genome.fa.s25.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  114  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34711042--34711152	42	2.6	40	72	14	98	72	9	8	9	1.27
34712601--34712930	86	3.8	85	84	4	403	29	23	22	24	1.99
34712601--34712954	172	2.1	173	85	2	471	30	22	23	23	1.99
34713095--34713204	45	2.5	45	84	1	132	27	21	22	28	1.99
34713091--34713346	85	2.9	87	70	8	243	27	19	25	28	1.99
34713048--34713364	44	7.3	43	73	7	201	28	20	23	28	1.99
34713281--34713379	44	2.2	44	80	7	103	27	21	27	24	1.99
34713091--34713422	173	1.9	174	82	5	413	28	21	23	27	1.99
34720479--34720878	217	1.8	220	89	4	641	36	7	11	44	1.69
34722759--34723455	230	3.0	235	83	7	830	37	10	7	45	1.66
34727691--34727830	50	2.8	50	93	0	235	18	31	22	27	1.97
34727851--34727945	44	2.2	44	96	0	172	24	22	12	41	1.88
34729526--34729579	18	2.9	17	76	15	54	46	1	3	48	1.30
34729485--34729950	226	2.1	227	86	3	652	38	9	6	45	1.62
34730086--34730213	5	25.8	5	98	1	249	40	0	0	59	0.97
34730086--34730231	15	9.8	15	94	3	83	38	0	0	60	1.01
34732449--34732505	21	2.7	22	76	7	66	40	17	24	17	1.91
34732449--34732552	42	2.5	41	81	4	127	41	17	22	19	1.90
34733488--34733524	16	2.3	16	95	0	65	40	5	2	51	1.39
34733719--34733760	21	2.0	21	85	0	57	50	14	2	33	1.56
34740473--34740514	21	2.0	21	95	0	75	42	21	9	26	1.83
34743919--34743947	14	2.0	15	93	6	51	0	13	6	79	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34750068--34750120	23	2.4	22	76	20	56	9	18	1	69	1.25
34752864--34752963	45	2.2	45	89	3	148	30	38	8	24	1.84
34761133--34761194	24	2.6	23	80	7	79	24	8	20	46	1.77
34761257--34761322	27	2.5	27	83	9	91	19	22	22	34	1.96
34761319--34761375	26	2.2	26	87	6	80	15	19	28	36	1.92
34761369--34761568	32	6.3	32	86	2	260	24	19	17	39	1.92
34761560--34761611	22	2.4	22	83	0	68	17	21	19	42	1.89
34768111--34768219	43	2.6	43	85	8	143	22	16	27	33	1.95
34768114--34768255	43	3.4	43	80	12	127	23	15	26	34	1.95
34770300--34770389	35	2.5	37	92	7	157	65	0	2	32	1.05
34770321--34770382	11	5.4	11	75	9	61	62	0	3	33	1.11
34771494--34771533	14	2.9	14	88	0	62	32	5	17	45	1.70
34771517--34771556	20	2.0	20	90	0	62	27	10	12	50	1.72
34771502--34771568	34	1.9	35	93	3	118	31	7	13	47	1.70
34772805--34772831	13	2.1	13	100	0	54	55	14	7	22	1.64
34773858--34773890	12	2.8	12	95	0	57	54	6	39	0	1.25
34773870--34773909	19	2.1	19	90	0	62	47	5	45	2	1.38
34775152--34775242	40	2.3	40	82	0	101	54	5	4	35	1.43
34775166--34775244	40	2.0	40	87	0	113	54	5	3	36	1.41
34780562--34780606	23	2.0	22	84	16	58	35	0	17	46	1.49
34781041--34781081	21	2.0	21	85	9	57	43	0	24	31	1.54
34783279--34783315	20	1.9	19	89	10	58	43	5	0	51	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34784186--34784226	15	2.6	17	77	14	52	41	7	0	51	1.30
34784692--34784737	24	2.0	24	82	4	58	15	6	17	60	1.55
34787724--34787803	25	3.2	25	75	7	81	28	21	27	22	1.99
34789248--34789306	30	2.0	30	100	0	118	27	6	15	50	1.68
34797788--34798180	195	2.0	195	96	1	734	34	22	13	29	1.93
34808778--34808893	61	2.0	60	86	5	164	50	6	2	41	1.41
34808836--34808977	67	2.1	70	80	10	159	50	4	4	41	1.41
34809241--34809282	19	2.2	19	86	0	57	9	21	23	45	1.81
34823783--34823832	21	2.3	21	79	3	55	20	18	16	46	1.85
34831215--34831371	81	1.9	81	100	0	314	26	23	21	29	1.99
34838156--34838196	21	2.0	21	90	0	64	60	2	2	34	1.23
34838167--34838247	21	3.9	21	74	19	73	59	0	3	37	1.15
34838242--34838287	17	2.7	17	86	0	65	58	0	0	41	0.98
34842889--34842940	27	1.9	27	96	0	95	73	3	3	19	1.15
34843473--34843518	20	2.3	20	84	0	56	15	10	6	67	1.40
34844629--34844682	21	2.5	20	82	11	63	31	1	18	48	1.59
