genome.fa.s25.2.7.7.80.10.50.1000.210.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  210  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61921991--61922038	24	2.0	24	100	0	96	33	20	16	29	1.95
61935159--61935212	22	2.6	20	78	16	56	59	3	7	29	1.42
61936607--61936672	31	2.1	30	83	10	80	33	15	13	37	1.86
61942382--61942422	21	2.0	21	90	0	64	29	21	29	19	1.98
61951069--61951105	12	3.2	12	96	3	67	24	27	13	35	1.93
61956878--61956936	31	1.9	31	85	0	82	37	13	8	40	1.75
61960176--61960200	6	4.2	6	100	0	50	84	0	16	0	0.63
61976011--61976181	86	2.0	85	98	1	333	49	17	14	18	1.80
61977740--61977773	17	2.0	17	88	0	50	23	0	5	70	1.09
61986283--61986311	6	4.8	6	100	0	58	17	48	17	17	1.82
61986958--61987025	28	2.4	30	80	11	81	55	4	1	38	1.29
61989734--61989783	25	2.0	25	100	0	100	56	20	0	24	1.43
61999743--61999785	16	2.5	17	81	7	52	37	6	2	53	1.41
61999716--61999981	48	5.2	48	65	18	151	34	8	3	53	1.48
61999779--61999829	20	2.6	20	81	3	59	37	9	0	52	1.34
61999846--61999887	16	2.4	18	80	7	52	35	7	4	52	1.50
61999881--61999926	20	2.3	20	80	0	56	34	8	0	56	1.30
61999716--62000034	102	3.0	106	91	3	511	34	8	3	53	1.49
61999952--62000001	16	3.1	16	77	13	57	38	6	4	52	1.45
61999989--62000026	20	1.9	20	88	0	58	31	13	0	55	1.38
61999762--62000028	52	5.1	53	70	15	232	34	9	2	52	1.50
62000061--62000100	20	2.1	19	86	13	55	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62009500--62009544	19	2.3	20	82	17	60	57	4	2	35	1.31
62009625--62009690	31	2.1	31	83	10	82	33	7	15	43	1.74
62010926--62010973	25	1.9	25	83	8	62	58	6	10	25	1.54
62014969--62015636	132	5.1	132	96	0	1158	29	26	16	28	1.96
62014969--62015634	44	15.1	44	77	6	632	29	26	16	27	1.96
62030444--62030548	50	2.1	50	98	1	203	30	7	21	40	1.81
62049936--62049981	19	2.3	20	82	10	60	58	4	2	34	1.30
62050062--62050127	31	2.1	31	83	10	82	33	7	15	43	1.74
62051329--62051376	25	1.9	25	83	8	62	58	6	10	25	1.54
62064386--62064424	20	2.0	20	94	0	69	38	0	0	61	0.96
62067351--62067385	18	1.9	18	88	0	52	68	0	2	28	1.04
62069772--62069799	12	2.3	12	100	0	56	46	0	0	53	1.00
62073939--62073984	23	2.0	23	100	0	92	30	8	8	52	1.62
62076520--62076600	39	2.1	39	100	0	162	51	7	4	35	1.51
62085486--62085542	29	1.9	30	86	10	82	52	10	7	29	1.62
62086716--62086783	29	2.3	30	80	12	79	23	16	20	39	1.91
62089325--62089377	26	2.0	26	92	0	88	41	24	1	32	1.66
62090740--62090781	22	2.0	22	85	4	59	64	2	11	21	1.38
62090740--62090784	21	2.1	21	84	8	56	66	2	11	20	1.33
62090837--62090883	23	2.0	23	100	0	94	25	12	12	48	1.77
62091200--62091272	33	2.1	35	82	9	89	41	2	5	50	1.40
62099919--62100041	12	10.2	12	85	3	149	68	0	31	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62100700--62100726	14	1.9	14	100	0	54	59	3	14	22	1.51
62101185--62101246	28	2.2	28	85	8	81	43	4	1	50	1.33
62101201--62101259	28	2.1	28	87	0	82	40	8	1	49	1.43
62106226--62106291	7	9.1	7	72	18	55	39	0	46	13	1.43
62106361--62106604	30	8.2	30	94	0	422	51	0	9	38	1.40
62107409--62107465	16	3.6	16	75	17	64	38	12	1	47	1.51
62107403--62107467	32	2.0	32	100	0	130	41	12	3	43	1.58
62115704--62116170	156	3.0	154	84	3	612	26	22	22	29	1.99
62138018--62138112	38	2.5	38	78	13	99	35	11	1	51	1.45
62140644--62140673	4	7.5	4	100	0	60	50	26	0	23	1.50
62165832--62166058	122	1.8	124	83	3	307	26	11	17	44	1.82
62168256--62168281	9	2.9	9	100	0	52	42	0	0	57	0.98
62168336--62168385	25	2.0	25	96	0	91	50	0	4	46	1.20
62168616--62168663	25	1.9	25	100	0	96	20	4	33	41	1.72
62176951--62177048	33	2.9	35	73	19	91	46	4	0	48	1.20
62176999--62177055	30	1.9	30	82	13	73	47	3	0	49	1.18
