genome.fa.s25.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  177  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52020993--52021708	227	3.2	227	86	4	962	28	20	18	31	1.97
52021444--52021890	183	2.4	183	86	1	628	28	20	18	32	1.96
52021040--52021899	227	3.8	225	83	5	697	28	20	18	32	1.96
52022675--52022724	24	2.1	24	96	0	91	26	26	12	36	1.91
52023667--52023718	20	2.6	20	84	6	61	5	15	0	78	0.92
52023663--52023718	19	2.8	21	81	10	64	7	16	0	76	0.99
52023705--52023754	26	2.0	26	92	4	84	24	2	8	66	1.29
52028897--52028952	26	2.2	25	84	9	69	58	1	10	28	1.41
52030868--52030971	10	10.9	10	71	21	73	55	0	1	41	1.17
52030870--52030969	9	10.8	9	72	19	73	56	1	2	41	1.18
52030941--52030971	16	1.9	16	100	0	62	64	0	0	35	0.94
52031192--52031240	8	5.8	8	78	21	55	34	4	2	59	1.28
52040698--52040736	17	2.3	17	90	0	60	10	48	23	17	1.78
52041321--52041393	37	2.0	37	100	0	146	10	32	20	35	1.88
52041707--52041746	12	3.2	12	89	3	53	32	5	2	60	1.32
52042645--52043044	108	3.7	108	94	1	671	29	16	20	34	1.94
52047688--52047728	19	2.2	19	86	0	55	39	0	0	60	0.96
52053492--52053519	3	9.3	3	100	0	56	0	0	32	67	0.91
52054240--52054315	37	2.0	39	82	10	95	51	1	0	47	1.09
52054284--52054313	15	2.1	14	93	6	51	56	0	0	43	0.99
52054272--52054380	31	3.4	32	68	22	93	54	1	0	43	1.17
52063644--52063834	36	5.0	36	82	12	229	38	13	19	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52063608--52063923	82	3.9	81	78	10	322	36	13	21	28	1.92
52063644--52063878	118	2.0	118	93	0	398	37	14	20	28	1.91
52063803--52063925	46	2.7	46	91	6	191	32	15	23	28	1.95
52064992--52065249	35	7.7	33	81	12	251	19	23	18	39	1.93
52064986--52065249	67	3.9	65	84	9	316	18	23	17	40	1.91
52064986--52065249	102	2.6	101	89	3	388	18	23	17	40	1.91
52074270--52074349	25	3.2	25	78	0	88	20	25	17	37	1.94
52074366--52074459	24	3.9	24	69	17	68	14	25	23	36	1.93
52074423--52074541	50	2.4	50	80	5	125	26	22	18	31	1.97
52076273--52076379	25	4.3	25	77	2	81	34	21	25	18	1.96
52079349--52079505	51	3.1	50	84	6	217	31	26	15	25	1.96
52079355--52079522	51	3.3	50	81	6	196	32	26	15	26	1.96
52080686--52080717	16	1.9	17	93	6	57	43	9	0	46	1.35
52092982--52093025	16	2.8	16	86	3	63	40	0	4	54	1.21
52098866--52098965	49	2.0	49	100	0	200	28	22	14	36	1.92
52099008--52099148	43	3.3	42	79	6	124	32	25	16	25	1.96
52099021--52099152	42	3.1	42	80	5	122	33	22	17	26	1.96
52099853--52099894	12	3.5	12	75	12	50	23	42	0	33	1.55
52102048--52102088	21	1.9	22	85	14	59	68	2	4	24	1.22
52104360--52104483	55	2.3	55	95	0	221	25	33	8	32	1.85
52106519--52106603	25	3.4	25	76	14	77	18	30	21	29	1.97
52106556--52106616	25	2.4	25	80	2	77	19	24	22	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52106556--52106625	25	2.8	25	74	10	70	22	22	24	30	1.99
52108077--52108114	14	2.8	14	84	4	51	42	13	0	44	1.43
52108576--52108798	51	4.4	51	93	1	385	29	24	13	32	1.93
52108576--52108798	101	2.2	102	94	0	385	29	24	13	32	1.93
52108872--52108904	17	1.9	17	88	11	50	45	21	0	33	1.52
52115011--52115069	10	6.3	10	73	26	58	37	0	0	62	0.95
52115015--52115069	19	3.0	19	82	15	71	38	0	0	61	0.96
52115011--52115068	27	2.1	28	84	9	75	37	0	0	62	0.96
52116673--52116710	20	1.9	20	88	0	58	36	10	0	52	1.36
52124012--52124284	27	10.1	27	83	4	302	20	16	19	43	1.88
52124012--52124291	107	2.6	108	86	3	379	21	16	19	42	1.89
52127347--52127402	23	2.5	24	77	8	64	30	5	19	44	1.73
52132089--52132149	25	2.5	25	72	20	65	19	24	14	40	1.89
52139174--52139554	46	8.4	46	93	3	639	29	22	15	32	1.95
52142068--52142184	47	2.4	47	83	8	130	30	26	13	29	1.94
52143475--52143858	46	8.5	46	94	2	627	29	22	15	33	1.94
