genome.fa.s25.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  166  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49089061--49089488	100	4.3	100	88	2	578	47	17	3	31	1.63
49094107--49094242	66	2.1	66	90	2	211	41	17	26	14	1.88
49094590--49094679	43	2.1	43	85	4	119	24	17	30	27	1.97
49098824--49098899	4	18.5	4	87	5	98	47	19	1	31	1.58
49098824--49098926	34	3.1	34	83	2	111	45	16	1	35	1.59
49098817--49098933	30	4.0	30	79	6	107	42	14	2	40	1.59
49098988--49099081	32	2.8	32	76	11	82	40	13	5	40	1.68
49100199--49100243	20	2.4	19	81	7	56	24	8	6	60	1.51
49107753--49107961	44	4.8	44	71	10	131	27	24	19	28	1.99
49108057--49108156	44	2.3	43	73	14	96	23	24	19	34	1.97
49108144--49108843	87	8.1	87	88	1	958	25	23	21	29	1.99
49108170--49108843	345	1.9	346	88	1	1001	25	23	21	29	1.99
49110065--49110090	13	2.0	13	100	0	52	15	15	0	69	1.20
49110476--49110567	31	3.1	30	78	7	100	11	7	9	70	1.33
49120196--49120238	17	2.5	17	96	0	77	46	23	18	11	1.82
49130820--49130886	21	3.2	20	72	8	62	20	14	10	53	1.70
49141083--49141141	26	2.2	28	80	20	72	35	0	6	57	1.25
49146125--49146174	17	2.7	20	78	18	70	10	0	44	46	1.37
49150765--49150814	17	2.7	20	78	18	70	10	0	44	46	1.37
49154612--49154662	25	1.9	27	88	11	79	43	17	3	35	1.68
49157848--49157888	16	2.3	19	88	12	61	75	2	7	14	1.12
49159823--49159866	21	2.1	21	83	8	54	50	13	2	34	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49162851--49162927	19	4.1	18	77	11	75	57	3	0	38	1.17
49162857--49162958	19	5.6	17	73	15	71	58	1	1	37	1.20
49162836--49162919	27	3.0	27	79	11	73	58	5	0	35	1.23
49162857--49162936	19	4.3	18	74	16	74	58	2	0	38	1.11
49162846--49162938	38	2.4	38	79	13	102	59	3	0	37	1.14
49162904--49162956	26	2.0	26	85	7	72	62	0	3	33	1.13
49165795--49165850	16	3.4	16	85	9	69	64	3	1	30	1.21
49165894--49165931	17	2.2	17	90	0	58	60	10	10	18	1.57
49173441--49173596	84	1.8	85	82	6	201	15	23	17	43	1.87
49173442--49173596	21	7.3	21	68	6	89	15	23	17	43	1.87
49173441--49173598	42	3.7	43	80	7	180	15	24	17	43	1.87
49174782--49174848	9	7.4	9	80	6	82	23	8	25	41	1.83
49174782--49174849	18	3.8	18	84	0	91	23	8	25	42	1.82
49174782--49174849	27	2.5	27	85	4	93	23	8	25	42	1.82
49175516--49175594	27	2.9	27	87	7	99	27	0	0	72	0.85
49175516--49175582	9	7.6	9	83	8	84	23	0	0	76	0.79
49175534--49175594	27	2.2	29	91	8	101	29	0	0	70	0.88
49175577--49175659	11	7.9	11	75	14	61	50	1	1	46	1.16
49175629--49175668	21	1.9	21	84	0	53	42	2	0	55	1.13
49184004--49184046	15	2.8	15	82	3	50	62	0	34	2	1.08
49186680--49186714	12	3.0	12	91	4	54	65	0	8	25	1.21
49187244--49187268	13	1.9	13	100	0	50	56	4	0	40	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49191074--49191128	21	2.6	22	85	8	78	27	7	38	27	1.83
49191271--49191295	13	1.9	13	100	0	50	48	0	0	52	1.00
49191292--49191330	18	2.2	18	95	4	71	58	0	0	41	0.98
49191292--49191345	19	3.0	16	82	17	54	57	1	1	38	1.20
49192913--49192941	14	2.0	15	93	6	51	41	6	6	44	1.58
49196661--49196730	33	2.1	33	91	0	113	54	7	5	32	1.51
49196670--49196740	33	2.2	33	94	0	124	49	8	8	33	1.63
49196670--49196753	33	2.5	33	88	3	98	47	9	7	35	1.64
49196953--49196985	17	1.9	17	93	0	57	78	3	0	18	0.87
49197873--49197991	60	2.0	60	93	0	202	53	13	0	32	1.40
49198526--49198593	25	2.8	25	69	18	63	58	1	0	39	1.07
49198599--49198667	36	1.9	36	96	0	129	33	15	23	27	1.95
49201199--49201241	22	2.0	22	95	0	77	46	27	2	23	1.64
49203687--49203733	20	2.2	21	85	7	60	65	6	4	23	1.33
49204215--49204248	16	2.1	16	88	0	50	38	0	8	52	1.33
49206049--49206084	17	2.0	19	89	10	58	44	0	5	50	1.25