62183679--62183748	29	2.5	28	74	4	70	45	1	5	47	1.35
62195255--62195309	22	2.5	22	96	0	101	40	20	7	32	1.80
62201223--62201465	50	4.8	50	92	0	387	20	30	23	26	1.98
62201560--62201590	13	2.4	13	94	0	53	54	12	0	32	1.38
62201803--62201860	30	1.9	30	85	0	80	29	24	3	43	1.70
62205434--62205467	15	2.3	15	94	0	59	32	20	32	14	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62208814--62209052	50	4.8	49	88	4	338	20	30	22	26	1.98
62208814--62209052	99	2.4	97	89	4	354	20	30	22	26	1.98
62209147--62209177	13	2.4	13	94	0	53	54	12	0	32	1.38
62209390--62209446	30	1.9	30	85	3	80	31	24	1	42	1.65
62227932--62227973	16	2.6	17	85	7	52	40	21	2	35	1.66
62233144--62233285	41	3.4	41	81	7	151	26	15	27	30	1.96
62233227--62233429	44	4.6	44	86	3	277	21	19	28	30	1.98
62239664--62239783	56	2.1	57	89	4	190	35	14	6	43	1.71
62246277--62246345	25	2.7	24	84	8	75	49	13	0	37	1.42
62246491--62246516	8	3.2	8	100	0	52	34	0	0	65	0.93
62248344--62248385	21	2.0	20	86	13	59	69	0	0	30	0.89
62249382--62249422	16	2.5	17	80	11	59	31	0	0	68	0.90
62250866--62250925	31	1.9	32	82	3	77	23	11	8	56	1.61
62251073--62251133	20	3.2	20	68	17	58	52	8	0	39	1.31
62251248--62251317	29	2.3	29	87	4	95	35	10	12	41	1.77
62251448--62251515	31	2.1	31	81	5	73	44	5	8	41	1.60
62253442--62253523	41	2.0	41	100	0	164	26	17	24	31	1.97
62257568--62257614	24	2.0	24	95	0	85	2	10	8	78	1.04
62258753--62258799	23	2.0	23	84	8	60	51	2	0	46	1.13
62264022--62264065	16	2.8	17	80	13	58	4	15	9	70	1.30
62264088--62264153	7	8.6	7	78	18	53	53	1	1	43	1.19
62264075--62264153	27	2.8	31	76	20	91	49	2	1	46	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62264085--62264150	8	8.4	8	70	21	50	51	1	1	45	1.19
62266835--62266880	20	2.4	20	85	7	60	58	0	2	39	1.10
62267189--62267232	22	2.0	21	91	4	70	40	4	13	40	1.65
62268171--62268232	8	6.9	9	78	15	58	30	4	3	61	1.33
62268171--62268232	3	20.7	3	76	18	58	30	4	3	61	1.33
62268851--62268993	72	2.0	70	90	2	223	30	20	16	32	1.95
62272817--62272884	33	2.1	33	100	0	136	47	17	11	23	1.81
62274714--62274744	16	1.9	16	93	0	53	48	22	0	29	1.51
62277957--62278049	18	5.2	18	88	0	132	30	24	15	30	1.95
62277963--62278049	36	2.4	36	94	0	156	31	24	13	31	1.94
62283792--62283919	38	3.3	39	92	4	204	54	6	1	37	1.35
62283899--62283931	17	1.9	17	93	0	57	42	3	0	54	1.15
62287142--62287194	9	6.2	9	79	16	51	71	1	0	26	0.96
62287147--62287194	16	3.0	16	87	0	69	72	2	0	25	0.95
62287958--62288035	15	5.2	15	67	11	61	44	7	21	25	1.79
62287954--62288035	30	2.7	30	94	0	137	46	7	21	24	1.77
62292620--62292727	15	7.2	15	67	12	78	44	7	22	25	1.79
62292614--62292737	30	4.1	30	93	1	203	43	6	24	25	1.78
62293835--62294621	390	2.0	390	99	0	1556	31	17	18	33	1.94
62294693--62294733	20	2.0	20	100	0	82	14	19	21	43	1.87
62297924--62297953	15	1.9	16	93	6	53	26	0	0	73	0.84
62310046--62310087	21	2.0	21	100	0	84	47	4	19	28	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62310947--62310980	3	11.3	3	87	0	50	0	26	35	38	1.57
62319495--62319561	34	1.9	35	87	3	100	44	14	8	31	1.76
62322890--62322922	16	2.0	17	88	5	50	57	0	3	39	1.14
62323869--62323951	30	2.8	30	85	10	100	54	6	3	36	1.43
62341035--62341071	19	1.9	20	94	5	67	51	2	18	27	1.60
62341929--62341962	3	11.3	3	87	0	50	0	26	35	38	1.57
62350434--62350500	34	1.9	35	87	3	100	44	14	8	31	1.76
62353906--62353938	16	2.0	17	88	5	50	57	0	3	39	1.14
62354901--62354983	30	2.8	30	85	10	100	54	6	3	36	1.43
62358142--62358176	16	2.3	16	90	9	56	34	0	0	65	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214