genome.fa.s25.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  117  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35584007--35584037	3	10.3	3	100	0	62	32	35	0	32	1.58
35584398--35584506	29	3.8	29	85	4	141	57	11	7	22	1.59
35586386--35586415	12	2.4	13	94	5	53	20	6	6	66	1.38
35597513--35597549	10	3.6	10	92	3	56	89	5	5	0	0.60
35612878--35612907	7	4.1	7	91	8	51	16	0	0	83	0.65
35612878--35612918	15	2.7	15	88	7	57	19	0	2	78	0.87
35613755--35614833	44	23.9	44	70	10	557	28	20	18	32	1.96
35613766--35614830	137	7.9	134	72	10	482	28	20	18	32	1.97
35613809--35614787	92	10.8	89	71	13	392	28	20	18	32	1.96
35613940--35614787	92	9.4	91	73	11	483	28	20	18	32	1.96
35613765--35614292	227	2.3	228	79	3	548	26	19	20	33	1.96
35613794--35614830	181	5.7	181	85	2	1190	28	20	18	32	1.96
35613763--35614836	89	11.9	88	75	11	516	28	20	18	32	1.97
35619108--35619345	49	4.7	50	82	4	246	28	21	28	22	1.99
35619112--35619345	99	2.3	102	80	6	251	28	21	27	22	1.99
35620646--35620703	12	4.6	12	79	10	62	75	5	1	17	1.06
35620634--35620703	26	2.6	27	86	6	88	74	4	2	18	1.11
35622223--35622321	23	4.3	24	75	6	89	26	21	22	30	1.99
35622223--35622321	46	2.2	46	78	7	110	26	21	22	30	1.99
35622525--35622571	23	2.0	25	83	8	62	40	0	21	38	1.53
35629835--35629882	25	1.9	25	91	8	80	31	22	31	14	1.94
35629840--35629944	49	2.1	49	82	6	124	32	22	28	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35629910--35630054	25	5.8	25	70	16	104	32	20	26	20	1.97
35629985--35630054	26	2.8	24	80	8	77	35	21	24	18	1.95
35629974--35630076	25	4.2	25	72	18	74	33	22	24	19	1.97
35632149--35632229	26	3.3	25	75	13	78	34	23	22	19	1.96
35650056--35650106	21	2.4	21	78	15	61	68	3	9	17	1.33
35651876--35651905	13	2.3	13	94	0	51	56	6	3	33	1.42
35652586--35652620	12	2.9	12	95	0	61	0	45	22	31	1.53
35652553--35652678	66	1.9	66	81	3	155	20	33	23	23	1.97
35652595--35652778	54	3.4	54	87	2	255	19	32	22	25	1.97
35652607--35652828	108	2.1	108	82	8	265	21	31	22	24	1.98
35654721--35654769	20	2.5	20	81	15	66	12	24	4	59	1.50
35654971--35655115	50	2.9	49	82	5	168	24	25	21	28	1.99
35659654--35659759	40	2.7	40	86	4	135	41	25	18	14	1.88
35659737--35659781	21	2.1	21	95	0	81	44	15	24	15	1.85
35674519--35674543	13	1.9	13	100	0	50	24	12	16	48	1.79
35679798--35679835	19	2.0	20	84	5	51	47	18	5	28	1.70
35681577--35681639	19	3.3	19	66	25	51	50	1	7	39	1.41
35683345--35683429	45	1.9	44	85	2	116	24	28	22	24	1.99
35683356--35684026	44	15.5	44	70	8	313	27	24	18	28	1.98
35683412--35684048	174	3.7	172	87	2	911	27	23	18	29	1.98
35683404--35683986	86	6.7	85	70	6	287	28	24	19	28	1.98
35684017--35684421	129	3.1	129	93	0	666	25	22	19	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35684384--35684717	44	7.6	44	88	1	404	25	25	19	30	1.98
35684386--35684723	88	3.8	88	87	1	462	24	24	19	30	1.98
35684384--35684728	132	2.6	132	84	4	480	24	24	19	31	1.98
35685944--35685992	8	6.7	7	81	13	55	14	10	0	75	1.04
35685936--35685984	14	3.5	13	78	15	53	14	10	0	75	1.04
35685937--35685984	15	3.2	15	85	5	62	12	10	0	77	1.00
35685935--35685987	21	2.5	21	90	3	79	15	11	0	73	1.09
35685944--35685993	15	3.3	16	83	13	70	14	10	0	76	1.03
35686844--35686934	6	14.3	6	72	15	58	7	12	3	76	1.11
35686850--35686891	19	2.3	18	87	4	57	9	9	0	80	0.89
35686938--35687000	6	10.3	6	89	3	90	20	0	15	63	1.31
35686869--35686958	41	2.2	40	80	5	101	12	7	6	73	1.25
35692860--35692904	19	2.4	18	82	17	56	0	15	13	71	1.15
35696303--35696382	36	2.2	36	100	0	160	50	7	13	28	1.69
35697632--35697691	17	3.4	17	73	13	50	50	1	1	46	1.21
