Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  13  of  214  ( 25680 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3646113--3646142
13
2.3
13
94
0
51
80
0
0
20
0.72
3646760--3646979
94
2.4
93
84
5
279
33
7
8
50
1.60
3646851--3646896
10
4.8
10
78
10
51
23
2
0
73
0.94
3646760--3647019
94
2.8
93
75
7
264
32
7
10
50
1.64
3647990--3648026
4
9.0
4
94
5
65
48
0
0
51
1.00
3669179--3669217
16
2.4
16
86
0
60
53
5
15
25
1.62
3669304--3669404
51
2.0
51
98
0
193
30
14
19
34
1.92
3671769--3671976
43
4.9
42
80
9
226
28
26
18
26
1.98
3674041--3674091
28
1.9
25
84
11
66
31
23
9
35
1.87
3676325--3676380
25
2.2
25
83
0
67
28
21
39
10
1.87
3676387--3676633
135
1.8
133
81
10
306
37
4
38
19
1.71
3678583--3678611
7
4.1
7
100
0
58
13
0
58
27
1.36
3681797--3681839
17
2.5
17
85
11
52
34
0
4
60
1.17
3682662--3682729
29
2.3
30
92
2
111
27
0
16
55
1.41
3682771--3682811
22
1.9
22
85
5
57
58
4
0
36
1.20
3683307--3683415
40
2.8
40
77
13
109
56
0
9
33
1.31
3683313--3683360
21
2.4
20
79
6
53
50
0
10
39
1.37
3683398--3683442
18
2.5
18
82
10
56
75
0
2
22
0.91
3685228--3685270
16
2.6
17
78
10
54
25
0
2
72
0.97
3685203--3685280
33
2.3
33
78
12
88
25
1
5
67
1.18
3686846--3686915
29
2.3
30
85
9
90
27
11
12
48
1.75
3687097--3687129
8
3.7
9
84
15
50
12
12
0
75
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3687093--3687127
18
1.9
18
94
0
61
14
8
0
77
0.99
3687371--3687417
17
2.9
16
72
9
51
76
2
14
6
1.08
3702581--3702627
15
3.2
15
71
17
53
51
6
4
38
1.47
3704082--3704123
14
3.0
14
83
16
52
33
2
0
64
1.07
3704074--3704110
19
1.9
19
88
0
56
32
2
0
64
1.07
3706527--3706556
11
2.6
11
94
5
51
36
3
0
60
1.14
3711499--3711584
42
2.0
42
100
0
172
43
22
11
23
1.86
3711519--3711587
21
3.2
22
67
29
67
44
21
11
21
1.84
3712695--3712779
42
2.0
42
100
0
170
45
21
11
21
1.83
3727464--3727529
29
2.2
30
89
2
98
25
12
25
36
1.91
3740299--3740345
21
2.2
22
88
3
69
21
36
19
23
1.95
3743842--3743877
18
2.0
18
88
0
54
16
5
19
58
1.58
3745812--3745896
4
20.5
4
71
7
62
43
2
3
50
1.32
3745812--3745890
21
3.6
21
76
14
70
43
2
2
51
1.28
3745822--3745887
25
2.6
25
97
0
123
42
3
3
51
1.32
3750596--3750630
18
2.0
17
88
5
52
62
8
17
11
1.52
3751120--3751160
21
1.9
22
90
5
66
60
7
4
26
1.43
3751375--3751422
25
2.0
25
88
8
73
35
16
16
31
1.92
3751473--3751545
16
4.6
16
75
0
74
42
2
27
27
1.69
3752898--3752948
25
2.0
26
96
3
95
52
3
11
31
1.56
3759053--3759107
29
1.9
29
81
3
67
52
9
9
29
1.63
3763116--3763402
51
5.6
51
76
4
267
30
27
16
25
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3763114--3763400
102
2.8
102
88
1
425
30
26
16
25
1.97
3776386--3776445
31
1.9
31
86
0
84
48
5
8
38
1.55
3786185--3786247
27
2.3
27
86
5
83
30
22
17
30
1.96
3792081--3792177
29
3.1
29
64
16
77
50
5
9
35
1.57
3792089--3792192
35
3.1
35
63
20
96
50
5
9
34
1.59
3792022--3792211
64
3.0
64
93
2
310
48
3
10
36
1.55
3792449--3792487
18
2.3
16
86
8
51
30
0
0
69
0.89
3792450--3792500
26
1.9
27
92
4
86
29
0
1
68
1.00
3798147--3798301
63
2.5
63
97
0
301
42
16
20
20
1.89
3814795--3814833
18
2.2
18
100
0
78
28
15
28
28
1.96
3816323--3816387
31
2.1
30
85
2
85
30
16
9
43
1.80
3818632--3818948
156
2.0
156
96
0
589
32
19
18
29
1.96
3831016--3831047
16
2.0
16
100
0
64
12
12
18
56
1.67
3832752--3832809
19
3.0
20
82
7
66
51
0
1
46
1.11
3832762--3832809
10
4.9
10
76
5
53
54
0
0
45
0.99
3833025--3833153
10
13.4
