genome.fa.s25.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  171  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50322080--50322108	4	7.2	4	100	0	58	48	27	0	24	1.51
50322266--50322321	26	2.1	27	93	3	96	58	7	0	33	1.25
50322275--50322330	26	2.2	26	80	6	60	71	3	0	25	1.02
50322379--50322445	27	2.5	27	87	4	91	28	28	26	16	1.97
50322526--50322565	11	3.9	10	87	12	55	67	0	32	0	0.91
50322526--50322565	21	2.0	20	90	5	62	67	0	32	0	0.91
50322588--50322626	19	2.0	21	85	10	55	23	0	10	66	1.22
50322699--50322727	3	9.7	3	100	0	58	0	0	31	68	0.89
50322851--50322903	26	2.0	26	96	0	97	43	0	7	49	1.31
50326624--50326759	18	8.1	17	66	14	59	0	27	0	70	0.97
50326627--50326720	21	4.5	20	71	11	73	1	25	1	72	0.98
50326599--50326660	28	2.3	26	79	17	65	1	27	0	70	0.96
50326619--50326755	39	3.7	37	78	16	115	0	28	0	70	0.98
50326654--50326803	4	36.0	4	74	15	101	0	31	0	68	0.95
50326620--50326798	40	4.3	43	72	18	134	0	30	0	68	0.98
50326609--50326812	82	2.5	83	81	11	223	0	32	0	66	1.00
50326846--50326912	27	2.5	27	87	0	98	17	26	26	28	1.98
50326966--50327019	27	2.0	27	100	0	108	33	0	7	59	1.25
50326972--50327044	27	2.7	27	82	2	74	42	0	8	49	1.32
50329017--50329064	25	1.9	25	95	0	87	41	10	10	37	1.74
50329023--50329079	25	2.3	25	81	6	71	45	14	10	29	1.78
50329519--50329581	31	2.0	31	96	0	117	46	23	3	26	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50343578--50343620	13	2.9	15	80	16	54	65	13	6	13	1.46
50344146--50344205	29	2.1	29	90	0	93	33	28	5	33	1.79
50344835--50344895	20	3.0	20	76	7	61	39	1	4	54	1.32
50350998--50351227	62	3.7	62	92	0	379	35	5	8	50	1.57
50351820--50351865	24	1.9	24	86	0	65	10	32	32	23	1.90
50354482--50354514	17	2.0	16	94	5	57	3	18	0	78	0.87
50356333--50356432	41	2.5	41	91	1	157	25	25	11	39	1.88
50358634--50358734	41	2.5	41	90	0	157	23	27	18	29	1.98
50358708--50358890	41	4.5	41	87	6	223	30	24	17	27	1.97
50367516--50367591	37	2.1	37	100	0	152	36	15	15	31	1.90
50377155--50377206	24	2.2	24	85	0	68	40	1	7	50	1.42
50382776--50382828	25	2.1	25	82	6	63	26	5	5	62	1.40
50384493--50384546	27	2.0	27	85	0	72	35	3	7	53	1.47
50385513--50385663	58	2.6	59	80	3	169	41	15	17	25	1.89
50391610--50391658	22	2.4	21	83	12	66	69	0	6	24	1.11
50399535--50399612	9	8.0	9	74	22	52	30	3	2	62	1.26
50408006--50408089	40	2.2	37	81	16	91	30	3	7	58	1.42
50408065--50408103	18	2.0	20	85	9	55	20	5	10	64	1.44
50408463--50408489	5	5.4	5	100	0	54	62	0	0	37	0.95
50408474--50408561	43	2.0	44	82	2	106	46	3	3	46	1.36
50409102--50409138	14	2.8	14	88	8	51	48	0	2	48	1.15
50414532--50414583	24	2.2	24	89	0	77	36	3	9	50	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50421710--50421754	23	2.0	23	82	8	56	37	6	0	55	1.26
50422122--50422147	9	2.9	9	100	0	52	11	0	19	69	1.18
50423831--50423856	12	2.2	12	100	0	52	42	23	0	34	1.54
50425005--50425073	30	2.3	30	97	0	129	28	36	15	18	1.92
50426085--50426179	30	3.1	31	85	10	115	44	2	0	53	1.12
50427890--50427984	47	2.2	43	83	12	115	31	15	23	29	1.95
50427906--50428008	47	2.2	47	91	0	161	30	14	21	33	1.93
50428409--50428438	15	2.0	15	100	0	60	33	6	0	60	1.23
50430318--50430349	16	1.9	16	93	6	55	71	0	0	28	0.86
50432165--50432221	11	5.2	11	74	16	55	56	3	1	38	1.27
50444984--50445030	21	2.2	22	92	3	78	21	19	38	21	1.94
50447780--50447828	16	3.1	16	84	0	71	38	2	34	24	1.67
50448001--50448042	15	2.7	16	82	14	52	52	2	0	45	1.13
50448010--50448051	15	2.9	15	82	10	52	52	0	0	47	1.00
50448120--50448171	15	3.6	15	80	12	56	53	1	0	44	1.11
50448250--50448291	15	2.9	15	82	10	52	52	0	0	47	1.00
