genome.fa.s25.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  176  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51706743--51706785	19	2.3	19	91	0	68	23	6	23	46	1.76
51713425--51713470	23	2.0	23	91	0	74	41	4	10	43	1.59
51714579--51714617	20	2.0	20	85	10	53	15	12	7	64	1.49
51714606--51714737	12	10.2	12	71	12	50	27	13	8	50	1.70
51714623--51714670	15	3.4	14	83	8	53	25	8	8	58	1.55
51714664--51714732	24	2.9	23	82	8	68	27	14	10	47	1.76
51716024--51716150	25	5.3	25	86	4	158	18	25	18	37	1.94
51716036--51716152	22	5.0	22	82	7	126	17	25	18	37	1.93
51721899--51721929	16	1.9	16	93	0	53	32	0	29	38	1.57
51722144--51722198	25	2.2	25	84	9	69	52	1	0	45	1.11
51722329--51722479	47	3.4	45	69	25	122	47	3	3	45	1.38
51722339--51722499	88	1.8	88	91	2	270	47	3	3	45	1.36
51722435--51722522	31	2.7	34	66	30	84	46	2	3	47	1.31
51732768--51732819	25	2.0	26	82	10	63	46	11	1	40	1.51
51733251--51733319	15	4.7	15	73	20	56	49	1	1	47	1.19
51738787--51738855	15	4.9	14	79	15	72	0	18	0	81	0.70
51738788--51738847	6	10.7	6	78	18	67	0	16	0	83	0.65
51738789--51738858	27	2.6	28	88	6	101	0	18	0	81	0.69
51738789--51738859	21	3.4	21	81	9	83	0	19	0	80	0.72
51738968--51739028	23	2.6	22	80	10	68	0	21	1	77	0.86
51738968--51739023	22	2.4	23	82	14	71	0	21	0	78	0.75
51738967--51739028	20	3.2	18	80	17	63	0	22	1	75	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51738971--51739022	7	7.1	7	82	4	50	0	21	0	78	0.74
51739404--51739512	29	3.7	30	84	6	134	42	5	19	33	1.74
51739413--51739512	30	3.4	30	88	2	148	40	6	20	34	1.77
51739544--51739581	17	2.2	18	90	4	60	26	2	5	65	1.27
51739600--51739632	14	2.4	14	94	0	57	81	18	0	0	0.68
51739600--51739632	5	7.0	5	86	13	52	81	18	0	0	0.68
51741320--51741375	28	2.1	27	93	6	96	30	1	0	67	1.01
51741327--51741386	28	2.1	28	84	6	77	35	3	0	61	1.12
51741361--51741402	11	3.9	11	82	17	61	45	2	0	52	1.13
51741361--51741402	21	2.0	22	90	4	68	45	2	0	52	1.13
51741359--51741408	22	2.3	23	82	6	68	46	2	0	52	1.12
51741358--51741422	22	3.0	21	77	8	60	44	1	1	52	1.19
51742042--51742067	8	3.2	8	100	0	52	11	0	0	88	0.52
51751322--51751394	19	3.5	21	74	9	69	2	30	15	52	1.57
51753878--51753908	13	2.5	12	94	5	53	35	0	48	16	1.46
51753878--51753908	6	5.0	6	92	7	53	35	0	48	16	1.46
51753915--51754107	60	3.3	59	75	11	214	34	4	47	13	1.64
51753888--51754107	118	1.9	118	93	3	381	34	4	46	14	1.65
51757985--51758038	20	2.6	21	88	2	83	29	38	9	22	1.85
51758166--51758205	16	2.4	16	87	4	53	15	15	0	70	1.18
51758169--51758220	14	3.3	16	76	13	54	17	13	0	69	1.19
51767009--51767166	46	3.5	45	90	4	248	33	15	23	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51775279--51775326	14	3.3	15	77	16	57	47	0	2	50	1.12
51786574--51786634	31	2.0	31	83	0	77	39	14	13	32	1.85
51787067--51787109	23	1.9	23	90	4	70	58	2	11	27	1.46
51790212--51790244	15	2.1	15	94	5	57	48	0	0	51	1.00
51792696--51792827	31	4.3	32	68	11	80	43	14	18	22	1.86
51799059--51799110	23	2.4	23	84	9	65	53	0	0	46	1.00
51799382--51799430	19	2.5	20	80	3	55	51	0	8	40	1.32
51804330--51804845	107	4.8	108	81	9	599	29	17	20	33	1.95
51804330--51804845	214	2.4	215	92	1	856	29	17	20	33	1.95
51810602--51810636	18	1.9	18	88	0	52	20	2	25	51	1.61
51817603--51817628	7	3.7	7	100	0	52	42	0	46	11	1.40
51819431--51819475	20	2.2	20	88	0	63	35	4	2	57	1.31
51819583--51819607	12	2.1	12	100	0	50	52	0	0	48	1.00
51819586--51819637	26	2.2	22	86	13	68	42	1	0	55	1.10
51823759--51823787	6	4.8	6	100	0	58	34	0	0	65	0.93
51824950--51824979	6	5.0	6	100	0	60	0	33	0	66	0.92
