genome.fa.s25.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  122  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37016839--37016976	55	2.5	55	84	3	170	33	24	14	27	1.94
37017094--37017193	52	1.9	53	81	6	123	31	21	10	38	1.86
37017080--37017284	53	3.9	51	74	5	160	29	21	12	35	1.91
37022265--37022449	50	3.7	50	78	9	155	23	18	25	31	1.97
37022265--37022448	101	1.8	101	84	4	255	23	18	26	31	1.97
37025314--37025417	49	2.1	51	84	10	135	27	16	5	50	1.68
37039741--37039911	27	6.3	26	85	4	189	42	19	16	20	1.89
37039741--37039910	81	2.1	81	86	4	236	42	20	16	20	1.89
37040072--37040152	26	3.1	26	85	0	117	23	17	19	39	1.92
37050579--37050623	6	7.2	6	80	9	54	28	0	0	71	0.87
37063153--37063269	45	2.6	45	79	0	117	36	17	20	25	1.94
37068973--37069046	25	3.0	25	79	0	76	27	21	20	31	1.98
37070629--37070811	101	1.8	102	87	3	280	24	19	26	30	1.98
37071037--37071068	16	2.0	16	93	0	55	59	0	15	25	1.36
37073074--37073103	15	2.0	15	93	0	51	50	0	20	30	1.49
37088646--37088765	53	2.3	53	98	0	231	20	28	22	28	1.99
37088672--37088849	53	3.3	53	81	9	175	21	26	24	27	1.99
37090976--37091030	10	5.3	10	80	8	56	30	1	9	58	1.40
37125732--37125764	15	2.2	15	100	0	66	24	27	12	36	1.91
37127700--37127830	65	2.0	65	89	0	199	25	15	29	30	1.96
37131614--37131702	45	2.0	44	82	2	106	23	26	23	25	2.00
37131596--37132698	44	25.2	44	67	10	268	26	23	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37131844--37132140	129	2.3	129	82	6	327	26	20	22	30	1.98
37131888--37132166	129	2.2	129	81	3	330	27	21	21	29	1.99
37131682--37132395	348	2.1	347	86	2	986	27	22	20	29	1.98
37131682--37132609	348	2.7	345	80	5	791	26	23	20	29	1.99
37132030--37132853	437	1.9	437	81	4	1000	26	24	20	29	1.99
37132013--37132872	218	3.9	218	84	2	962	26	23	20	29	1.99
37135202--37135236	13	2.8	12	87	8	52	0	20	0	80	0.72
37135261--37135308	19	2.5	19	83	10	62	6	10	0	83	0.81
37135242--37135337	25	3.7	25	79	10	86	10	5	6	78	1.09
37135260--37135329	33	2.1	34	84	7	90	8	7	2	81	0.96
37135261--37135309	20	2.5	19	86	3	71	6	10	0	83	0.80
37135280--37135340	13	4.7	13	78	11	54	11	3	4	80	0.99
37135299--37135333	18	1.9	18	88	11	54	14	2	8	74	1.17
37135281--37135344	26	2.5	25	85	5	83	12	3	6	78	1.06
37144836--37144884	3	16.3	3	100	0	98	67	0	0	32	0.91
37159221--37159522	40	7.6	40	86	4	326	26	28	20	24	1.99
37159219--37159522	119	2.5	119	82	5	346	26	28	20	24	1.99
37159454--37159531	40	1.9	41	82	10	97	26	28	20	24	1.99
37168160--37168380	40	5.6	40	85	3	232	24	21	28	25	1.99
37168235--37168416	79	2.3	80	81	4	210	25	20	28	25	1.99
37170508--37170574	27	2.5	26	72	11	64	43	4	0	52	1.21
37170515--37170576	27	2.3	27	75	8	65	40	4	0	54	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37171922--37172041	58	2.1	58	100	0	240	35	6	22	35	1.81
37178330--37178363	16	2.2	15	94	5	59	47	0	0	52	1.00
37183092--37183841	383	2.0	378	84	4	995	35	17	11	35	1.86
37189935--37189995	27	2.3	27	79	0	68	26	13	31	29	1.93
37196445--37196497	17	3.2	17	79	15	74	28	15	9	47	1.76
37209192--37209240	21	2.5	20	83	6	55	40	10	12	36	1.77
37214780--37214842	20	3.2	20	71	8	65	11	33	17	38	1.85
37214880--37214943	20	3.2	20	68	0	56	12	35	20	31	1.90
37214744--37214994	40	6.3	40	86	0	331	15	29	17	37	1.91
37221075--37221139	20	3.2	20	61	8	51	13	32	13	40	1.85
37221041--37221250	79	2.6	79	79	0	213	17	30	14	38	1.89
37221036--37221250	40	5.4	40	79	1	225	16	31	13	38	1.88
37221645--37221669	13	1.9	13	100	0	50	32	32	16	20	1.94
37228193--37228304	28	4.0	28	80	3	127	26	19	13	40	1.89
37238689--37238756	29	2.3	29	89	0	109	16	10	26	47	1.78
37238831--37239038	29	7.2	29	78	1	177	25	15	24	34	1.95