52150301--52150371	35	2.0	35	100	0	142	19	25	18	36	1.94
52154963--52155028	26	2.6	26	79	11	73	21	22	19	36	1.95
52158293--52158351	24	2.5	24	88	0	82	37	16	25	20	1.93
52158366--52158421	23	2.5	24	80	11	73	44	17	23	14	1.85
52163195--52163257	28	2.2	29	81	18	80	46	1	0	52	1.10
52178217--52178267	25	2.0	25	100	0	102	15	11	19	52	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52178292--52178342	18	2.8	18	81	3	57	68	0	0	31	0.90
52181170--52181202	15	2.1	16	88	5	50	21	0	3	75	0.93
52181168--52181207	22	1.9	22	90	10	66	20	0	2	77	0.88
52182761--52182827	21	3.2	20	72	6	53	46	17	20	14	1.84
52182747--52182827	41	2.0	41	82	2	99	45	18	20	14	1.85
52189786--52189970	46	4.0	46	92	0	298	29	26	8	35	1.86
52190435--52190480	22	2.1	22	95	0	83	30	28	8	32	1.87
52191225--52191266	17	2.6	16	88	7	66	52	21	0	26	1.47
52192182--52192284	21	4.9	20	74	7	73	45	18	19	16	1.85
52192227--52192301	21	3.6	21	78	7	82	48	18	18	14	1.82
52192182--52192310	41	3.1	44	83	10	164	44	18	19	17	1.86
52202770--52202821	27	1.9	27	92	0	86	48	7	3	40	1.50
52205561--52205641	26	3.1	26	87	0	108	20	20	23	34	1.97
52211236--52211275	21	2.0	20	85	14	55	75	5	17	2	1.10
52213290--52214223	469	2.0	469	98	0	1814	28	16	26	27	1.97
52216473--52216553	26	3.1	26	87	0	117	19	22	24	33	1.97
52216654--52216708	28	2.0	28	85	0	74	25	16	23	34	1.95
52218485--52218532	22	2.1	23	81	11	55	62	2	2	33	1.18
52218716--52218771	24	2.3	23	80	19	62	53	3	3	39	1.36
52219391--52219419	6	5.0	6	91	8	51	17	13	0	68	1.20
52220594--52220661	22	3.2	21	78	18	70	44	2	1	51	1.25
52220610--52220647	19	1.9	19	89	5	58	39	5	2	52	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52222512--52222570	17	3.4	17	73	17	66	33	3	5	57	1.37
52222843--52222880	19	2.0	19	94	0	67	34	10	21	34	1.87
52223196--52223415	41	5.3	40	77	6	172	20	23	24	32	1.98
52224418--52224477	27	2.2	28	82	8	72	46	5	6	41	1.52
52224916--52225178	116	2.3	117	80	4	291	28	17	19	34	1.94
52227892--52228018	43	2.8	43	69	16	96	42	4	4	48	1.45
52227849--52228408	213	2.6	213	99	0	1102	40	10	8	41	1.69
52228105--52228231	42	2.8	43	69	20	98	41	4	5	48	1.47
52228405--52228797	9	45.9	9	73	12	267	46	21	2	29	1.65
52228406--52228808	25	15.7	25	78	6	114	46	21	2	29	1.65
52228505--52228577	37	2.0	37	94	0	128	47	19	2	30	1.63
52228590--52228794	25	8.0	27	86	1	187	44	23	2	29	1.66
52234271--52234339	21	3.3	21	85	0	93	34	18	43	2	1.65
52234775--52235026	85	3.0	84	85	4	303	25	23	20	30	1.98
52234775--52235045	42	6.4	42	85	6	307	25	23	20	29	1.99
52245457--52245500	23	1.9	23	85	0	61	31	34	20	13	1.92
52246518--52246603	24	3.6	24	75	4	66	33	19	26	19	1.96
52246662--52246712	26	2.0	26	92	0	84	39	23	19	17	1.92
52246663--52246719	26	2.2	26	87	3	78	42	21	17	19	1.90
52248853--52248884	16	2.0	16	93	0	55	37	21	3	37	1.70
52255527--52255575	23	2.2	21	82	7	53	22	0	6	71	1.08
52280670--52280750	30	2.7	31	86	5	121	20	23	8	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52285326--52285411	30	2.8	30	85	1	91	26	20	8	44	1.80
52285337--52285411	30	2.5	30	88	0	114	26	20	6	46	1.75
52287730--52287768	6	6.5	6	100	0	78	0	15	69	15	1.20
52293572--52293681	37	2.8	40	73	9	109	25	17	22	34	1.96
52295053--52295109	30	1.9	29	85	3	78	22	24	36	15	1.94
52297781--52297894	21	5.5	21	67	8	63	16	20	18	44	1.87
52297781--52297894	42	2.7	42	86	4	151	16	20	18	44	1.87
52297791--52297908	42	2.8	42	87	3	141	16	22	17	43	1.88
52302703--52302734	16	2.0	16	100	0	64	43	18	6	31	1.75
52305364--52305397	17	2.0	17	88	0	50	52	0	0	47	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214