51828905--51828929	3	8.3	3	100	0	50	36	32	0	32	1.58
51840343--51840386	18	2.5	17	88	7	61	34	0	2	63	1.07
51847195--51847529	166	2.0	166	99	0	661	25	17	14	41	1.88
51851626--51851677	24	2.2	24	85	0	68	38	3	7	50	1.50
51858788--51858833	20	2.2	20	84	3	56	47	6	0	45	1.28
51865395--51865426	3	10.7	3	100	0	64	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51872842--51872911	29	2.5	28	80	8	72	28	5	1	64	1.25
51872881--51872915	17	2.1	16	89	10	52	28	2	5	62	1.32
51889133--51889180	25	1.9	25	87	8	71	20	25	20	33	1.97
51896336--51896380	21	2.0	23	83	8	58	13	48	17	20	1.80
51897938--51898234	110	2.7	108	91	2	470	30	16	20	32	1.94
51908929--51911191	753	3.0	753	99	0	4454	36	19	10	33	1.85
51915184--51915280	50	2.0	49	87	2	140	28	28	15	26	1.96
51930923--51931020	49	2.0	49	80	4	108	33	18	26	21	1.96
51933844--51933966	47	2.5	49	78	11	144	39	6	16	38	1.74
51934077--51934233	41	3.8	41	88	0	233	17	19	31	31	1.95
51934080--51934252	82	2.1	82	84	0	220	18	18	29	33	1.95
51937958--51937993	18	2.0	18	88	0	54	66	5	19	8	1.38
51940705--51940785	24	3.3	24	76	8	83	17	24	20	37	1.94
51943563--51943684	53	2.4	48	84	12	181	36	4	5	53	1.44
51943582--51943691	53	2.1	53	98	0	211	37	4	6	51	1.48
51945402--51945450	25	2.0	24	88	4	71	36	2	0	61	1.08
51945435--51945473	17	2.2	18	86	4	53	46	0	0	53	1.00
51956882--51956979	29	3.4	29	82	0	115	25	18	4	52	1.63
51957552--51957597	5	9.2	5	86	9	58	76	0	23	0	0.79
51957703--51957727	13	1.9	13	100	0	50	80	0	20	0	0.72
51957983--51958014	16	1.9	17	93	6	57	81	0	18	0	0.70
51960744--51960923	41	4.4	41	89	0	279	23	16	22	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51960744--51960959	82	2.6	82	85	2	229	25	15	22	37	1.93
51969292--51969325	12	2.9	12	91	4	52	17	26	0	55	1.42
51978299--51978904	76	7.9	76	83	4	772	26	19	20	33	1.97
51978301--51978904	151	4.0	152	87	1	793	26	19	20	32	1.97
51979389--51979433	23	2.0	23	95	0	81	13	13	15	57	1.65
51979501--51979581	29	2.8	29	79	3	92	23	17	4	54	1.62
51980305--51980342	20	1.9	20	94	0	67	86	0	10	2	0.66
51980306--51980351	6	7.3	6	90	4	56	84	0	10	4	0.75
51980305--51980336	7	4.7	7	92	7	57	87	0	12	0	0.54
51980303--51980348	13	3.5	13	82	11	58	84	0	8	6	0.77
51980599--51980631	16	2.0	17	94	5	59	78	0	21	0	0.75
51981682--51981715	3	12.0	3	87	12	54	67	0	32	0	0.91
51981681--51981714	11	3.1	11	87	12	52	70	0	29	0	0.87
51981673--51981711	19	2.1	19	90	9	62	69	0	30	0	0.89
51981740--51981768	4	7.2	4	100	0	58	75	0	24	0	0.80
51988629--51988659	12	2.6	12	89	0	53	74	9	0	16	1.07
51988661--51988689	15	1.9	15	100	0	58	0	24	0	75	0.80
51988662--51988709	18	2.5	19	83	10	62	0	31	0	68	0.90
51989869--51989919	19	2.7	19	77	14	61	35	3	1	58	1.28
51995742--51995798	23	2.5	22	83	8	71	61	1	1	35	1.17
51999268--51999357	39	2.2	40	84	3	110	37	3	6	52	1.44
52000357--52000381	2	12.5	2	100	0	50	52	48	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52001257--52001522	145	1.8	144	80	6	315	39	11	11	37	1.78
52005404--52005464	32	2.0	31	83	6	79	36	3	21	39	1.70
52014128--52014174	22	2.1	22	84	7	60	36	2	4	57	1.30
52014255--52014377	35	3.3	35	77	16	149	49	9	2	38	1.49
52014255--52014329	33	2.2	34	88	4	107	50	9	1	38	1.43
52014247--52014389	76	1.9	76	94	2	252	48	9	4	37	1.57
52017781--52017856	20	3.8	19	71	10	62	35	9	0	55	1.32
52017781--52017832	21	2.6	19	77	11	59	38	7	0	53	1.30
52019330--52019385	26	2.2	26	84	9	71	58	0	10	30	1.32
52021133--52021895	44	16.9	44	69	12	305	28	20	19	32	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214