genome.fa.s25.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  172  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50575449--50575711	46	5.6	46	89	5	382	28	22	14	34	1.94
50575584--50575697	52	2.2	52	87	4	158	28	22	12	35	1.91
50582977--50583010	18	1.9	17	88	5	50	32	0	20	47	1.51
50584209--50584242	15	2.4	14	90	5	50	82	0	2	14	0.79
50592060--50592190	46	2.8	46	83	4	165	35	19	6	38	1.78
50592149--50592255	38	3.1	38	72	27	137	38	21	2	37	1.68
50592182--50592240	27	2.1	28	96	3	111	33	23	3	38	1.72
50592582--50592624	22	2.0	22	90	0	68	9	18	27	44	1.80
50592696--50592941	43	5.7	43	88	0	314	26	29	17	26	1.98
50592696--50592941	128	1.9	129	84	2	334	26	29	17	26	1.98
50595848--50595888	21	2.0	21	95	0	73	29	43	0	26	1.55
50596086--50596130	23	1.9	24	90	4	74	64	0	0	35	0.94
50596096--50596137	11	3.8	11	80	20	52	69	0	0	30	0.89
50596168--50596230	22	2.9	22	83	4	74	36	42	1	19	1.61
50596243--50596283	14	2.9	15	82	10	59	39	31	0	29	1.57
50596246--50596292	15	3.3	15	82	8	53	42	29	0	27	1.56
50596517--50596630	41	2.8	41	90	5	169	28	30	20	20	1.97
50604983--50605016	17	1.9	18	88	5	52	23	2	0	73	0.97
50607619--50607676	22	2.5	23	86	5	73	39	24	20	15	1.91
50607711--50607816	41	2.5	44	75	13	116	16	14	28	40	1.88
50607851--50607975	41	3.0	40	70	15	110	22	15	25	36	1.93
50608871--50608935	22	3.0	20	76	12	67	18	0	44	36	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50608870--50608934	15	4.5	14	80	5	58	18	0	44	36	1.50
50608868--50608935	7	9.4	7	78	12	66	17	0	45	36	1.49
50610222--50610263	22	1.9	23	90	9	70	0	30	0	69	0.89
50610222--50610264	21	2.0	21	86	8	61	0	30	0	69	0.88
50612193--50612222	15	2.1	14	93	6	51	63	0	0	36	0.95
50622111--50622201	23	4.0	22	77	9	76	51	3	2	42	1.30
50622297--50622348	25	2.1	25	85	3	70	42	3	0	53	1.19
50622479--50622547	14	5.1	14	71	23	58	37	1	0	60	1.06
50622480--50622547	20	3.3	20	78	13	68	38	1	0	60	1.06
50623851--50623883	7	4.7	7	96	0	57	12	33	30	24	1.91
50626933--50626987	23	2.3	25	75	12	62	45	1	1	50	1.22
50628252--50628290	20	2.1	18	85	9	51	48	2	0	48	1.15
50640926--50641020	50	1.9	49	89	2	145	28	25	17	28	1.98
50655681--50655716	2	18.0	2	88	0	54	0	5	50	44	1.25
50655681--50655716	16	2.2	16	100	0	72	0	5	50	44	1.25
50660158--50660260	43	2.4	41	87	9	143	47	12	5	33	1.65
50664490--50664595	53	2.0	53	88	3	160	42	15	8	33	1.77
50669214--50669330	62	1.9	61	84	5	157	47	4	4	43	1.42
50673170--50673261	18	4.9	18	73	13	62	61	5	3	29	1.34
50673805--50673872	31	2.2	31	81	5	84	23	14	19	42	1.88
50674728--50674762	17	2.0	18	88	5	54	57	2	0	40	1.14
50676811--50676889	21	3.9	21	88	3	108	15	25	16	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50676807--50676889	42	2.0	40	88	4	121	16	25	15	42	1.88
50679354--50679409	29	1.9	29	85	7	78	8	21	10	58	1.58
50679431--50679510	3	27.7	3	70	20	55	32	5	0	62	1.17
50679433--50679510	18	4.5	16	77	19	68	32	5	0	62	1.17
50682991--50683031	18	2.2	20	86	8	59	17	2	12	68	1.31
50682990--50683034	17	2.4	19	82	13	58	17	2	13	66	1.34
50682991--50683040	20	2.6	19	81	12	50	18	4	12	66	1.39
50684236--50684294	22	2.7	21	72	15	57	32	1	5	61	1.28
50685810--50685860	21	2.4	21	86	0	75	27	7	33	31	1.85
50691235--50691274	20	2.1	20	86	9	57	32	12	2	52	1.52
50700780--50701040	132	2.0	132	86	1	371	38	22	10	28	1.87
50705248--50705287	19	2.1	19	86	9	55	0	32	2	65	1.06
50705244--50705292	21	2.3	21	83	16	66	0	34	2	63	1.06
50710468--50710626	62	2.6	62	78	4	176	23	28	23	25	2.00
50727365--50727412	25	2.0	24	84	12	62	41	22	20	14	1.89
50727361--50727442	24	3.3	24	77	6	67	43	18	19	18	1.88
