40499785--40499824
12
3.5
12
90
6
57
37
0
2
60
1.11
40501691--40501741
20
2.4
21
80
12
59
64
7
0
27
1.21
40501693--40501735
20
2.1
21
86
4
61
67
9
0
23
1.19
40510242--40510285
21
2.0
22
95
4
81
70
0
11
18
1.16
40511234--40511300
21
3.2
22
76
18
72
34
8
1
55
1.40
40511270--40511346
3
24.3
3
75
7
64
32
3
3
59
1.34
40517572--40517686
44
2.6
44
83
5
126
29
19
21
29
1.97
40517490--40517798
138
2.2
138
84
4
392
33
17
21
27
1.96
40517605--40517697
44
2.1
44
83
0
123
31
17
23
27
1.97
40517613--40518107
94
5.3
93
80
5
478
34
19
18
27
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40517650--40518121
189
2.5
187
83
5
576
35
19
18
26
1.94
40517710--40518121
188
2.2
189
84
3
537
35
19
17
26
1.94
40518660--40518725
31
2.2
31
86
8
91
60
13
22
3
1.47
40519257--40519285
13
2.3
13
94
5
51
34
0
3
62
1.12
40534167--40534243
27
2.7
27
84
9
84
58
3
7
29
1.44
40534165--40534220
3
17.7
3
78
10
58
64
0
7
28
1.20
40536505--40536553
18
2.7
18
78
15
55
38
2
6
53
1.38
40537670--40537703
15
2.3
15
89
0
50
35
0
2
61
1.11
40538584--40538622
20
2.0
20
84
0
51
43
7
12
35
1.72
40539129--40539170
22
2.0
22
90
4
68
50
0
40
9
1.35
40548800--40549002
106
1.9
107
92
1
345
35
19
15
29
1.92
40549865--40549930
28
2.4
27
79
20
84
59
1
3
36
1.22
40549866--40549924
28
2.1
28
87
12
86
61
1
3
33
1.23
40550096--40550143
3
16.3
3
93
4
71
68
27
0
4
1.07
40553430--40553457
14
2.0
14
100
0
56
57
14
0
28
1.38
40558414--40558464
21
2.5
21
79
20
63
74
7
1
15
1.13
40558823--40558852
16
1.9
16
93
6
53
56
3
20
20
1.56
40564543--40564582
20
2.0
20
85
4
55
32
7
15
45
1.74
40571821--40572182
44
7.8
45
74
13
256
34
18
17
28
1.94
40571821--40572178
95
3.9
89
77
7
263
34
18
18
28
1.95
40571861--40572182
95
3.4
94
80
7
334
35
18
17
29
1.94
40571991--40572182
51
3.9
51
72
12
175
35
18
15
30
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40573766--40573864
4
24.8
4
74
15
80
23
8
0
68
1.15
40578531--40578555
9
2.8
9
100
0
50
68
8
0
24
1.16
40583434--40583478
9
5.0
9
83
0
54
46
20
8
24
1.78
40585459--40585504
3
15.3
3
100
0
92
67
0
0
32
0.91
40586079--40586110
10
3.2
10
95
0
55
37
0
12
50
1.41
40586078--40586107
14
2.1
14
93
0
51
40
0
10
50
1.36
40591035--40591086
25
2.1
25
96
0
95
44
9
26
19
1.81
40593781--40593824
11
3.8
11
80
11
52
31
0
4
63
1.14
40595772--40596036
33
7.9
33
70
7
149
30
15
25
29
1.95
40595742--40596046
101
3.0
101
91
0
493
31
15
25
28
1.95
40596537--40596639
9
11.4
9
90
0
143
41
26
8
23
1.83
40596743--40596789
18
2.6
18
86
0
67
17
2
40
40
1.61
40604503--40604554
24
2.2
24
89
0
77
55
9
1
32
1.43
40606472--40606523
24
2.2
24
89
0
77
55
9
1
32
1.43
40608061--40608105
21
2.0
23
83
8
58
20
17
48
13
1.80
40608061--40608112
21
2.5
22
79
14
56
17
17
51
13
1.76
40614926--40615171
41
5.8
41
68
11
145
28
23
20
27
1.99
40615047--40615135
46
1.9
46
88
0
133
26
25
20
26
1.99
40614919--40615453
174
3.1
174
87
2
756
27
22
20
30
1.98
40615280--40615434
43
3.6
42
74
10
127
28
22
20
28
1.99
40615183--40615433
44
5.8
44
73
10
194
27
21
20
29
1.98
40614966--40615434
87
5.4
87
70
13
288
27
22
19
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40616756--40616796
1
41.0
1
100
0
82
0
0
0
100
0.00
40627677--40627732
22
2.5
22
76
0
58
50
7
12
30
1.67
40628128--40628168
15
2.8
16
79
20
54
60
0
7
31
1.24
40629666--40629706
19
2.3
19
80
12
52
51
2
0
46
1.14
40630973--40631018
16
2.7
17
80
6
58
69
4
6
19
1.28
40630981--40631011
8
3.8
8
95
4
53
74
0
9
16
1.07
40631413--40631470
21
2.7
22
81
7
84
36
0
0
63
0.94
40643487--40643649
46
3.6
46
93
1
267
33
15
22
28
1.95
40657505--40657530
12
2.2
12
100
0
52
30
7
0
61
1.24
40657828--40657868
16
2.5
17
80
15
50
36
0
2
60
1.10
40658830--40658900
27
2.6
29
88
6
112
40
14
0
45
1.44
40659060--40659149
4
20.2
4
76
18
65
66
0
33
0
0.92
40659060--40659149
16
6.4
14
79
14
80
66
0
33
0
0.92
40659080--40659181
16
6.9
15
74
22
76
67
0
32
0
0.91
40659059--40659155
22
4.7
21
67
27
66
64
0
35
0
0.93
40659064--40659179
39
3.0
38
77
18
107
66
0
33
0
0.92
40659063--40659180
18
6.1
18
66
24
53
66
0
33
0
0.92
40659060--40659183
60
2.0
61
83
11
157
66
0
33
0
0.92
40659083--40659182
44
2.3
44
85
11
129
68
0
32
0
0.90
40659213--40659250
19
2.0
19
85
10
51
31
0
7
60
1.25
40660768--40660794
10
2.7
10
100
0
54
18
11
48
22
1.79
40664579--40664615
12
3.1
12
92
0
56
62
16
0
21
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40664850--40664887
3
12.7
3
100
0
76
68
31
0
0
0.90
40664963--40665001
20
2.0
21
85
10
55
66
10
0
23
1.22
40665238--40665311
28
2.7
28
93
6
125
44
0
12
43
1.41
40674088--40674142
28
2.0
27
82
3
65
61
0
5
32
1.19
40679840--40679929
36
2.6
33
75
15
83
41
0
0
58
0.98
40681582--40681647
31
2.1
32
88
2
98
48
4
12
34
1.61
40684321--40684399
4
19.8
4
100
0
158
25
0
25
49
1.51
40688650--40688964
161
2.0
155
88
3
459
32
13
15
38
1.87
40691243--40691277
18
1.9
18
88
0
52
25
54
0
20
1.45
40691256--40691515
57
4.7
57
77
9
270
28
45
4
22
1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214