genome.fa.s25.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  35  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9680163--9680495	97	3.4	97	98	0	648	38	6	13	41	1.71
9684945--9684984	21	1.9	21	94	0	71	25	27	32	15	1.95
9685245--9685803	125	4.5	125	84	6	692	30	15	22	30	1.95
9685550--9685770	118	1.9	116	88	3	336	33	14	21	30	1.93
9688977--9689302	21	15.0	22	78	5	317	25	1	26	46	1.62
9688977--9689399	43	9.6	43	75	10	304	25	1	26	46	1.62
9688977--9689294	64	4.9	64	77	6	311	25	1	26	45	1.62
9689255--9689369	37	3.1	37	71	21	123	23	1	27	46	1.62
9689267--9689326	7	8.1	7	75	14	50	20	3	35	41	1.68
9689213--9689376	74	2.2	74	87	1	240	24	1	28	46	1.60
9689319--9689399	22	3.7	22	78	3	92	25	0	25	48	1.52
9689331--9689398	21	3.2	21	87	2	100	25	0	25	50	1.50
9690869--9690906	20	1.9	20	84	10	51	57	7	0	34	1.28
9692198--9692246	21	2.5	20	83	6	55	32	6	8	53	1.55
9701310--9701341	16	2.0	16	93	0	55	21	12	28	37	1.90
9705695--9705886	28	6.8	27	76	9	154	20	10	5	62	1.48
9705695--9705858	87	1.9	85	81	7	197	20	10	6	62	1.49
9705703--9705886	56	3.2	55	81	7	199	21	11	5	61	1.49
9713586--9713638	27	2.0	27	85	7	72	37	9	11	41	1.73
9715569--9715617	25	2.0	25	84	8	64	48	0	4	46	1.20
9717263--9717441	43	4.2	43	89	0	234	29	30	17	22	1.97
9721322--9721369	23	2.0	24	84	8	62	27	6	8	58	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9721927--9722004	7	11.0	7	83	1	66	34	44	0	20	1.52
9721916--9722006	21	4.2	21	81	9	94	37	42	0	19	1.52
9721950--9722027	21	3.7	21	85	1	84	39	38	0	21	1.54
9722697--9722733	7	5.1	7	87	6	56	45	29	0	24	1.53
9722690--9722738	14	3.3	15	82	8	64	48	28	0	22	1.50
9723215--9723254	21	1.9	21	89	0	62	37	37	0	25	1.56
9723391--9723546	41	3.8	41	87	0	222	25	26	22	25	2.00
9723531--9723653	40	3.2	39	78	8	135	21	17	19	41	1.90
9726743--9726769	13	2.1	13	100	0	54	33	0	7	59	1.25
9732496--9732697	35	5.5	35	67	15	138	20	22	22	34	1.97
9732485--9732756	75	3.6	75	85	0	364	21	23	22	33	1.97
9735057--9735116	26	2.4	25	83	5	68	23	8	6	61	1.48
9735462--9735498	2	19.5	2	89	10	60	51	0	0	48	1.00
9736826--9736919	48	2.0	48	87	8	138	40	27	12	19	1.88
9739338--9739431	48	2.0	48	87	8	138	40	27	12	19	1.88
9742101--9742125	7	3.6	7	100	0	50	12	0	0	88	0.53
9742181--9742222	16	2.6	16	81	11	50	35	0	0	64	0.94
9744903--9744948	24	1.9	24	90	0	74	26	10	19	43	1.84
9748658--9748725	10	6.8	10	72	11	59	61	2	1	33	1.20
9748691--9748731	19	2.1	19	86	9	55	70	0	0	29	0.87
9748656--9748725	30	2.3	29	74	11	70	60	2	1	35	1.21
9748708--9748737	14	2.1	15	93	6	53	73	0	0	26	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9752050--9752124	20	3.7	19	77	13	69	72	1	21	5	1.13
9759309--9759355	24	2.0	24	84	16	62	51	17	0	31	1.46
9760095--9760164	23	2.9	24	77	14	81	51	2	0	45	1.16
9760108--9760164	25	2.4	22	78	16	60	52	3	0	43	1.18
9761422--9761454	16	2.0	17	88	5	50	18	6	0	75	1.00
9761487--9761523	16	2.3	17	86	9	51	16	21	0	62	1.33
9768640--9768696	21	2.7	22	78	13	57	24	24	38	12	1.90
9770522--9770735	106	2.0	106	92	0	356	31	18	17	33	1.94
9771375--9771423	23	2.1	24	84	3	64	12	14	2	71	1.23
9772277--9772324	14	3.5	13	86	8	60	27	2	4	66	1.21
9772381--9772437	20	2.8	20	83	0	69	29	8	5	56	1.52
9776068--9776142	8	9.2	8	79	13	82	81	8	0	10	0.88
9776062--9776116	19	2.9	18	86	10	74	80	9	0	10	0.92
9776065--9776139	27	3.0	26	88	9	104	82	6	0	10	0.83
9776068--9776135	35	1.9	35	88	5	102	82	7	0	10	0.85
9776076--9776135	19	3.3	18	75	13	61	83	6	0	10	0.81