50448360--50448411	15	3.6	15	80	12	56	53	1	0	44	1.11
50448004--50448536	120	4.4	120	97	0	978	49	6	2	41	1.39
50448477--50448759	91	3.0	93	83	7	299	47	3	3	44	1.38
50448577--50448637	28	2.2	28	85	5	81	50	3	0	45	1.17
50448552--50448759	91	2.3	90	89	4	317	46	4	3	45	1.41
50448577--50448719	44	3.2	43	68	16	119	48	3	2	46	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50448596--50448734	47	3.0	47	67	17	128	47	5	2	45	1.36
50452611--50453282	132	5.1	132	92	1	1001	28	23	18	29	1.98
50453929--50453957	14	2.1	14	100	0	58	62	6	17	13	1.52
50454593--50454655	7	9.0	7	78	13	67	14	17	1	66	1.33
50454593--50454655	20	3.0	20	83	6	72	14	17	1	66	1.33
50459584--50459608	7	3.6	7	100	0	50	56	0	12	32	1.36
50460218--50460274	20	2.9	19	77	15	53	68	3	12	15	1.34
50464174--50464265	40	2.3	40	83	3	105	29	15	28	27	1.96
50464198--50464275	40	1.9	41	89	2	122	30	14	25	29	1.94
50464198--50464306	40	2.7	40	79	9	116	31	15	22	30	1.95
50464352--50464462	41	2.7	41	88	5	163	20	18	30	29	1.97
50464843--50464908	7	9.6	7	71	3	53	16	0	33	50	1.46
50464837--50464908	34	2.1	36	86	5	103	16	0	31	51	1.45
50464981--50465022	21	2.0	21	85	0	57	21	7	19	52	1.69
50466392--50466636	122	2.0	122	92	3	404	32	20	16	29	1.95
50468487--50468710	43	5.3	43	83	1	263	24	17	29	28	1.97
50468502--50468710	85	2.4	85	82	1	249	25	17	29	27	1.98
50469013--50469042	15	1.9	16	93	6	53	43	0	0	56	0.99
50473551--50473602	22	2.4	22	83	6	70	57	19	15	7	1.62
50475209--50475272	28	2.3	28	77	17	71	50	1	0	48	1.10
50479852--50479894	22	2.0	22	85	0	59	18	11	13	55	1.68
50480224--50480315	19	4.8	19	91	0	157	38	10	15	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50481379--50481573	98	2.0	98	94	0	345	28	10	24	36	1.89
50485105--50485140	13	2.8	12	88	12	54	88	8	0	2	0.59
50486388--50487305	132	7.0	132	87	2	1272	28	16	24	30	1.97
50486388--50487305	263	3.5	264	88	2	1321	28	16	24	30	1.97
50487534--50487625	19	4.8	19	91	0	157	38	10	15	35	1.82
50488685--50488879	98	2.0	98	95	0	354	27	10	25	36	1.89
50500425--50500472	24	2.0	24	87	0	69	41	14	27	16	1.87
50500506--50500565	26	2.3	25	86	8	84	36	21	26	15	1.93
50505408--50505452	20	2.4	19	81	7	56	73	17	2	6	1.15
50506136--50506176	21	2.0	21	85	0	55	36	17	2	43	1.62
50512353--50512420	20	3.3	20	82	11	93	45	10	8	35	1.69
50512364--50512431	21	3.3	21	84	12	104	47	11	5	35	1.65
50512353--50512431	41	1.9	41	94	0	140	45	11	7	35	1.69
50515262--50515349	40	2.2	40	97	0	167	28	22	20	28	1.99
50519369--50519411	16	2.8	16	80	19	56	37	23	0	39	1.55
50521194--50521408	46	4.6	46	84	10	265	27	22	14	35	1.93
50521237--50521402	52	3.3	52	81	13	213	27	23	13	35	1.93
50521290--50521408	45	2.7	43	88	7	166	27	23	14	34	1.94
50533074--50533135	24	2.6	24	82	10	74	16	19	22	41	1.89
50537371--50537428	22	2.5	23	86	5	73	39	24	20	15	1.91
50537463--50537568	41	2.5	44	75	13	116	16	14	28	40	1.88
50538614--50538676	15	4.5	13	75	15	54	19	0	46	34	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50538624--50538676	22	2.4	22	90	0	79	18	0	47	33	1.49
50538611--50538677	7	9.4	7	79	12	57	17	0	46	35	1.49
50539964--50540007	22	2.0	22	86	8	63	0	29	0	70	0.88
50551860--50551958	23	4.3	22	72	18	60	52	3	2	42	1.28
50552054--50552100	25	1.9	25	86	4	69	42	4	0	53	1.20
50552237--50552304	14	5.1	14	71	26	58	38	1	0	60	1.06
50552243--50552304	26	2.3	26	76	15	65	38	1	0	59	1.07
50553610--50553642	7	4.7	7	96	0	57	12	33	30	24	1.91
50573966--50574160	49	4.0	49	93	0	309	30	29	15	24	1.96
50575413--50575485	37	2.0	37	94	2	130	24	23	16	35	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214