37238831--37239054	58	3.9	58	81	1	227	26	15	23	34	1.94
37238915--37239054	29	4.9	29	83	0	156	25	15	23	35	1.94
37245401--37245431	12	2.6	12	100	0	62	35	0	41	22	1.54
37247218--37247244	13	2.1	13	100	0	54	51	0	11	37	1.37
37247297--37247387	43	2.1	43	100	0	182	49	16	0	34	1.46
37247354--37247414	27	2.3	27	97	0	113	47	14	1	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37254537--37254714	27	6.6	27	83	3	205	26	15	28	29	1.96
37254538--37254693	82	1.9	81	88	3	233	26	15	28	29	1.96
37254534--37254714	82	2.2	81	83	2	229	27	15	27	29	1.96
37256725--37256874	43	3.5	43	80	5	162	25	16	28	30	1.97
37260327--37260364	6	6.0	6	88	11	58	18	0	2	78	0.86
37262489--37262529	17	2.4	18	84	12	59	14	26	0	58	1.37
37265610--37266184	49	12.1	49	92	3	887	32	9	29	29	1.88
37265613--37266182	96	6.0	96	92	3	872	31	9	29	29	1.88
37266303--37266381	37	2.1	37	88	4	115	24	20	30	25	1.98
37268083--37268185	43	2.4	43	95	0	188	23	13	35	27	1.92
37268167--37268240	29	2.6	29	91	0	112	27	16	31	25	1.96
37268555--37268694	39	3.5	40	80	10	144	26	22	27	22	1.99
37268669--37268825	40	3.9	40	89	0	233	23	21	29	25	1.99
37272145--37272575	49	9.0	49	92	4	711	32	9	29	29	1.89
37272148--37272575	96	4.5	95	94	2	732	31	9	29	29	1.89
37272739--37272817	37	2.1	37	88	4	115	24	20	30	25	1.98
37282944--37282979	16	2.2	17	90	5	56	11	52	0	36	1.37
37294536--37294904	185	2.0	185	98	0	711	33	8	15	42	1.77
37299875--37299921	21	2.2	22	92	3	78	21	19	38	21	1.94
37302017--37302209	67	3.0	65	72	19	186	43	3	4	49	1.39
37302081--37302181	29	3.4	29	65	22	73	41	4	2	50	1.39
37302086--37302201	61	1.9	58	86	5	160	43	3	3	50	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37302088--37302222	58	2.3	60	82	8	152	43	3	4	48	1.41
37302199--37302261	32	2.0	32	100	0	126	41	3	12	42	1.59
37305461--37305496	18	1.9	19	94	5	65	52	0	2	44	1.15
37310285--37310323	20	1.9	21	84	5	53	58	7	5	28	1.47
37311588--37311659	26	2.8	26	87	6	76	15	6	38	38	1.74
37311600--37311659	26	2.3	26	91	5	95	16	5	36	41	1.70
37312007--37312128	44	2.8	44	80	7	140	30	24	17	27	1.97
37312008--37312215	44	4.7	44	71	10	131	25	25	20	28	1.99
37312287--37312710	129	3.3	129	87	2	609	25	23	19	32	1.98
37313983--37314013	13	2.3	13	94	5	53	12	12	0	74	1.08
37313983--37314013	7	4.6	7	92	8	55	12	12	0	74	1.08
37319019--37319067	23	2.1	23	100	0	98	34	14	24	26	1.94
37324496--37324549	21	2.6	21	90	0	90	24	9	37	29	1.86
37325133--37325359	112	2.0	113	98	0	438	35	18	14	32	1.90
37331768--37331830	17	3.5	17	79	14	56	19	1	6	73	1.13
37333926--37334066	49	2.8	50	84	2	185	27	22	27	21	1.99
37343320--37343444	50	2.5	49	79	3	133	22	28	22	26	1.99
37345095--37345205	56	2.0	56	90	0	177	25	26	21	27	2.00
37348128--37348311	51	3.7	49	80	5	181	29	27	17	25	1.98
37348126--37348310	101	1.8	102	88	3	284	30	27	17	24	1.97
37348121--37348348	101	2.2	102	81	3	264	29	27	16	26	1.97
37348421--37348445	10	2.5	10	100	0	50	8	20	0	72	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37351015--37351096	42	2.0	42	87	4	121	30	24	15	29	1.96
37353629--37353659	16	1.9	16	93	0	53	19	16	3	61	1.48
37353888--37354023	50	2.7	51	81	4	159	29	29	16	24	1.97
37359672--37359703	16	2.0	16	93	0	55	25	15	0	59	1.36
37359928--37360071	50	2.9	50	79	5	164	30	28	14	26	1.95
37361209--37361748	268	2.0	268	99	0	1071	34	15	18	31	1.91
37369548--37369590	19	2.3	18	81	18	52	16	2	6	74	1.14
37371411--37371466	20	2.8	20	86	0	76	10	25	23	41	1.86
37374036--37374066	16	1.9	16	93	0	53	35	0	9	54	1.33
37374035--37374073	16	2.4	16	82	4	51	33	0	7	58	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214