49206196--49206240	20	2.2	21	80	11	58	66	0	4	28	1.11
49215610--49215782	91	1.9	91	83	4	224	43	14	10	31	1.79
49221689--49221726	19	2.0	19	89	0	58	52	2	0	44	1.14
49224907--49224961	27	2.2	25	80	9	58	63	1	0	34	1.05
49224909--49224970	28	2.3	25	81	13	70	62	1	0	35	1.05
49224913--49225006	40	2.3	41	78	5	120	65	1	1	31	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49225434--49225467	15	2.2	16	89	5	52	26	11	5	55	1.58
49231478--49231982	92	5.5	94	79	5	453	32	19	19	28	1.96
49231734--49231979	44	5.3	43	71	22	171	34	18	20	26	1.95
49231530--49231992	187	2.5	183	81	6	490	33	19	19	27	1.96
49231627--49232013	94	4.1	95	82	6	416	34	19	19	27	1.96
49236883--49236933	23	2.2	23	92	0	84	27	9	19	43	1.82
49237252--49237349	21	4.7	20	71	7	70	45	17	21	15	1.84
49237257--49237385	42	3.1	42	83	0	159	44	17	21	16	1.87
49237577--49237669	45	2.1	45	91	0	150	47	16	1	35	1.54
49241212--49241267	16	3.5	16	85	0	85	39	5	26	28	1.78
49241249--49241343	44	2.1	46	84	7	124	35	5	24	34	1.78
49243833--49243859	4	6.8	4	100	0	54	25	0	22	51	1.48
49245831--49245894	33	1.9	34	87	6	96	43	17	4	34	1.69
49246759--49246850	23	4.1	21	76	16	71	18	5	21	54	1.64
49246790--49246865	23	3.3	23	94	0	134	21	6	26	46	1.75
49247525--49247699	85	2.1	85	100	0	350	38	9	13	38	1.77
49248144--49248263	23	5.0	24	74	20	117	47	8	8	35	1.64
49248137--49248254	25	5.0	23	78	14	132	49	9	8	33	1.65
49248137--49248271	48	2.8	48	93	0	225	48	8	7	34	1.62
49248144--49248290	25	6.0	25	75	13	126	48	8	7	36	1.61
49248270--49248310	21	2.0	20	90	4	64	56	2	4	36	1.34
49250464--49250657	92	2.1	92	84	5	250	45	3	5	44	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49250813--49250864	15	3.6	15	80	12	56	44	0	1	53	1.11
49250688--49250977	118	2.4	119	93	4	480	42	2	4	49	1.38
49250931--49250972	15	2.9	15	82	10	52	47	0	0	52	1.00
49251084--49251118	18	2.0	17	88	5	52	45	0	0	54	0.99
49250915--49251231	157	2.0	157	95	0	562	47	4	3	43	1.41
49251354--49251389	16	2.2	16	100	0	72	38	36	0	25	1.56
49260263--49260315	27	2.0	27	85	7	72	41	0	20	37	1.53
49260627--49260749	24	5.0	24	88	1	165	40	8	27	22	1.84
49260627--49260740	25	4.6	25	91	1	169	41	8	27	22	1.83
49264105--49264140	2	18.0	2	100	0	72	50	0	50	0	1.00
49267459--49267496	18	2.1	19	90	5	60	73	0	0	26	0.83
49267421--49267498	15	5.4	15	83	14	62	66	1	2	29	1.13
49267421--49267484	3	20.3	3	84	9	67	65	1	3	29	1.17
49267456--49267498	18	2.4	17	85	11	59	72	0	0	27	0.85
49277141--49277216	33	2.5	31	78	20	79	42	0	6	51	1.28
49278693--49278733	20	2.0	21	85	4	57	24	17	9	48	1.76
49281780--49281814	18	2.0	18	88	5	54	54	0	0	45	0.99
49281760--49282075	120	2.6	118	92	3	499	48	3	3	44	1.36
49281898--49281934	16	2.2	17	86	13	51	54	0	2	43	1.14
49281795--49282075	59	4.7	59	69	20	183	48	3	3	43	1.38
49281822--49282018	63	3.2	60	70	19	165	46	5	4	43	1.47
49282015--49282090	29	2.7	29	78	8	77	52	0	1	46	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49282012--49282137	16	7.1	18	64	28	56	49	0	2	48	1.14
49282088--49282735	91	7.1	91	96	0	1156	47	3	3	45	1.39
49286623--49286676	25	2.2	25	83	6	65	12	14	16	55	1.69
49294909--49294975	31	2.2	31	86	0	89	46	8	14	29	1.76
49294916--49294984	31	2.2	31	86	0	102	44	11	13	30	1.78
49300696--49300736	21	2.0	21	90	0	64	29	21	29	19	1.98
49306056--49306228	42	4.1	42	84	2	224	30	19	20	30	1.97
49307179--49307260	4	20.5	4	100	0	164	50	25	0	24	1.50
49308332--49308361	4	7.5	4	92	0	51	46	23	3	26	1.68
49309485--49309553	32	2.2	32	83	0	84	11	24	10	53	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214