35700230--35700259	14	2.1	14	93	0	51	33	0	0	66	0.92
35702199--35702340	34	4.2	33	82	0	158	33	11	13	41	1.81
35702202--35702335	68	2.0	67	86	1	187	34	11	12	41	1.80
35702243--35702351	34	3.2	33	88	2	146	33	14	11	39	1.83
35702220--35702351	67	2.0	68	83	4	169	34	13	12	39	1.82
35702429--35702590	45	3.6	45	76	1	173	27	16	21	35	1.94
35702618--35702660	22	2.0	22	85	0	59	32	18	16	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35703503--35703536	17	2.0	17	88	11	52	52	14	5	26	1.64
35707247--35707330	32	2.6	32	81	5	107	27	2	19	51	1.59
35708220--35708272	26	2.0	26	100	0	106	50	11	15	22	1.75
35708764--35708801	19	2.0	19	94	0	67	55	15	5	23	1.61
35709294--35709352	7	8.3	7	74	23	52	62	0	0	37	0.95
35709291--35709359	35	2.0	35	86	11	97	65	0	0	34	0.93
35709445--35709506	9	6.6	9	76	12	54	67	3	4	24	1.25
35709445--35709506	28	2.2	28	94	2	106	67	3	4	24	1.25
35710000--35710037	18	2.1	18	90	0	58	34	0	0	65	0.93
35710000--35710036	19	2.0	18	89	5	56	32	0	0	67	0.91
35710314--35710341	14	2.0	14	100	0	56	7	14	50	28	1.69
35714281--35714389	34	3.2	34	84	0	137	34	11	11	43	1.75
35715815--35715852	20	2.0	20	84	5	51	31	2	5	60	1.33
35717850--35717932	36	2.3	36	83	4	87	30	10	25	33	1.90
35723729--35723800	35	2.0	36	89	2	110	27	9	25	37	1.87
35724217--35724332	40	2.9	40	87	3	155	32	21	23	22	1.98
35724216--35724352	40	3.4	40	82	6	143	36	20	22	20	1.95
35724369--35724562	41	4.7	41	83	1	219	24	21	23	30	1.99
35725035--35725069	7	5.0	7	85	0	52	20	0	51	28	1.47
35725098--35725229	63	2.1	63	94	0	228	31	0	21	47	1.51
35725616--35725651	18	2.0	18	94	0	63	44	13	16	25	1.85
35725617--35725653	9	4.1	9	85	0	56	45	13	13	27	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35727365--35727651	147	2.0	144	85	4	389	40	14	12	32	1.83
35731144--35731177	4	8.0	4	90	9	50	23	0	2	73	0.97
35731127--35731186	22	2.7	22	73	19	61	26	0	6	66	1.16
35732121--35732154	4	8.0	4	90	9	50	23	0	2	73	0.97
35732104--35732163	22	2.7	22	73	19	61	26	0	6	66	1.16
35733098--35733131	4	8.0	4	90	9	50	23	0	2	73	0.97
35733081--35733140	22	2.7	22	73	19	61	26	0	6	66	1.16
35734076--35734109	4	8.0	4	90	9	50	23	0	2	73	0.97
35734059--35734118	22	2.7	22	73	19	61	26	0	6	66	1.16
35731006--35739798	978	9.0	978	99	0	17480	27	16	16	39	1.90
35735054--35735087	4	8.0	4	90	9	50	23	0	2	73	0.97
35735037--35735096	22	2.7	22	73	19	61	26	0	6	66	1.16
35736032--35736065	4	8.0	4	90	9	50	23	0	2	73	0.97
35736015--35736074	22	2.7	22	73	19	61	26	0	6	66	1.16
35737008--35737041	4	8.0	4	90	9	50	23	0	2	73	0.97
35736991--35737050	22	2.7	22	73	19	61	26	0	6	66	1.16
35737986--35738019	4	8.0	4	90	9	50	23	0	2	73	0.97
35737969--35738028	22	2.7	22	73	19	61	26	0	6	66	1.16
35738962--35738995	4	8.0	4	90	9	50	23	0	2	73	0.97
35738945--35739004	22	2.7	22	73	19	61	26	0	6	66	1.16
35741293--35741344	27	1.9	27	88	0	77	63	1	26	7	1.32
35742745--35742778	4	8.0	4	90	9	50	23	0	2	73	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35742728--35742787	22	2.7	22	73	19	61	26	0	6	66	1.16
35744493--35744695	43	4.7	43	81	0	228	21	18	30	30	1.97
35747655--35747926	68	4.0	68	85	1	330	36	17	22	24	1.95
35755909--35756084	27	6.5	27	83	5	185	30	28	14	26	1.95
35756561--35756586	12	2.2	12	100	0	52	42	0	7	50	1.31
35780587--35780703	25	4.7	25	75	11	89	30	20	20	28	1.98
35780647--35780728	25	3.3	24	78	11	94	34	15	23	26	1.95
35780642--35780718	25	3.1	25	81	10	95	31	19	22	27	1.98
35783026--35783094	32	2.2	32	81	5	77	21	10	13	55	1.67
35786170--35786910	369	2.0	369	96	0	1365	27	19	14	38	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214