34844738--34844780	21	2.0	21	100	0	86	13	0	27	58	1.37
34850176--34850224	20	2.7	18	77	22	57	51	4	2	42	1.32
34850300--34850662	180	2.0	180	89	1	548	25	29	20	23	1.99
34851179--34851361	86	2.2	84	84	5	226	32	27	16	23	1.96
34851136--34851361	43	5.3	42	81	6	181	32	26	17	24	1.97
34856548--34856699	41	3.7	41	83	2	191	19	22	30	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34857033--34857069	14	2.6	14	95	0	65	21	0	29	48	1.50
34857170--34857214	22	2.1	21	83	4	54	33	0	35	31	1.58
34857207--34857254	26	1.9	24	83	8	60	25	0	29	45	1.53
34857311--34857345	6	5.8	6	90	10	54	2	0	45	51	1.16
34857311--34857345	11	2.9	12	91	8	54	2	0	45	51	1.16
34857284--34857347	6	10.0	7	79	16	52	9	1	46	42	1.45
34857284--34857345	13	4.9	13	80	13	51	8	1	46	43	1.42
34861345--34861484	43	3.3	43	81	2	156	27	15	27	28	1.96
34861799--34861846	21	2.3	22	78	10	55	37	33	0	29	1.58
34861834--34861875	14	2.9	14	82	6	57	33	33	2	30	1.71
34862141--34862189	14	3.4	14	88	5	71	42	34	0	22	1.54
34862535--34862975	41	10.8	41	82	0	445	31	28	17	22	1.97
34866097--34866655	115	4.9	112	76	8	482	31	18	22	26	1.97
34866114--34866655	229	2.4	229	79	3	561	32	19	22	26	1.97
34868503--34868838	43	7.8	43	85	4	399	22	29	19	28	1.98
34869032--34869088	19	3.0	19	92	0	96	61	0	8	29	1.26
34869191--34869239	21	2.3	21	82	0	62	2	40	18	38	1.62
34869678--34869710	13	2.4	14	90	5	50	69	12	0	18	1.18
34874796--34875139	9	39.8	9	71	15	253	31	2	20	46	1.63
34874800--34875133	34	10.0	34	70	18	190	31	2	20	46	1.62
34874823--34875047	59	3.8	58	82	8	238	32	2	20	45	1.63
34874963--34875019	19	3.1	19	82	12	57	31	0	19	49	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34874785--34875106	25	12.3	25	72	15	167	31	2	19	46	1.62
34874973--34875130	16	8.4	19	70	26	67	29	0	20	49	1.54
34875253--34875277	13	1.9	13	100	0	50	32	0	28	40	1.57
34875266--34875406	9	16.2	9	69	17	50	34	1	17	46	1.56
34875266--34875329	16	3.9	16	74	8	65	34	1	15	48	1.55
34875368--34875499	12	11.6	11	71	18	74	37	0	13	48	1.48
34875358--34875464	33	3.2	33	81	7	110	37	0	14	47	1.45
34875371--34875497	45	3.0	44	70	23	137	36	0	13	49	1.48
34875342--34875499	12	13.8	12	68	21	65	37	0	14	47	1.49
34875342--34875501	23	7.1	22	66	18	71	36	0	15	47	1.50
34875561--34875598	18	2.1	18	85	9	51	52	2	0	44	1.14
34877928--34877979	27	1.9	27	84	0	68	48	9	0	42	1.36
34878047--34878075	10	2.9	10	100	0	58	41	17	0	41	1.49
34880767--34881029	41	6.4	41	76	4	262	36	21	25	16	1.94
34880789--34881028	82	2.9	81	87	2	345	35	22	25	16	1.94
34881067--34881201	40	3.4	38	76	7	117	17	22	22	37	1.94
34884205--34884930	9	82.7	9	75	11	620	47	17	2	33	1.59
34884806--34884930	50	2.5	52	90	5	195	42	20	3	34	1.68
34884806--34884930	59	2.2	59	91	5	202	42	20	3	34	1.68
34890390--34890440	21	2.4	21	86	0	66	33	19	43	3	1.70
34890816--34890930	43	2.7	43	77	6	115	29	19	22	28	1.98
34890925--34891032	42	2.6	42	77	5	112	36	19	17	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34893683--34893761	26	3.0	26	73	10	79	49	2	2	45	1.29
34895992--34896026	17	2.0	18	94	5	63	57	0	11	31	1.34
34895997--34896035	17	2.2	17	90	4	60	61	0	12	25	1.31
34897497--34897526	15	2.1	14	93	6	51	86	0	13	0	0.57
34897991--34898065	30	2.4	30	80	8	89	64	0	5	30	1.16
34898306--34898376	28	2.5	28	100	0	142	26	8	4	60	1.44
34898355--34898397	19	2.3	19	87	0	59	25	6	4	62	1.40
34904868--34904917	6	8.3	6	95	0	91	66	16	2	16	1.35
34904914--34904962	3	16.3	3	95	0	89	65	0	2	32	1.04
34904872--34904959	12	7.3	12	85	10	62	64	7	2	25	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214