genome.fa.s25.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  34  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9399741--9399796	21	2.8	19	84	10	76	39	8	14	37	1.77
9399741--9399796	19	2.9	21	89	10	84	39	8	14	37	1.77
9399754--9399819	19	3.0	22	82	12	66	37	7	16	37	1.77
9402525--9402572	18	2.6	18	83	9	53	52	2	2	43	1.24
9405470--9405542	37	2.0	37	97	0	137	45	6	15	32	1.72
9411931--9412060	41	3.1	41	80	3	134	34	23	20	22	1.97
9414318--9414417	37	2.7	37	76	6	103	19	15	29	37	1.91
9419659--9419741	22	3.9	21	85	4	103	46	21	20	10	1.81
9422955--9423051	42	2.3	42	85	5	124	30	13	16	39	1.87
9423139--9423232	24	3.9	24	79	5	109	25	20	22	31	1.98
9423140--9423234	48	2.0	48	89	0	145	25	20	23	31	1.98
9423188--9423339	64	2.4	64	86	0	205	26	18	23	30	1.98
9423252--9423298	24	2.0	24	86	0	67	27	21	23	27	1.99
9425070--9425131	28	2.3	27	82	2	70	45	9	11	33	1.73
9425395--9425421	4	6.8	4	100	0	54	77	0	0	22	0.76
9427048--9427354	44	6.9	44	73	5	226	25	25	19	30	1.98
9427122--9427422	88	3.3	88	81	6	336	25	24	18	31	1.98
9427029--9427327	133	2.3	133	85	1	413	26	25	18	30	1.98
9437589--9437619	16	1.9	16	93	0	53	38	16	12	32	1.86
9439201--9439262	28	2.3	27	82	2	70	45	9	11	33	1.73
9439523--9439549	4	6.8	4	100	0	54	77	0	0	22	0.76
9441483--9441590	56	1.9	56	90	0	171	52	10	13	23	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9441861--9441917	25	2.2	25	96	3	105	38	3	10	47	1.55
9442136--9442170	7	5.1	7	93	6	63	40	0	0	60	0.97
9446412--9446444	16	2.1	16	100	0	66	57	12	30	0	1.35
9454193--9454223	12	2.6	12	89	0	53	41	16	6	35	1.74
9457881--9457962	31	2.6	31	90	0	119	20	30	10	37	1.87
9460073--9460158	28	3.1	28	83	3	111	32	22	13	31	1.93
9460093--9460140	14	3.4	14	72	11	53	31	20	12	35	1.90
9460149--9460194	21	2.2	21	88	0	65	32	32	13	21	1.92
9464046--9464082	15	2.5	15	86	0	56	45	0	0	54	1.00
9465268--9465306	19	2.0	20	90	10	62	48	5	0	46	1.24
9467476--9467523	16	2.9	16	82	14	62	60	16	6	16	1.55
9467482--9467523	16	2.6	16	92	0	75	61	14	7	16	1.53
9471819--9471868	17	2.9	18	79	8	59	44	10	16	30	1.80
9475138--9475171	17	2.0	18	88	11	54	41	11	0	47	1.40
9483122--9483174	25	2.1	25	92	0	88	41	15	7	35	1.75
9487936--9487981	23	2.0	23	95	0	83	15	17	13	54	1.71
9489763--9489936	59	3.0	59	83	9	198	43	1	2	51	1.26
9490097--9490147	16	3.2	16	91	0	84	27	29	5	37	1.80
9492226--9492266	21	1.9	22	90	5	66	75	2	21	0	0.92
9493631--9493664	17	1.9	18	88	5	52	35	5	11	47	1.65
9499015--9499059	21	2.1	22	84	12	58	51	4	0	44	1.21
9499997--9500120	48	2.6	48	88	0	176	20	54	12	12	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9499996--9500121	24	5.2	24	65	14	80	19	54	12	12	1.69
9508171--9508253	33	2.6	33	80	3	98	20	25	14	39	1.90
9512585--9512642	29	2.0	30	86	3	82	18	51	10	18	1.74
9517061--9517095	16	2.2	16	100	0	70	14	17	17	51	1.77
9519406--9519512	21	5.2	21	80	6	112	45	17	22	14	1.84
9525908--9525950	15	2.9	15	83	10	54	69	4	2	23	1.18
9527134--9527241	32	3.5	30	73	13	85	25	12	4	58	1.53
9527266--9527357	41	2.2	42	78	1	105	22	7	1	68	1.21
9527572--9527609	3	12.7	3	94	0	67	31	2	0	65	1.06
9528575--9528715	72	2.0	72	97	2	266	41	4	9	45	1.56
9528818--9529164	178	1.9	180	91	1	563	35	9	6	48	1.61
9531623--9531656	17	1.9	18	88	5	52	17	0	8	73	1.08
9532039--9532077	20	2.0	20	84	0	51	33	0	7	58	1.26
9563641--9563704	33	2.0	32	90	3	101	39	25	9	26	1.86
9563919--9564064	41	3.6	41	91	4	224	28	21	21	28	1.99
9565613--9565637	13	1.9	13	100	0	50	68	24	0	8	1.16