9
66
21
50
27
3
3
65
1.24
3833072--3833143
19
3.7
20
71
15
69
27
2
2
66
1.19
3833031--3833125
30
3.1
31
82
7
88
27
4
3
65
1.26
3833072--3833164
11
9.5
10
75
12
61
30
2
2
65
1.16
3833146--3833199
27
1.9
29
85
7
76
37
0
3
59
1.15
3833133--3833211
29
2.9
27
77
5
79
32
1
2
63
1.16
3833251--3833446
89
2.2
89
86
1
268
34
9
22
34
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3837315--3837479
83
2.0
83
98
0
321
28
15
11
44
1.82
3843689--3843775
43
2.0
43
95
0
156
25
3
21
49
1.65
3844633--3844687
28
2.0
29
85
7
78
23
7
5
63
1.41
3845437--3845472
15
2.5
15
91
8
58
50
2
0
47
1.15
3845936--3846010
20
3.8
20
81
16
79
68
5
1
25
1.19
3845938--3846010
29
2.5
28
76
6
74
69
4
1
24
1.13
3845938--3846092
10
15.9
10
64
23
64
64
3
1
29
1.22
3845997--3846035
19
2.0
20
90
5
62
58
5
0
35
1.20
3845982--3846041
17
3.3
18
78
15
61
61
3
1
33
1.22
3846038--3846092
21
2.6
21
78
13
60
63
1
1
32
1.15
3846043--3846100
10
5.8
9
77
18
53
65
1
1
31
1.13
3846531--3846584
9
6.1
9
75
16
51
33
1
1
62
1.16
3846576--3846616
22
1.9
21
90
5
64
43
2
2
51
1.28
3848294--3848362
30
2.3
30
85
5
86
27
34
18
18
1.95
3854312--3854444
30
4.5
30
79
7
146
29
23
4
42
1.73
3854312--3854425
59
1.9
60
87
5
169
28
24
4
42
1.74
3854755--3854801
22
2.2
22
78
17
55
70
10
14
4
1.31
3854873--3854898
10
2.6
10
100
0
52
0
42
38
19
1.51
3854953--3854997
9
5.1
9
86
5
65
73
0
26
0
0.84
3855070--3855115
21
2.1
21
84
8
56
67
10
21
0
1.21
3855226--3855272
18
2.6
18
86
3
58
78
2
19
0
0.85
3855780--3855854
19
4.0
19
70
20
68
40
8
9
42
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3855756--3855850
36
2.6
35
85
11
120
38
9
9
42
1.70
3855811--3855855
20
2.2
20
88
4
63
51
6
6
35
1.55
3864888--3864927
20
2.0
20
95
0
71
37
25
22
15
1.93
3866170--3866228
30
2.0
30
89
0
91
49
15
13
22
1.79
3869780--3869862
25
3.3
25
81
5
96
30
18
25
26
1.98
3869777--3869872
50
1.9
50
81
8
115
30
18
26
25
1.98
3869816--3869872
25
2.3
25
84
6
71
29
17
26
26
1.97
3876203--3876242
10
3.8
11
78
21
50
75
0
2
22
0.93
3876200--3876242
15
3.1
14
87
12
63
74
0
2
23
0.93
3876203--3876250
7
7.2
6
86
9
51
75
2
2
20
1.02
3876203--3876250
15
3.6
12
88
11
51
75
2
2
20
1.02
3876701--3876732
16
2.0
16
100
0
64
6
56
18
18
1.62
3878041--3878174
44
3.0
44
94
2
225
26
24
15
33
1.95
3878002--3878174
88
2.0
88
80
6
199
26
22
18
32
1.97
3878305--3878513
50
4.2
50
75
1
177
22
25
22
29
1.99
3878331--3878621
100
2.9
100
88
1
404
24
23
21
29
1.99
3878382--3878616
50
4.7
50
68
10
158
24
21
22
31
1.98
3885026--3885066
19
2.2
19
91
4
66
58
4
0
36
1.20
3886248--3886333
40
2.2
40
85
4
111
37
3
6
52
1.46
3889332--3889384
6
8.8
6
93
0
52
24
0
7
67
1.16
3889350--3889384
3
11.7
3
100
0
70
31
0
0
68
0.90
3890536--3890593
23
2.2
28
77
22
72
48
6
1
43
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3890542--3890596
23
2.2
26
90
9
89
47
5
1
45
1.36
3900671--3900715
7
6.3
7
82
5
54
75
0
0
24
0.80
3901338--3901386
21
2.3
21
89
0
71
40
2
4
53
1.32
3901440--3901567
20
6.7
19
76
12
79
25
3
5
65
1.31
3901502--3901558
20
2.8
21
94
5
107
19
3
8
68
1.31
3901491--3901567
10
7.9
10
70
8
52
22
2
7
67
1.29
3901491--3901567
20
3.9
19
82
11
93
22
2
7
67
1.29
3905354--3905478
41
3.0
41
97
0
241
33
16
9
40
1.80
3919125--3919172
20
2.4
20
82
6
62
68
8
2
20
1.26
3921251--3921281
3
10.3
3
100
0
62
32
0
0
67
0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214