9776158--9776190	16	2.1	16	94	5	59	84	0	15	0	0.61
9776972--9777052	8	10.2	8	77	15	80	72	0	14	12	1.11
9776973--9777052	15	5.1	15	77	15	74	72	0	15	12	1.12
9776972--9777052	23	3.5	22	79	14	83	72	0	14	12	1.11
9778307--9779121	88	9.4	88	91	2	1075	27	22	24	25	2.00
9779260--9779820	50	11.2	50	80	5	591	31	21	20	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9779247--9779968	100	7.2	100	89	1	932	32	21	19	26	1.97
9779247--9779968	299	2.4	300	86	2	979	32	21	19	26	1.97
9779307--9779991	50	13.7	50	74	11	451	31	22	19	25	1.98
9780928--9780976	23	2.1	24	84	3	64	12	14	2	71	1.23
9781831--9781878	14	3.5	13	86	8	60	27	2	4	66	1.21
9781935--9781991	20	2.8	20	83	0	69	29	8	5	56	1.52
9782964--9783007	19	2.4	19	88	3	63	70	0	6	22	1.11
9783064--9783090	14	1.9	14	100	0	54	66	3	0	29	1.09
9792918--9792947	10	2.8	11	90	10	53	10	6	6	76	1.15
9797505--9797544	20	2.0	20	100	0	80	30	25	15	30	1.95
9805616--9806527	100	9.1	100	96	0	1542	30	20	23	24	1.99
9807613--9807641	10	2.7	11	94	5	51	13	6	0	79	0.93
9813102--9813304	102	2.0	102	90	3	320	27	17	31	24	1.97
9814496--9814523	13	2.2	13	100	0	56	53	0	0	46	1.00
9817416--9817440	12	2.1	12	100	0	50	16	40	36	8	1.77
9819124--9819158	18	1.9	18	88	0	52	54	2	0	42	1.15
9826510--9826555	19	2.5	19	89	10	69	30	2	0	67	1.03
9826521--9826577	19	2.9	19	82	10	53	36	3	0	59	1.14
9826520--9826577	20	2.9	20	84	5	64	36	3	0	60	1.14
9827183--9827261	29	2.7	29	84	4	86	26	12	11	49	1.75
9827444--9827500	25	2.2	27	78	12	66	70	5	8	15	1.31
9831686--9831738	22	2.4	21	84	6	61	35	15	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9834233--9834293	25	2.4	25	83	0	77	27	18	29	24	1.98
9834221--9834314	25	3.8	24	75	13	66	32	15	28	22	1.95
9835418--9835448	13	2.4	13	94	0	53	22	0	3	74	0.96
9835443--9835488	8	5.8	8	82	14	51	50	2	0	47	1.13
9837396--9837432	20	2.0	19	85	15	51	37	8	0	54	1.30
9839811--9839850	20	2.0	20	85	0	53	10	20	22	47	1.79
9846861--9846934	34	2.1	35	83	14	91	29	9	21	39	1.85
9854410--9854470	32	1.9	32	89	0	95	19	19	40	19	1.91
9855708--9855773	25	2.7	25	83	4	73	19	24	21	34	1.96
9855732--9855778	25	1.9	25	91	4	78	17	25	19	38	1.92
9855707--9855784	24	3.2	24	77	15	79	20	25	20	33	1.97
9855900--9855957	25	2.4	24	86	11	82	15	27	24	32	1.95
9855946--9856057	25	4.5	25	76	11	97	21	25	20	33	1.97
9857898--9857989	24	3.8	24	74	8	62	16	30	20	32	1.95
9859404--9859433	8	3.8	8	95	0	51	40	0	13	46	1.43
9860332--9860436	20	5.4	19	70	11	79	20	17	8	54	1.68
9860327--9860447	39	3.1	39	98	0	233	20	19	7	52	1.69
9864168--9864201	6	5.5	6	86	6	50	41	58	0	0	0.98
9864167--9864202	13	2.8	13	87	4	56	38	61	0	0	0.96
9869761--9869814	17	3.1	17	84	10	65	66	3	1	27	1.19
9871065--9871115	26	2.0	26	100	0	102	37	15	3	43	1.66
9880606--9880660	20	2.8	20	77	5	58	32	9	20	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9886205--9886256	18	2.9	18	94	0	86	25	11	15	48	1.78
9889826--9889970	43	3.4	42	81	4	157	26	17	26	28	1.97
9901628--9901655	10	2.8	10	100	0	56	17	0	0	82	0.68
9903311--9903359	20	2.4	21	80	16	59	46	0	12	40	1.41
9925369--9925452	28	3.0	28	96	0	159	41	0	36	21	1.53
9926062--9926135	3	24.3	3	88	2	94	32	5	1	60	1.27
9926125--9926163	15	2.5	15	83	8	51	30	7	0	61	1.24
9927499--9927523	10	2.5	10	100	0	50	36	0	8	56	1.29
9927554--9927602	19	2.5	19	96	3	89	42	0	0	57	0.99
9927557--9927622	20	3.4	19	85	6	78	43	1	3	51	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214