9571261--9571324	33	2.0	32	90	3	101	39	25	9	26	1.86
9571538--9571693	41	3.8	41	89	6	235	28	22	20	28	1.98
9584112--9584148	19	1.9	19	100	0	74	37	2	16	43	1.62
9584190--9584271	41	2.0	41	95	0	146	29	8	14	47	1.74
9590073--9590127	23	2.3	25	79	20	64	70	7	18	3	1.25
9590255--9590289	18	1.9	18	88	0	52	2	17	8	71	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9590880--9590941	9	6.9	9	90	0	88	25	11	27	35	1.90
9593318--9593551	79	3.0	79	85	6	293	14	17	17	50	1.78
9604125--9604150	13	2.0	13	100	0	52	46	15	7	30	1.74
9604158--9604222	30	2.2	30	97	0	121	27	30	3	38	1.72
9605318--9605360	18	2.4	18	92	0	68	20	27	9	41	1.83
9605734--9605790	25	2.3	23	81	18	71	43	0	3	52	1.18
9608852--9609245	127	3.1	126	88	2	587	30	17	15	36	1.91
9609301--9609415	34	3.5	33	80	9	119	46	12	0	41	1.41
9609433--9609538	35	3.0	35	81	9	117	46	23	0	29	1.59
9609512--9609551	15	2.7	15	80	3	55	55	35	0	10	1.34
9611556--9611617	31	2.0	31	100	0	124	35	16	29	19	1.93
9615956--9615998	19	2.3	18	85	14	61	25	0	2	72	0.97
9622036--9622070	17	2.1	18	89	10	56	48	0	8	42	1.33
9623015--9623196	51	3.6	50	76	11	165	28	14	24	33	1.94
9626907--9626952	24	1.9	24	91	8	76	36	0	2	60	1.09
9627049--9627076	9	3.1	9	100	0	56	57	10	0	32	1.33
9627019--9627219	59	3.1	68	84	13	307	45	8	4	40	1.57
9627208--9627249	16	2.6	16	92	0	66	42	7	2	47	1.43
9627223--9627277	22	2.5	22	84	0	74	43	1	1	52	1.22
9631492--9631606	35	3.3	35	74	7	117	29	28	6	34	1.83
9635832--9635871	19	2.1	19	85	0	53	40	12	0	47	1.41
9636308--9636413	56	1.9	56	94	0	185	50	14	13	21	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9639448--9639507	27	2.2	27	87	0	84	26	18	33	21	1.96
9640128--9640152	6	4.2	6	100	0	50	16	16	0	68	1.22
9641590--9641621	15	2.1	16	94	5	57	28	6	0	65	1.16
9643174--9643368	98	2.0	98	93	0	336	29	8	23	38	1.85
9645030--9645102	36	2.0	36	100	0	146	36	19	19	24	1.94
9652637--9653581	44	21.7	43	71	13	436	29	19	23	28	1.98
9652681--9653008	173	1.9	173	81	7	407	30	20	21	28	1.98
9652611--9653343	217	3.4	217	93	0	1234	29	20	22	27	1.98
9653466--9653591	45	2.8	44	81	12	150	27	18	26	26	1.98
9654104--9654135	16	1.9	17	93	6	57	25	6	0	68	1.12
9654361--9654403	21	2.0	22	90	4	70	20	0	16	62	1.32
9655285--9655309	9	2.8	9	100	0	50	24	0	8	68	1.16
9655587--9655781	98	2.0	98	95	0	354	28	9	24	37	1.87
9661388--9661414	6	4.5	6	100	0	54	33	0	0	66	0.92
9662884--9662958	26	2.9	26	95	0	132	4	4	37	54	1.38
9662897--9662947	10	5.7	9	78	17	52	3	1	39	54	1.30
9662897--9662958	10	7.1	9	76	20	51	3	3	37	56	1.32
9664190--9664215	11	2.4	11	100	0	52	30	0	15	53	1.42
9672148--9672183	16	2.3	16	90	4	56	58	5	13	22	1.56
9674076--9674175	50	2.0	50	96	0	182	33	13	19	35	1.90
9674228--9674266	20	2.0	20	89	0	60	30	2	2	64	1.21
9676095--9676130	16	2.2	16	100	0	72	25	0	36	38	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9676254--9676566	153	2.0	155	91	2	513	43	4	4	47	1.44
9676500--9676541	15	2.7	16	82	14	52	52	2	0	45	1.13
9676509--9676550	15	2.9	15	82	10	52	52	0	0	47	1.00
9676535--9676722	61	3.1	61	69	17	192	48	6	2	42	1.40
9676498--9676795	120	2.5	121	92	4	496	49	4	2	42	1.37
9676619--9676670	15	3.6	15	80	12	56	53	1	0	44	1.11
9676538--9676721	59	3.1	58	66	20	162	48	6	2	42	1.41
9676836--9676883	26	1.9	25	84	16	64	52	2	0	45	1.12
9676811--9677019	92	2.3	91	85	6	253	46	4	3	45	1.39
9680048--9680074	11	2.5	11	100	0	54	25	0	25	48	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214