Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  192  of  214  ( 25680 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56191667--56191709
21
2.0
21
86
0
59
25
13
18
41
1.88
56195089--56195130
3
14.0
3
89
0
66
30
2
2
64
1.19
56195299--56195344
16
2.9
16
72
15
51
34
10
0
54
1.36
56201493--56201605
11
10.9
11
69
17
73
41
1
0
56
1.09
56201483--56201605
33
4.0
31
80
9
144
40
1
0
57
1.08
56201444--56201586
74
2.0
71
91
6
234
36
2
0
60
1.11
56201565--56201604
18
2.2
18
95
4
71
50
0
0
50
1.00
56201565--56201604
9
4.3
9
84
6
53
50
0
0
50
1.00
56202884--56202934
24
2.0
25
81
7
59
50
0
13
35
1.42
56205522--56205556
15
2.4
14
86
9
52
34
8
11
45
1.71
56209149--56209205
29
2.0
29
89
0
87
38
22
17
21
1.93
56211582--56211611
15
2.0
15
100
0
60
26
13
26
33
1.93
56214959--56214993
17
2.1
17
89
5
54
31
8
2
57
1.44
56215869--56215907
20
2.0
20
90
5
62
64
0
0
35
0.94
56216236--56216305
18
3.6
18
72
22
61
40
0
4
55
1.19
56216236--56216347
41
2.7
42
84
4
147
40
1
4
53
1.31
56216392--56216444
27
2.0
27
100
0
106
33
7
7
50
1.59
56242442--56242475
17
2.0
17
88
0
50
44
2
0
52
1.16
56243247--56243302
20
2.9
19
79
7
69
55
1
0
42
1.10
56243321--56243366
21
2.1
23
84
15
62
69
0
6
23
1.11
56243329--56243376
20
2.4
19
76
10
51
62
0
8
29
1.24
56249780--56249817
17
2.2
17
86
9
51
36
2
2
57
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56249780--56249825
18
2.6
18
83
10
51
36
2
2
58
1.22
56256041--56256279
41
5.8
41
87
6
290
27
24
20
27
1.99
56256041--56256269
123
1.9
122
85
7
320
27
24
19
27
1.99
56263348--56263612
103
2.6
104
90
0
406
30
30
20
19
1.97
56266367--56266646
41
6.8
40
88
6
334
27
23
20
28
1.99
56269763--56269807
23
2.0
23
90
0
72
42
22
6
28
1.79
56272635--56272694
3
20.0
3
100
0
120
33
0
0
66
0.92
56279861--56279886
3
8.7
3
100
0
52
69
0
0
30
0.89
56282449--56282488
13
3.1
13
85
0
53
32
7
22
37
1.82
56283192--56283238
23
2.2
20
77
22
60
48
17
0
34
1.47
56283197--56283245
23
2.1
23
100
0
98
46
16
0
36
1.47
56284559--56284598
20
2.0
20
90
0
62
30
10
10
50
1.69
56284544--56284610
34
1.9
35
84
3
91
32
8
10
47
1.69
56286759--56286840
27
2.8
27
87
10
101
30
30
21
17
1.96
56286653--56286843
102
1.9
102
95
0
346
29
29
20
20
1.98
56291836--56292191
33
10.5
33
69
24
192
31
27
19
20
1.97
56291863--56292196
102
3.3
102
95
0
596
31
27
20
20
1.97
56294159--56294201
22
2.0
22
85
0
59
55
16
27
0
1.41
56296860--56296927
16
4.2
16
88
0
109
27
0
32
39
1.57
56297163--56297197
18
2.0
17
88
5
52
54
0
0
45
0.99
56297283--56297317
18
2.0
17
88
5
52
54
0
0
45
0.99
56297146--56297888
120
6.2
120
100
0
1486
48
4
2
44
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56297403--56297437
18
2.0
17
88
5
52
54
0
0
45
0.99
56297523--56297557
18
2.0
17
88
5
52
54
0
0
45
0.99
56297643--56297677
18
2.0
17
88
5
52
54
0
0
45
0.99
56297763--56297797
18
2.0
17
88
5
52
54
0
0
45
0.99
56300218--56300395
27
6.6
27
83
3
205
26
15
28
29
1.96
56300219--56300374
82
1.9
81
88
3
233
26
15
28
29
1.96
56300215--56300395
82
2.2
81
83
2
229
27
15
27
29
1.96
56308269--56308446
27
6.6
27
83
3
205
26
15
28
29
1.96
56308270--56308425
82
1.9
81
88
3
233
26
15
28
29
1.96
56308266--56308446
82
2.2
81
83
2
229
27
15
27
29
1.96
56310396--56310451
21
2.6
21
91
2
85
41
25
12
21
1.88
56311538--56311673
33
4.3
33
77
12
149
61
12
17
8
1.56
56311604--56311658
18
3.2
17
71
23
53
61
16
14
7
1.54
56325279--56325347
27
2.6
27
80
0
93
20
33
31
14
1.92
56326585--56326634
19
2.6
19
100
0
100
48
16
28
8
1.74
56326636--56326702
27
2.5