50728308--50728354	25	1.9	24	86	4	67	38	23	21	17	1.93
50728338--50728388	24	2.1	24	92	0	84	41	21	23	13	1.89
50728351--50728396	24	1.9	24	90	0	74	43	19	26	10	1.84
50728432--50728479	25	1.9	25	91	0	78	35	22	25	16	1.95
50729867--50730108	124	1.9	125	86	4	346	30	15	23	31	1.95
50733295--50734793	33	49.1	31	79	15	1334	27	0	23	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50733282--50734793	61	24.8	61	78	16	1316	28	0	23	48	1.51
50733834--50733889	23	2.4	23	96	0	103	25	0	26	48	1.52
50733969--50734039	28	2.9	23	79	18	88	29	0	25	45	1.54
50734153--50734251	23	3.9	23	74	23	72	29	0	23	47	1.52
50734321--50734365	23	2.0	23	100	0	90	31	0	17	51	1.46
50734530--50734585	23	2.4	23	96	0	103	25	0	26	48	1.52
50734647--50734702	23	2.4	23	96	0	103	25	0	26	48	1.52
50734751--50734830	23	3.4	24	79	6	83	30	1	23	45	1.61
50733282--50734805	117	12.5	116	85	11	1578	28	0	23	48	1.51
50736912--50736962	22	2.2	24	86	6	70	64	5	0	29	1.17
50737063--50737118	28	2.0	29	92	3	96	60	1	0	37	1.07
50737160--50737201	22	1.9	22	90	0	66	33	0	33	33	1.58
50737173--50737231	30	2.0	30	89	0	91	33	0	33	32	1.58
50737151--50737253	52	2.0	51	83	9	129	34	0	32	33	1.58
50737203--50737270	22	3.1	21	83	8	82	39	0	27	32	1.57
50742570--50742617	23	2.0	25	88	12	73	33	2	0	64	1.05
50742571--50742622	24	2.2	22	83	16	61	34	1	0	63	1.06
50748364--50748421	30	1.9	30	85	0	80	39	8	22	29	1.84
50748870--50748922	23	2.3	23	83	0	79	22	18	24	33	1.97
50749052--50749124	38	1.9	38	89	8	114	46	1	20	31	1.59
50750142--50750168	8	3.4	8	100	0	54	37	11	0	51	1.37
50767952--50767994	21	2.0	21	86	9	59	30	9	20	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50771916--50771955	20	2.0	20	85	9	55	35	10	12	42	1.76
50783155--50783182	12	2.3	12	100	0	56	42	28	21	7	1.79
50789142--50789320	51	3.5	51	93	0	297	28	24	15	31	1.95
50793561--50793869	59	5.2	58	66	20	197	42	2	4	49	1.37
50793550--50793967	120	3.5	120	94	1	730	43	2	5	49	1.37
50793623--50793939	61	5.3	61	68	15	237	42	1	5	49	1.38
50793684--50793729	16	2.9	16	78	12	51	45	0	2	52	1.13
50793778--50793825	18	2.8	18	74	22	50	43	0	0	56	0.99
50793778--50793850	16	4.6	16	73	19	55	45	0	1	53	1.09
50793624--50793927	57	5.1	58	66	25	177	42	1	6	49	1.39
50793924--50793965	15	2.7	16	82	14	52	45	0	2	52	1.13
50793915--50793956	15	2.9	15	82	10	52	47	0	0	52	1.00
50794177--50794209	16	2.1	16	100	0	66	18	33	6	42	1.75
50794255--50794299	16	2.8	16	96	0	81	46	4	28	20	1.69
50794287--50794384	44	2.2	44	83	5	117	34	5	27	32	1.79
50795393--50795418	11	2.4	11	100	0	52	42	34	15	7	1.75
50796201--50796267	33	2.0	33	100	0	134	50	25	2	20	1.62
50797419--50797446	14	2.0	14	100	0	56	64	0	28	7	1.20
50797422--50797465	18	2.5	17	79	17	54	70	0	22	6	1.11
50810090--50810114	11	2.3	11	100	0	50	8	0	0	92	0.40
50814639--50814755	41	2.9	41	90	0	189	23	17	33	25	1.96
50814589--50814869	155	1.8	154	88	2	429	25	19	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50814684--50815163	114	4.2	114	91	0	746	25	18	28	26	1.98
50815067--50815220	73	2.1	72	90	1	236	27	18	27	25	1.98
50815373--50815421	14	3.4	14	91	2	71	24	2	38	34	1.67
50815387--50815455	14	4.8	15	80	7	54	23	0	40	36	1.55
50815657--50815695	14	2.7	15	88	4	53	30	0	33	35	1.58
50815714--50815770	15	3.9	14	84	15	80	24	0	42	33	1.55
50816666--50816997	143	2.3	146	93	3	564	36	15	16	31	1.90
50816874--50817120	123	2.0	123	96	1	460	39	14	14	31	1.86
50816862--50817444	279	2.0	284	87	8	827	39	15	15	29	1.88
50816997--50817476	148	3.2	148	91	4	721	38	15	16	29	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214