27
85
0
89
10
31
34
23
1.89
56331758--56331810
23
2.3
23
93
0
97
28
26
20
24
1.99
56358170--56358221
25
2.1
25
85
0
68
28
5
9
55
1.55
56358649--56358723
6
13.0
6
84
8
102
33
0
0
66
0.92
56358852--56359098
84
2.9
83
78
9
257
31
9
10
47
1.70
56358881--56359097
86
2.6
85
82
4
251
30
10
10
49
1.69
56359117--56359290
85
2.0
84
83
4
215
47
10
9
32
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56361292--56361332
11
3.7
11
80
0
55
29
17
0
53
1.44
56362041--56362081
18
2.2
18
87
12
57
26
2
9
60
1.40
56368574--56368619
24
1.9
24
100
0
92
45
6
0
47
1.28
56370383--56370421
3
13.0
3
100
0
78
33
33
0
33
1.58
56374025--56374092
34
2.0
34
91
2
111
54
10
4
30
1.54
56374127--56374180
17
3.5
17
69
23
55
61
5
5
27
1.41
56374127--56374187
29
2.1
29
93
0
104
59
4
4
31
1.40
56379490--56379559
30
2.2
32
87
5
99
55
0
2
41
1.14
56379514--56379596
30
2.7
31
85
3
98
42
2
2
53
1.27
56379533--56379596
31
2.1
31
88
2
94
35
3
3
57
1.30
56387134--56387195
30
2.0
31
87
3
90
51
3
0
45
1.17
56396448--56396495
24
2.0
25
83
4
62
64
8
0
27
1.22
56404281--56404322
21
2.0
21
95
0
75
38
16
21
23
1.93
56404766--56404820
21
2.6
21
88
0
83
23
9
38
29
1.85
56405082--56405133
22
2.3
22
77
9
52
50
5
1
42
1.37
56411355--56411379
12
2.1
12
100
0
50
8
8
8
76
1.18
56412365--56412406
16
2.6
16
80
3
57
40
0
2
57
1.12
56414437--56414472
17
2.2
17
90
5
56
13
30
0
55
1.39
56414436--56414473
16
2.4
16
82
8
51
15
31
0
52
1.43
56428258--56428312
3
18.3
3
100
0
110
67
0
0
32
0.91
56429993--56430030
12
3.2
12
81
11
51
36
7
7
47
1.62
56435510--56435542
12
2.6
13
90
4
50
33
6
6
54
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56439614--56439654
20
2.0
20
85
9
55
56
2
0
41
1.13
56440439--56440496
2
29.0
2
100
0
116
0
50
0
50
1.00
56442985--56443019
18
1.9
18
94
0
61
20
14
11
54
1.70
56443630--56443800
84
2.0
84
96
0
315
32
16
15
35
1.91
56458483--56458514
8
4.0
8
91
0
55
40
0
0
59
0.97
56458477--56458513
16
2.3
16
95
0
65
40
0
0
59
0.97
56459196--56459224
14
2.1
14
100
0
58
34
0
0
65
0.93
56459571--56459704
25
5.6
24
79
10
125
15
24
20
39
1.91
56459618--56459698
23
3.5
23
81
5
92
12
24
20
41
1.87
56461045--56461094
26
1.9
26
91
0
82
18
24
34
24
1.96
56461111--56461223
43
2.7
42
80
13
126
20
19
27
32
1.97
56461074--56461215
42
3.4
41
77
15
139
20
17
26
35
1.95
56470681--56470713
17
1.9
17
88
11
50
48
6
6
39
1.53
56473765--56473809
16
2.8
16
79
0
54
66
2
2
28
1.15
56482864--56482897
17
1.9
18
88
5
52
32
0
0
67
0.91
56483309--56483352
21
2.1
21
82
0
52
54
2
0
43
1.12
56487710--56487824
58
2.0
57
94
1
203
44
10
8
36
1.70
56488714--56488820
38
2.8
38
89
0
160
43
16
12
27
1.83
56489341--56489380
17
2.2
19
86
8
57
70
0
12
17
1.18
56493986--56494017
6
5.3
6
100
0
64
15
15
37
31
1.89
56494492--56494590
11
9.5
11
75
19
88
40
1
0
58
1.05
56494475--56494590
41
2.9
39
82
11
137
39
0
0
59
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56494503--56494601
29
3.3
29
88
2
135
40
1
0
58
1.05
56495206--56495258
19
2.7
20
77
11
56
54
1
1
41
1.22
56496567--56496606
21
1.9
21
84
0
53
32
5
10
52
1.56
56499931--56499961
14
2.1
15
94
5
55
12
9
0
77
0.99
56501369--56501425
30
1.9
30
85
3
80
42
1
24
31
1.65
56501637--56501668
13
2.5
13
94
0
55
31
0
12
56
1.37
56501762--56502004
50
4.7
50
82
5
254
27
23
28
20
1.99
56501762--56502012
100
2.4
103
86
6
339
26
23
28
21
1.99
56508567--56508664
23
4.3
23
90
2
162
31
26
21
20
1.98
56508574--56508662
45
2.0
45
95
0
160
31
26
22
19
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214